LOC110529823 (LOC106571612)


Basic Information

Item Value
gene id LOC110529823
gene name LOC106571612
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33411718 ~ 33424020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612381.2
TCAACGCTCAGATGTAGTTGCTTCCATCTTGGCACATTGAGGTGGATGTTTGCGCCTGAACTGAACTAAAAAACCTATAGAGTTTGTACTGTCTTTGGCTaaactgtgttgctgtctgtctaTAATTCAACACAATATTTTGCTAAAGTCTAACGAAAACCATGAACAACCTAATTCGGTCAACTGTTCGCTGTTTTCGGCTGAGTTCGTCGGTTTATCTACCGAGGCAAGTTGATGGACAAAATGTGTCGTTGCCAACATTGAAGTCTTCGGCCCGGCTCATGTGTTCGGCGCCCTTACAGAAAGATCTTGGCGATATGGTGAAAAAAGACAAGGTGGTGGTGTTTATGAAAGGGACGCCTGCCCAGCCGATGTGTGGCTTCAGTAATGCCGTGGTTCAGATCTTGAGGATGCATGGTGTGAATGAATATGCTGCATATAACGTGTTGGATGACCAGGATCTCAGACAAGGAGTGAAGGACTTCTCCAACTGGCCCACAATCCCACAGATCTTCTTAAATGGCGAGTTTGTGGGCGGCTGTGACATCTTCCTACAGATGCACCAGAACGGAGACCTGGTAGAGGAGCTCCAGAAGCTGGGGATCCGCTCTGCACTGGTGGACGCCGAAAAGGAATCCAAGTAGACAAACCCGTCAGTCGATGTCCAGTCCAGAGAAAGCTAGAGGTGGACTGTATTGTCCAGTCTCTGGTTGACTTTTAGGCCCGTTAACCCTGCACTTGTGTAGATCTGAGAAAATTGGTTAGATATACTTGTAAGCCATATAGGGGACGCTCCACCTTGTAAGCCACATTGTGAAAGTTCTCCAAAGACATTGGCAAGGTAGAGCTATTCGAATGTTGTTacatacattttagtcatttagcagacactcttatccacagCGACTTACAGGAGAAGTATTTAGAGTGaagagccttgctcaaggacacagacagattttttcaccAAGTTGAGTCAGGGATTCAaacaagcaacctttcggtttctggcccaacgctcttaaacaCTAAGCAACATGTCCAGTAATTTCAGATCTACACAAGAGCCTAGGGGGATAGGGGCTAAGGGTTGATTTGGGATTGGGCATTTGAAGTGGTGGCTGAGCCCCAGTGTCCCTTCCACAAGCCCTATAAGAAGGTGTGTGTGATACTATAGAACCTGCTGAAGAACAAACTGCCCTCAGGTGACTAGGATATGAGATGTCAAACCAACACCCATATGATACCTCCAAAACCCACtgcctgtacagtgccttcagaaagtatccacacccctcgacttttttCTACATTTAGTTGTTAccgactgaatttaaaatggattaaattaagatTTTGTATCACTGgattacacacaatacaccataatgtcaaagtggaattatgtttttagacatttttacaaaataattcaaaatgaaaagctgaaatgtattcaaccccttcatggtaagcctaaatacattcaggagtaaAACATTTATTCGGTTGCATTGACTCACTGTGTGTAAcaatggtgtttaacatgatctTTGAATGacgacctcatctctgtacttctaacacacaattatctgtaaggtccctcagtcgagcagtgaatttcaaacacagattcaaccacaatggccagggaggttttccaatgccctgCAAAGAATGGTACCTAtgatgggtaaaaaaaatgttaacacagacattgaatattcctttgagcatggtgaagttattaattacatgtTGGATGGTATATCGATactcccagtcactacaaagatacagggtccttcctaactcagctactgaggatggatcaacaacattgtctttactccacaatactagccTAAATGCCATGGTGAAAAGGGGAAGCCTGTAccgaatacaaatattccaaaacatgcatcctgtttgcaataaggcactaaagtaaaacttcaATAACTGGTCAGGAAatatcctgaatacaaaatgttatgtttcgGGCAAGCACAAcaaatcactgagtaccactcttcatattttcaagcatggtggtctctgcatcatgttatgggtatgcttgtcatcgtcaAGGACGAGGGAGTTTTAAGGTAAAAAATAAACAGTAGAGCTAAACACATGCAAAATTTGAGAGTAAAatctggtttagtctgctttccaacagacactgggaggcaaattcatctttcagcaggacagtaccctaaaacacgaggccaaatatacactggatttGCTTACCAAGACCACATTGAATGATCCTGTATGGCCtatttacagttttgacttaaataggcttcaaaatctatggcaagacttgaacatggctgtctagtaatgatcaacaaccaacttgacagagctggaAGAATTTTTAAAAGATTAATGTGCCATTATTgaccaatccaggtgtgcaaagatgATACTAAGACGTATTGACTctggtgtgaatacttgtgtaaatgagatttctgcatttcatattcaatacattttctaaaaacatgttttcactttgtcattatggggtattgtgtgtagatggttaaAGGGGAAAAAACtaaaatccattttgaattcgggctgtaacaaaatttggaataagtcgagaggtatgaatactttctgaaggcactgtatatgttaagTTTTCAAATATAGTATCTCACGCTTATTTTCACTGAAGCATTTGTAGGTCCGCTCAAACGCAATAATCCACTTCCTCTTTTCTTTCTTCCTCAAGATGTTCACTTACCGGTATTTAATTAGAGAAGGGAAAAGTAATGTGATGGGTACCTTGCTTTTTGTCTTGTCTAATTTGTCAACTCAGTAGTCATGTCAAGGAAGGAATGAAGTACGGGAGGTTACACTTTTTAATGTATTCAAAACAGGGCCCTACTTCATGACAATCAATACATTTTCACCTGCTGCTTACATACATGTATTATCTAATGCTCATGTAGTACACtgtatatttaatatattttacatttaaaggATATATGTATTTGATCAATTAAATATTTTACAACACAAA
