XLOC_025776


Basic Information

Item Value
gene id XLOC_025776
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 54834509 ~ 54836517 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052804
GGAAGTGATAACCATCACATATAGCCCACAAATATTGTGGAGGCAGTGTGAACACCATTACAGGGAGATGACACAGGAGGAAAATATTTCTgctttatatatattaattaaaaaaaaggaaaaaaaaaaaagattcatgatAAAACAGACAAATGTGCTGTAAGTGCTGAGCAGAACGTTCTGGGTATGAAATGCTTCCTATAGCATTCTCTTTGCACAAAATGCCATAGTAGTTTATCACAGAGTTGTGAGGAAGTCAATAATTCTAGAGTCTTGAGTTtctacagtaaacatgtcagttaAAGGGCAGATCACACAAATAGGAACTTGCTGTAATCATTTGCTCACTCTCATGTCTCTCTAAACCCATAAAACGTGCACTCTTCCCTGAAATATATAAGAAGAATATTAATTTAGGTCATTAAGCAGTCAATGGAATCAAAAGAAATGAAATAATCCCAGTTTGAAACGGCTTGACGGTGAGTATCAATGGTTCTAAGAAAAAACGAAATGCTCTTTGTAGTACAAAACTgttctttagattattaaaaGAGTCTGCACTCGgtttgtcacgatactggaattccaTATTAATtagtactgaagttttaaaaacttcCATTTGAAGCGTTTTAAAGGGGAGATTCATCAGCAGATCGcccgtatgtcagcttatagacaaaccagctaaCCAACATGTCTTTgtaatgctccagtgtccctataTCTGtgattacactcagtaaacagcggtgagttcggtgaactggtgaccttcatggccaatcccagtcatttctgttgaagaCGTTAACACAATGGCAAATTAGCACTGCTTAATAATGTCCTCAACAGCACTTAAATGGTCgcaggaaatggacatttttaagaCTTCAGTAACGactggtatcgaattccagtatcgtgacaaccccaTACTGAAATCCGGTACAAATCAATATAgagtccatttcccactaacatttga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052804 True 988 lncRNA 0.37 2 54834509 54836517

Neighbor

gene id symbol gene type direction distance location
XLOC_025775 sc:d0202 coding upstream 19979 54776117 ~ 54814530 (+)
XLOC_025774 si:ch211-74m13.1 coding upstream 62700 54761569 ~ 54771809 (+)
XLOC_025773 icam3 coding upstream 82145 54744069 ~ 54752364 (+)
XLOC_025772 eif3g coding upstream 244686 54581987 ~ 54589823 (+)
XLOC_025771 p2ry11 coding upstream 256524 54572725 ~ 54577985 (+)
XLOC_025777 mgrn1b coding downstream 12566 54849083 ~ 54875874 (+)
XLOC_025778 aanat2 coding downstream 51265 54887782 ~ 54893706 (+)
XLOC_025779 mpg coding downstream 195168 55031685 ~ 55043150 (+)
XLOC_025780 hbaa2 coding downstream 257064 55093581 ~ 55094399 (+)
XLOC_025781 hbaa1 coding downstream 263528 55100045 ~ 55100936 (+)
XLOC_025429 BX649540.1 misc upstream 24585473 30248739 ~ 30249036 (+)
XLOC_025769 NA non-coding upstream 497870 54332726 ~ 54336639 (+)
XLOC_025768 NA non-coding upstream 530885 54289678 ~ 54303624 (+)
XLOC_025767 NA non-coding upstream 550324 54283767 ~ 54284185 (+)
XLOC_025766 NA non-coding upstream 563164 54270703 ~ 54271345 (+)
XLOC_025765 NA non-coding upstream 722537 54111389 ~ 54111972 (+)
XLOC_025787 CT583658.1 non-coding downstream 462526 55299043 ~ 55299158 (+)
XLOC_025788 NA non-coding downstream 549698 55386215 ~ 55387657 (+)
XLOC_025789 NA non-coding downstream 645603 55482120 ~ 55488241 (+)
XLOC_025790 NA non-coding downstream 810356 55646873 ~ 55654264 (+)
XLOC_025791 FP326652.1 non-coding downstream 1262739 56099256 ~ 56107909 (+)

Expression


Co-expression Network