allc (allc)


Basic Information

Item Value
gene id allc
gene name allc
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32691529 ~ 32696670 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612378.2
GTCGAGTGTTGAAATGTACTGTAACGAACCTGGGTTTATAACTGCGGAAATGACAACTGGCTAGAAAATGTGAACATGCATTTTATGGAAAAGAGAGTTTCTGAATGACGGATCATGCTGCCTTTCTAAAAACATAACCAAGCGGTTCAGATTGCTGTTCGATTTTAGCAGGGCGCGCCTCCCTCACGTGACGGACCATAGCCCCGTGCAACTCTGGCCAGTTTAATATAACCCCATCATGGTTGTACAAGGTGCTCACGCTTTCATCCCACAAAAGAAAGCTAGAGCACAACAATCTtgaacagatatacagtattcaaaacaaaaaaaatccattcCCCCACCACCTATCTCGTTTAGTTTAGTTAACACTGCTGTCAATGACTTCCCAGTCACCGGACTTTGCCCTGGTGAATTGATTGAAAGAAAACAGGCACCAGAAGAATCTATTCATTAGTGGTTGTGGACTGCTTTTTTAAACTTGGAAGTACAGGAAGCTGTAATATATAAAAGCAGATTTATCTTATTGTATGAGGTAAATGATAATTATTTTCTCAATCTGGATCGAGTTACATATCGGGATTGTAAATTATAGTCTGCAATAGAATGGCAGACCGAAAAGCAGTGAAAATTGTCAGTGGTCAACCAGACTTTCTGCAGTTTAATAACCTGGCCTGTGAGACAGCTGGAGGAAATGTTATTTTTGCGACAGACGAATGGTTTGCACCAGCTAGCAATCTTCTGAAGAGAGAGCCACCAGAGTTCATAGCGTCTGCATTCACCGAGTACGGAAAATGGATGGACGGCTGGGAGACGAGAAGGAAAAGAATACCTGGTCATGACTGGTGCATCATCCAGCTGGGTGTACCTGGCATCATACATGGCCTGGATGTGGACACGTCCTTCTTTACTGGAAACTACTCGCCCTCTGCCTCTGTTCAGGCTGCGTGTCTGGATGAGGCCCCAGCACTGACCCTGGAGGGAGACCGCACTGGCATGGCTGCTTCCGACAGTCAGTTTGAAGCAGTTGCTAAGTTGCACTCTGAGTTGTGGGAGGAGCTTGTTCCTGTGACAGAGCTGAAACCTGGCTACTCCGACACCTGTCATAACTACTTCCCAATCACCTACCCCAGCAGAGTCACCCACCTACGACTCAACATGTACCCAGATGGGGGGATTGCTAGACTGAAGGTCTATGGCGTTGGGCAGAAAGACTGGTCTGCCCTGCCCACACAGGACCAGCTGGACCTGGTGGCCCTGGTCAACGGTGGGGTCTGTCTGGGCTACAGCGACGCCCACTTTGGCCACCCCCGGAATATGATTGGTTTGGGAAGATCTGCAAACATGGGCGATGGATGGGAGACAGCCCGTCGACTGGACAGACCCAAAAACCTACAGGTGGACGGGAAGGGCATCCTACAGGTACCAGGTTATGAGTGGGCCGTTCTCAGACTGGGGCATCCCGGAGTCATCAGCCAAATTGAGATAGACACCAACCACTTCAAAGGAAACTTCCCAGACTCCTGTAAGATAGAAGCGTGCCATCTGACCCCTGAGGAGGAAGGGAAGTATGTGAGTGGCAGGTGGAGCAGCGATCCAGGAAACAAATGGCGGGTGCTTCTGCAACCTCAGAAACTGCAGGCCCATCACAGGCACTTTTACTCATGTGACTCGCTGGCGCTGTCTGGGCCGGTCACTCACGTGCGTCTGGTCATCGCCCCAGATGGAGGGGTCAGCCGACTCAGACTCTGGGGGCGTCCGACTTCCACAAGACACATCTCCAAACTGTGATGCATTAGGCCACATTATTGGATGAGTTTTGGTGAGCTCATTGTGGGAATTAATGGCCTGAGTGTAACATGTAGGCTACATATGAAGCTTAAAAAAATAAACTTTCATCTGAAAAGATACAACTGGGTCTAAGGAGATGCATAAACAATGTATGTTTTGACATTATTTTTGAGTTTATATTGGATGCAATTATATTAAGAAATCTTGCATAGCTGCAACAGTGGGTCTCACAGGGTTAAGCCGTTATAGgaaacaatggtgtgtgtgtgtgtgttgtggtgtcaaTGCCATGTGAAGAATTG