>XR_005052859.1
TCAACGCTCAGATGTAGTTGCTTCCATCTTGGCACATTGAGGTGGATGTTTGCGCCTGAACTGAACTAAAAAACCTATAGAGTTTGTACTGTCTTTGGCTaaactgtgttgctgtctgtctaTAATTCAACACAATATTTTGCTAAAGTCTAACGAAAACCATGAACAACCTAATTCGGTCAACTGTTCGCTGTTTTCGGCTGAGTTCGTCGGTTTATCTACCGAGGCAAGTTGATGGACAAAATGTGTCGTTGCCAACATTGAAGTCTTCGGCCCGGCTCATGTGTTCGGCGCCCTTACAGAAAGATCTTGGCGATATGGTGAAAAAAGACAAGGTGGTGGTGTTTATGAAAGGGACGCCTGCCCAGCCGATGTGTGGCTTCAGTAATGCCGTGGTTCAGATCTTGAGGATGCATGGTGTGAATGAATATGCTGCATATAACGTGTTGGATGACCAGGATCTCAGACAAGGAGTGAAGGACTTCTCCAACTGGCCCACAATCCCACAGATCTTCTTAAATGGCGAGTTTGTGGGCGGCTGTGACATCTTCCTACAGATGCACCAGAACGGAGACCTGGTAGAGGAGCTCCAGAAGCTGGGGATCCGCTCTGCACTGGTGGACGCCGAAAAGGAATCCAAGTAGACAAACCCGTCAGTCGATGTCCAGTCCAGAGAAAGCTAGAGGTGGACTGTATTGTCCAGTCTCTGGTTGACTTTTAGGCCCGTTAACCCTGCACTTGTGTAGATCTGAGAAAATTGGTTAGATATACTTGTAAGCCATATAGGGGACGCTCCACCTTGTAAGCCACATTGTGAAAGTTCTCCAAAGACATTGGCAAGGTAGAGCTATTCGAATGTTGTTacatacattttagtcatttagcagacactctttttcaccAAGTTGAGTCAGGGATTCAaacaagcaacctttcggtttctggcccaacgctcttaaacaCTAAGCAACATGTCCAGTAATTTCAGATCTACACAAGAGCCTAGGGGGATAGGGGCTAAGGGTTGATTTGGGATTGGGCATTTGAAGTGGTGGCTGAGCCCCAGTGTCCCTTCCACAAGCCCTATAAGAAGGTGTGTGTGATACTATAGAACCTGCTGAAGAACAAACTGCCCTCAGGTGACTAGGATATGAGATGTCAAACCAACACCCATATGATACCTCCAAAACCCACtgcctgtacagtgccttcagaaagtatccacacccctcgacttttttCTACATTTAGTTGTTAccgactgaatttaaaatggattaaattaagatTTTGTATCACTGgattacacacaatacaccataatgtcaaagtggaattatgtttttagacatttttacaaaataattcaaaatgaaaagctgaaatgtattcaaccccttcatggtaagcctaaatacattcaggagtaaAACATTTATTCGGTTGCATTGACTCACTGTGTGTAAcaatggtgtttaacatgatctTTGAATGacgacctcatctctgtacttctaacacacaattatctgtaaggtccctcagtcgagcagtgaatttcaaacacagattcaaccacaatggccagggaggttttccaatgccctgCAAAGAATGGTACCTAtgatgggtaaaaaaaatgttaacacagacattgaatattcctttgagcatggtgaagttattaattacatgtTGGATGGTATATCGATactcccagtcactacaaagatacagggtccttcctaactcagctactgaggatggatcaacaacattgtctttactccacaatactagccTAAATGCCATGGTGAAAAGGGGAAGCCTGTAccgaatacaaatattccaaaacatgcatcctgtttgcaataaggcactaaagtaaaacttcaATAACTGGTCAGGAAatatcctgaatacaaaatgttatgtttcgGGCAAGCACAAcaaatcactgagtaccactcttcatattttcaagcatggtggtctctgcatcatgttatgggtatgcttgtcatcgtcaAGGACGAGGGAGTTTTAAGGTAAAAAATAAACAGTAGAGCTAAACACATGCAAAATTTGAGAGTAAAatctggtttagtctgctttccaacagacactgggaggcaaattcatctttcagcaggacagtaccctaaaacacgaggccaaatatacactggatttGCTTACCAAGACCACATTGAATGATCCTGTATGGCCtatttacagttttgacttaaataggcttcaaaatctatggcaagacttgaacatggctgtctagtaatgatcaacaaccaacttgacagagctggaAGAATTTTTAAAAGATTAATGTGCCATTATTgaccaatccaggtgtgcaaagatgATACTAAGACGTATTGACTctggtgtgaatacttgtgtaaatgagatttctgcatttcatattcaatacattttctaaaaacatgttttcactttgtcattatggggtattgtgtgtagatggttaaAGGGGAAAAAACtaaaatccattttgaattcgggctgtaacaaaatttggaataagtcgagaggtatgaatactttctgaaggcactgtatatgttaagTTTTCAAATATAGTATCTCACGCTTATTTTCACTGAAGCATTTGTAGGTCCGCTCAAACGCAATAATCCACTTCCTCTTTTCTTTCTTCCTCAAGATGTTCACTTACCGGTATTTAATTAGAGAAGGGAAAAGTAATGTGATGGGTACCTTGCTTTTTGTCTTGTCTAATTTGTCAACTCAGTAGTCATGTCAAGGAAGGAATGAAGTACGGGAGGTTACACTTTTTAATGTATTCAAAACAGGGCCCTACTTCATGACAATCAATACATTTTCACCTGCTGCTTACATACATGTATTATCTAATGCTCATGTAGTACACtgtatatttaatatattttacatttaaaggATATATGTATTTGATCAATTAAATATTTTACAACACAAA

