LOC110529824


Basic Information

Item Value
gene id LOC110529824
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33409803 ~ 33413009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052863.1
GCAGGAAGAAAAAGCAATTTGCGatcatGGTGGGTGTCAGAGTGGTCTCTCCTGTCCTTTAGGGATCCCTCACAGTGAAGTATGAGGATCAGAGTACAGCTGGACTGTGGAAGTCTGTTTCTCCTACCCAGTCAACAGAGAACATCTCCACAAGTTCAAACACATCTATGGAAACGTTTTTCACCTACTTCTGTAATCTGGATGAAGACGCACACCACCCTCTGAAGCTGCTACCAGAGTATGTCTATATAGTCTACTACAAGTTTGAAtgcatgaccaaagGGTCTGACATCTAAGCGTCCTGATGGCAAGGCAGACGAATGCAAATCTCTTTGAAACCGAAGAATCTATTTGAGAAATAAGTGGTCGCCAACTGAATGTGCTTCAAGCTAATTTGAATATTTTAATAGACCTTTCATTGTTGATACCCAAATCTTTTTCCTCAAACATTCTGTTTCCTATCACTCCTTGGCTTGATGAAATCTATCTGatctttttttttaatcaatgttGAAGGGAGACAATCGCATTCAataaaatcaaaaaaaaaaaaa
>XR_005052861.1
CGGGTTTGTAAAATTTTATGAGGAGCTCTATACTAGTTGTATTGCTATGAAAACGGGGCTTTATATATTTTCACAACACAAGTTTATGAGAAAGTTTGGGGTTTGTTTGTGAGTATGTTGGTAGCTAGCTATAGatcatGGTGGGTGTCAGAGTGGTCTCTCCTGTCCTTTAGGGATCCCTCACAGTGAAGTATGAGGATCAGAGTACAGCTGGACTGTGGAAGTCTGTTTCTCCTACCCAGTCAACAGAGAACATCTCCACAAGTTCAAACACATCTATGGAAACGTTTTTCACCTACTTCTGTAATCTGGATGAAGACGCACACCACCCTCTGAAGCTGCTACCAGAGTATGTCTATATAGTCTACTACAAGTTTGAAtgcatgaccaaagGGTCTGACATCTAAGCGTCCTGATGGCAAGGCAGACGAATGCAAATCTCTTTGAAACCGAAGAATCTATTTGAGAAATAAGTGGTCGCCAACTGAATGTGCTTCAAGCTAATTTGAATATTTTAATAGACCTTTCATTGTTGATACCCAAATCTTTTTCCTCAAACATTCTGTTTCCTATCACTCCTTGGCTTGATGAAATCTATCTGatctttttttttaatcaatgttGAAGGGAGACAATCGCATTCAataaaatcaaaaaaaaaaaaa
>XR_005052860.1
AAAATAAGCTTCCGGTTATGCGACGTCATTAGGGGCTTCCGCTTCCGGTAAAGGAGAACAATTTAAACGAAGAATGAAAAGAGGAgccatgcatgcatgcatgcatgcatacattcaTTCAACACGGatcatGGTGGGTGTCAGAGTGGTCTCTCCTGTCCTTTAGGGATCCCTCACAGTGAAGTATGAGGATCAGAGTACAGCTGGACTGTGGAAGTCTGTTTCTCCTACCCAGTCAACAGAGAACATCTCCACAAGTTCAAACACATCTATGGAAACGTTTTTCACCTACTTCTGTAATCTGGATGAAGACGCACACCACCCTCTGAAGCTGCTACCAGAGTATGTCTATATAGTCTACTACAAGTTTGAAtgcatgaccaaagGGTCTGACATCTAAGCGTCCTGATGGCAAGGCAGACGAATGCAAATCTCTTTGAAACCGAAGAATCTATTTGAGAAATAAGTGGTCGCCAACTGAATGTGCTTCAAGCTAATTTGAATATTTTAATAGACCTTTCATTGTTGATACCCAAATCTTTTTCCTCAAACATTCTGTTTCCTATCACTCCTTGGCTTGATGAAATCTATCTGatctttttttttaatcaatgttGAAGGGAGACAATCGCATTCAataaaatcaaaaaaaaaaaaa
>XR_005052862.1