Function

symbol description
allc Predicted to enable allantoicase activity. Predicted to be involved in allantoin catabolic process. Predicted to act upstream of or within purine nucleobase metabolic process. Orthologous to human ALLC (allantoicase).

NR:

description
probable allantoicase

GO:

id name namespace
GO:0006144 purine nucleobase metabolic process biological_process
GO:0000256 allantoin catabolic process biological_process
GO:0004037 allantoicase activity molecular_function

KEGG:

id description
K01477 alc, ALLC; allantoicase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612378.2 True 2093 mRNA 0.48 11 32691529 32696670

Neighbor

gene id symbol gene type direction distance location
rps7 LOC106608110 coding upstream 4923 32682432 ~ 32686606 (+)
LOC118965650 NA coding upstream 5138 32686167 ~ 32686391 (+)
LOC118965649 NA coding upstream 6075 32685230 ~ 32685454 (+)
LOC118965651 NA coding upstream 6600 32684705 ~ 32684929 (+)
LOC118965652 NA coding upstream 7606 32683699 ~ 32683923 (+)
LOC110529823 LOC106571612 coding downstream 715048 33411718 ~ 33424020 (+)
LOC110529826 LOC106571610 coding downstream 739618 33436288 ~ 33445632 (+)
LOC118965509 LOC106571610 coding downstream 749751 33446421 ~ 33453220 (+)
sf3b6 sf3b6 coding downstream 783539 33480209 ~ 33484404 (+)
LOC110529830 LOC106571599 coding downstream 959963 33656633 ~ 33680837 (+)
G697888 NA non-coding upstream 22490 32668837 ~ 32669039 (+)
G697884 NA non-coding upstream 26270 32665036 ~ 32665259 (+)
G697845 NA non-coding upstream 119557 32570015 ~ 32571972 (+)
G697847 NA non-coding upstream 128287 32563043 ~ 32563242 (+)
G697825 NA non-coding upstream 143649 32547678 ~ 32547880 (+)
G698066 NA non-coding downstream 88008 32784678 ~ 32784882 (+)
G698075 NA non-coding downstream 92580 32789250 ~ 32789520 (+)
G698100 NA non-coding downstream 108302 32804972 ~ 32805195 (+)
G698333 LOC106571616 non-coding downstream 281213 32977883 ~ 32981833 (+)
G698468 NA non-coding downstream 388988 33085658 ~ 33085897 (+)
G694036 NA other upstream 2898782 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 3753256 28930668 ~ 28939888 (+)
G693207 NA other upstream 3985777 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 4133156 28495104 ~ 28605625 (+)
G692424 NA other upstream 4621301 28069900 ~ 28070228 (+)
G699605 NA other downstream 1430923 34127593 ~ 34128301 (+)
LOC110529856 LOC106571576 other downstream 2758178 35454437 ~ 35462086 (+)
G700685 NA other downstream 2916494 35613164 ~ 35614666 (+)
G700864 NA other downstream 3207379 35904049 ~ 35904698 (+)
G702415 NA other downstream 4003768 36700438 ~ 36700739 (+)

Expression


Co-expression Network