LOC110529813 (LOC106571626)


Basic Information

Item Value
gene id LOC110529813
gene name LOC106571626
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32495429 ~ 32503490 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986867.1
actggcccaatgctcaaaccacttggctacctgccgcccctgattatgttaattagcctgcCTCATCTCTTGTGTTTACTTTCTCATGTTTGCCTATTTGTCTATGTGGTGCGCATCAGGGCATAGTTTTATGTACTACAAGATTATTAGATGATACCGCATGTTTTCTCTCCGCTGTGTAATCATGACTGTTCAGCACAGTCTAAAACCTGTGGTTCCACCAGTCATAACTGAAAACCATCTCTGACACTGCTGTGTGAATGTTCTTGTTGTGGATGGGAACACAGCAAACGTTGAAAACTGTGTGGACCATCCCAGCACTGTAATGTCCACGTCTTTGTTCGTCGTTGATTGACCAAATATCACGATCAATTAGAAGAAATGTATGTGTATATCATGTGAAATGTGTCTGCGACTCTCGCTTGACTGTGATCCTGATACCAGTGTTGGCCTGAGGCATGGTAGGTACTGTTATAGTCAGATGAACTATATGTGGAGGAGTCTCTCCTGTCCCTCCATTTCCCTTACTAACTTGTGTTGCCTACTATTTTCAGGTATCCAGTTTCGCCTCCCTTCTTCCTGCAGTGTGGACCGAGCCAATCCACCTCCAGcGGTGACACACACGCCTAGCTATAAGGCAAAGACGCCCCCGCCGGTGCCACCTCGCGCCACCTCCAAGCCCCTCATCTCGGTGACAGCCCAGAGCAGCACAGATTCCACCCAGGATGCCTACCACGAGGGAAGGCACCCGCGGGGGAGTATCCTGTGGGCGCCGGACGGTCTGGGCGGCTCGGGTCGAAACCTCTACAACTCCACCGACAGCCTGGACAGTGCCAAGGCGGTGACGTTGGCCATGGAGACGGCGGCGGGCAAGCGGCACGCCTCCATGGGCAGCCACAGCTCTGTGCAGACGTGTGACAAGGCAGTGCTCGTGTCCAAGGCTGAGGAATACCTCAAAACACCACGCTCTTCCATAGGGATTCAGGTGGAGACGGCGACAGACTCCGAGTCGGAGAGCAAAGGGCTTCCTCAGTACCATTCTGTGGGCACCCAGGTGGAGGATGACAAAGGGTACGCATGCAGGAAATGGAAACAGAAAATACAACCGTTGCAGTTTGCCCTCTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986867.1 True 1126 mRNA 0.52 3 32495429 32503490

Neighbor

gene id symbol gene type direction distance location
grcc10 cssa15h12orf57 coding upstream 206418 32287164 ~ 32289011 (+)
LOC110529802 ppp1cb coding upstream 227061 32256318 ~ 32268368 (+)
LOC110529800 LOC106571632 coding upstream 239591 32216576 ~ 32255838 (+)
LOC110529803 LOC106571638 coding upstream 281342 32194207 ~ 32214087 (+)
LOC110529801 LOC106571636 coding upstream 301725 32172212 ~ 32193704 (+)
LOC110529815 LOC106571624 coding downstream 36768 32540258 ~ 32544145 (+)
rps7 LOC106608110 coding downstream 178942 32682432 ~ 32686606 (+)
LOC118965652 NA coding downstream 180209 32683699 ~ 32683923 (+)
LOC118965651 NA coding downstream 181215 32684705 ~ 32684929 (+)
LOC118965649 NA coding downstream 181740 32685230 ~ 32685454 (+)
G697393 NA non-coding upstream 6309 32488895 ~ 32489120 (+)
G697392 NA non-coding upstream 6638 32488469 ~ 32488791 (+)
G697385 NA non-coding upstream 20677 32474512 ~ 32474752 (+)
G697373 NA non-coding upstream 42224 32452977 ~ 32453205 (+)
G697371 NA non-coding upstream 46598 32448605 ~ 32448831 (+)
G697404 NA non-coding downstream 3837 32507327 ~ 32507528 (+)
G697302 NA non-coding downstream 13735 32517225 ~ 32518147 (+)
G697782 NA non-coding downstream 16406 32519896 ~ 32520152 (+)
G697788 NA non-coding downstream 20139 32523629 ~ 32523852 (+)
G697794 NA non-coding downstream 22065 32525555 ~ 32525776 (+)
G694036 NA other upstream 2702682 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 3557156 28930668 ~ 28939888 (+)
G693207 NA other upstream 3789677 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 3937056 28495104 ~ 28605625 (+)
G692424 NA other upstream 4425201 28069900 ~ 28070228 (+)
G699605 NA other downstream 1624103 34127593 ~ 34128301 (+)
LOC110529856 LOC106571576 other downstream 2951358 35454437 ~ 35462086 (+)
G700685 NA other downstream 3109674 35613164 ~ 35614666 (+)
G700864 NA other downstream 3400559 35904049 ~ 35904698 (+)
G702415 NA other downstream 4196948 36700438 ~ 36700739 (+)

Expression


Co-expression Network