TaaaatggagggaggaggtggccGGTTTTACCTTAACCTCGAAGGGACTCCTCCTCTCTTGCCTCTAACGCCTGCGTTTCCTCCTGGATACTCCGAAAATTGGatcatGGTGGGTGTCAGAGTGGTCTCTCCTGTCCTTTAGGGATCCCTCACAGTGAAGTATGAGGATCAGAGTACAGCTGGACTGTGGAAGTCTGTTTCTCCTACCCAGTCAACAGAGAACATCTCCACAAGTTCAAACACATCTATGGAAACGTTTTTCACCTACTTCTGTAATCTGGATGAAGACGCACACCACCCTCTGAAGCTGCTACCAGAGTATGTCTATATAGTCTACTACAAGTTTGAAtgcatgaccaaagGGTCTGACATCTAAGCGTCCTGATGGCAAGGCAGACGAATGCAAATCTCTTTGAAACCGAAGAATCTATTTGAGAAATAAGTGGTCGCCAACTGAATGTGCTTCAAGCTAATTTGAATATTTTAATAGACCTTTCATTGTTGATACCCAAATCTTTTTCCTCAAACATTCTGTTTCCTATCACTCCTTGGCTTGATGAAATCTATCTGatctttttttttaatcaatgttGAAGGGAGACAATCGCATTCAataaaatcaaaaaaaaaaaaa
>TU795399
catgcatgcatacattcaTTCAACACGGatcatGGTGGGTGTCAGAGTGGTCTCTCCTGTCCTTTAGGGATCCCTCACAGTGAAGTATGAGGATCAGAGTACAGCTGGACTGTGGAAGTCTGTTTCTCCTACCCAGTCAACAGAGAACATCTCCACAAGTTCAAACACATCTATGGAAACGTTTTTCACCTACTTCTGTAATCTGGATGAAGACGCACACCACCCTCTGAAGCTGCTACCAGAGTATGTCTGTACGTGTAGAACTTTTTTCAATAGTTACCTTCAGAATTGACTTCAGGTTACTTTTTTGCGTGCATTTTCTGAGGGCTTCTGAAATTGTCAAGTGTAATTATATTTATGCAAAATCTGTGCAGCCACATACTGTAGTTTTATGTTCCTCAGCTGTTAATCCAGATCAGAACGGTTCAGATTGACGTTTGCTAATTTCCCTTGAGCCTTCTGCATTGTGTTTCTGATTAATATAAGTTTGAGATTTTCAACAAACAAGAGGCATGGTCTATATATCTGCATATAAACTCCATTTTTTTTCTTGTATAGATATAGTCTACTACAAGTTTGAAtgcatgaccaaaggtCTGACATCTAAGCGTCCTGATGGCAAGGCAGACGAATGCAAATCTCTTTGAAACCGAAGAATCTATTTGAGAAATAAGTGGTCGCCAACTGAATGTGCTTCAAGCTAATTTGAATATTTTAATAGACCTTTCATTGTTGATACCCAAATCTTTTTCCTCAAACATTCTGTTTCCTATCACTCCTTGGCTTGATGAAATCTATCTGatctttttttttaatcaatgttGAAGGGAGACAATCGCATTCAataaaatcaaa
>TU795400
catgcatgcatacattcaTTCAACACGGatcatGGTGGGTGTCAGAGTGGTCTCTCCTGTCCTTTAGGGATCCCTCACAGTGAAGTATGAGGATCAGAGTACAGCTGGACTGTGGAAGTCTGTTTCTCCTACCCAGTCAACAGAGAACATCTCCACAAGTTCAAACACATCTATGGAAACGTTTTTCACCTACTTCTGTAATCTGGATGAAGACGCACACCACCCTCTGAAGCTGCTACCAGAGTATGTCTATATAGTCTACTACAAGTTTGAAtgcatgaccaaaggtatgtggacacatTCTCATCAAACAGCTTATTAGacattgttacagcctgaacaAATATAATAGCAATGTAAAATGTGGATATTCTAAATGTTAGGGTCTGACATCTAAGCGTCCTGATGGCAAGGCAGACGAATGCAAATCTCTTTGAAACCGAAGAATCTATTTGAGAAATAAGTGGTCGCCAACTGAATGTGCTTCAAGCTAATTTGAATATTTTAATAGACCTTTCATTGTTGATACCCAAATCTTTTTCCTCAAACATTCTGTTTCCTATCACTCCTTGGCTTGATGAAATCTATCTGatctttttttttaatcaatgttGAAGGGAGACAATCGCATTCAataaaatcaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052863.1 False 554 mRNA 0.40 4 33409803 33410951
XR_005052861.1 False 665 mRNA 0.39 4 33409803 33411406
XR_005052860.1 False 658 mRNA 0.40 4 33409803 33411530
XR_005052862.1 False 634 mRNA 0.42 4 33409803 33413009
TU795399 False 855 lncRNA 0.38 3 33409813 33411431
TU795400 True 645 lncRNA 0.39 3 33409813 33411431