Function

NR:

description
glutaredoxin-related protein 5, mitochondrial-like

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0045454 cell redox homeostasis biological_process
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG:

id description
K07390 grxD, GLRX5; monothiol glutaredoxin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612381.2 False 3061 mRNA 0.40 2 33411718 33424020
XR_005052859.1 True 2995 mRNA 0.40 3 33411718 33424020

Neighbor

gene id symbol gene type direction distance location
allc allc coding upstream 715048 32691529 ~ 32696670 (+)
rps7 LOC106608110 coding upstream 725112 32682432 ~ 32686606 (+)
LOC118965650 NA coding upstream 725327 32686167 ~ 32686391 (+)
LOC118965649 NA coding upstream 726264 32685230 ~ 32685454 (+)
LOC118965651 NA coding upstream 726789 32684705 ~ 32684929 (+)
LOC110529826 LOC106571610 coding downstream 12268 33436288 ~ 33445632 (+)
LOC118965509 LOC106571610 coding downstream 22401 33446421 ~ 33453220 (+)
sf3b6 sf3b6 coding downstream 56189 33480209 ~ 33484404 (+)
LOC110529830 LOC106571599 coding downstream 232613 33656633 ~ 33680837 (+)
fzd3a fzd3 coding downstream 265194 33689214 ~ 33719635 (+)
G698833 NA non-coding upstream 982 33409828 ~ 33410736 (+)
G698731 NA non-coding upstream 142045 33268729 ~ 33269673 (+)
G698727 NA non-coding upstream 146012 33265491 ~ 33265706 (+)
G698688 NA non-coding upstream 173162 33238311 ~ 33238556 (+)
G698586 NA non-coding upstream 215675 33195260 ~ 33196043 (+)
G698842 NA non-coding downstream 24788 33448808 ~ 33449323 (+)
G698843 NA non-coding downstream 25493 33449513 ~ 33450149 (+)
G698844 NA non-coding downstream 26279 33450299 ~ 33450566 (+)
G698848 NA non-coding downstream 45204 33469224 ~ 33469463 (+)
G699117 NA non-coding downstream 196530 33620550 ~ 33620756 (+)
G694036 NA other upstream 3618971 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 4473445 28930668 ~ 28939888 (+)
G693207 NA other upstream 4705966 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 4853345 28495104 ~ 28605625 (+)
G692424 NA other upstream 5341490 28069900 ~ 28070228 (+)
G699605 NA other downstream 703573 34127593 ~ 34128301 (+)
LOC110529856 LOC106571576 other downstream 2030828 35454437 ~ 35462086 (+)
G700685 NA other downstream 2189144 35613164 ~ 35614666 (+)
G700864 NA other downstream 2480029 35904049 ~ 35904698 (+)
G702415 NA other downstream 3276418 36700438 ~ 36700739 (+)

Expression


Co-expression Network