Neighbor

gene id symbol gene type direction distance location
LOC110529232 NA coding downstream 3951 33390977 ~ 33405852 (-)
LOC110529821 LOC106571616 coding downstream 397813 32977796 ~ 33011990 (-)
LOC110529818 rnaseh1 coding downstream 727277 32670745 ~ 32682526 (-)
myt1la LOC106571614 coding downstream 770954 32590298 ~ 32638849 (-)
cep43 LOC106571617 coding downstream 819915 32570016 ~ 32589888 (-)
ints9 ints9 coding upstream 13508 33426517 ~ 33435877 (-)
LOC110529827 LOC106606921 coding upstream 41278 33454287 ~ 33458472 (-)
LOC110529828 LOC106571602 coding upstream 71792 33484801 ~ 33549308 (-)
LOC110529832 fbxo16 coding upstream 272360 33685369 ~ 33689052 (-)
cdc42bpab LOC106571585 coding upstream 306365 33719374 ~ 33822238 (-)
G698742 NA non-coding downstream 134851 33274665 ~ 33274952 (-)
G698729 NA non-coding downstream 142654 33266871 ~ 33267149 (-)
G698663 NA non-coding downstream 194834 33214729 ~ 33214969 (-)
G698474 NA non-coding downstream 321195 33088396 ~ 33088608 (-)
G698373 NA non-coding downstream 403158 33006416 ~ 33006645 (-)
G698986 NA non-coding upstream 8427 33421436 ~ 33424015 (-)
G699093 NA non-coding upstream 173410 33586419 ~ 33586673 (-)
G699309 NA non-coding upstream 208669 33621678 ~ 33622113 (-)
G699311 NA non-coding upstream 213230 33626239 ~ 33626569 (-)
G699323 NA non-coding upstream 234427 33647436 ~ 33647645 (-)
G698356 NA other downstream 419742 32989245 ~ 32990061 (-)
G697774 LOC106571626 other downstream 910393 32498799 ~ 32499410 (-)
LOC110529804 ypel5 other downstream 1192254 32214451 ~ 32217572 (-)
LOC110529793 LOC106571728 other downstream 1730068 31657632 ~ 31703525 (-)
G696499 NA other downstream 1931776 31477354 ~ 31478027 (-)
G699468 NA other upstream 530013 33943022 ~ 33952356 (-)
ankef1a LOC106571587 other upstream 610282 34017010 ~ 34029131 (-)
G701454 NA other upstream 2169989 35582998 ~ 35589877 (-)
LOC110529865 LOC106571568 other upstream 2228346 35633473 ~ 35705333 (-)
G701618 LOC106571560 other upstream 2487614 35900623 ~ 35918175 (-)

Expression


Co-expression Network