LOC110529826 (LOC106571610)


Basic Information

Item Value
gene id LOC110529826
gene name LOC106571610
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33436288 ~ 33445632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612385.2
ggatctcgcaggctcgtgcttggctctgcccactatgactcatttgttcacattggaaacaacaggctgtggtctatcttggtttactGATAAAGTATTTGACTTCATCGTCACAACAAATGTTCCCGACTTGTTCCCAACGAGAAACTGCTGCACTGATCTGAGGTGCAAGTTGAGTCTATTCGCAGGAATGGGAAATTCAACCACCTGTAGTAACCATCTGGGGATCCCCCCAGCAAAAGGTCCCAATGCCGTGGGATGTTCAGATTTCATGATGGATCATACTGTAAAGGGTACCTTCTTTCGGCTATACTATCCATGTGTAGCATACGAGGATGCGGAAAAACCAGACTGGATCCCAAGCAAAGAATATTTCTATGGGCTTGCAGACTTCATGAACATCAACAGAGGCCTGAGTGAACAGATTTTTAATTACCTCTTTGgATCTTTTAAGATACCTGCTGCCATGAATGCCCCATATAAACAGAATGGGAAGTGTCCAGTAATTGTCTTCTCTCATGGACTTGGAGCTTTCAGaactttatattcagccatatgcgCAGAACTGGCCTCACAGGGCTTCATAGTAGCAGCAGTGGAACACAGGGATGAATCTGCCGCTGCCACATTCTTCTACCATGGAAAGACTGAAGAACctgaggagaaagaagaggagtcGCTGCCGCCTAAACCCAACCCCGAGGCCCCAGAGAACCTGGTAGAGGAATGGATGTACTACAGATCTCTGAAACCAGGCGAGAGTGAATTCCCCCTCAGGAATAAACAGGTGTTACAGAGAGCCGATGAATGCTTAAAGGCTTTGGATATACTCATCCAAATCAACTCGGGAAAGAAGATGGAGAACGTGCTCGGGACAGAGTTTGACTGGATGACTTTGGCGAACTCTATGGACTTGTGCCGGATAGCAGTGATGGGCCATTCTTTCGGTGGAGCAACAGTGATCGAAGCCCTCTGCAATGAGGTCAACTTCAAGTGTGGCATTGCCCTGGACGCGTGGATGTTCCCCCTGGATGAGGAGATCTACGCCAGGGTAAAGCAGCCCATCTTCTTCATCAACTCTGAGAAGTTCCAGTGGGCCGGGAACATCATGGCCATGAGGAAACTAGTCCCACCTGACTCCTCCTCCACACAGAGGAAAATGGTCACCATTAAGGGAACGGTTCACCAGAGCTTCCCAGACTTCACCTTCCTGACAGGCAATTGGATCGGGAAGATCCTGAAGCTGAAAGGAGAAATCAACCCTCAGGTTGCCATCGATCTCTGTAATAAAGCATCGCTAGCATTCCTGCAGCGACATCTAGGTATGGATAAAGACTTCAATCAATGGGACCATCTAATAGAGGGCAAGGACGACAACCTCATTCCAGGCACCAATGTCACAGAACTACCTTAGTTCAATTCCATCTAAACTATGCACTTTACACAGAGGGGATGTTTGATTTCCAGACAATACCACTAGCTGAACTTAAAGTGCCAATATTTGTTGCACTGAGCCTTGAAACTGTTTAATCATAGACAAAATGTAAAATAGATGCAAAGCAATTTCTACTACAGGCCATCTTAACCAGTACCTAATTATGATTGCTCGGCGAGGGTGCATATCTCCAAGTATTGAGAAACTGCTTTTTTTGGTTTCATAGTATCTATATAGAGCATCTAAGAACACAATCTGCTGTACTCAGTATGTTTTACATGAACAAAGTTATGGTTGCAGTGTGCTATGCGATTATACACCTGTATGGGATATTATTCAAGAGTACGGTTTTGAAATTGTTTGGATCAAGGAGTCTTAATACAGTTTCAAGATTTCATTTTATAACCCCTAGATGGTTAATGTGATTACGACTTTGATGAAATATTTGGTGTTTATTTAGCAGGATTGCACAGAGTACAGATTGAGATCATGTAGCATAGATACAAGAATCGAACAAATTGATTACACTTAGCTCACAAAGGATGAGATGTTTCTCGATTCCTTTGAATCAGATCCATAAATGTGTCATGTGCCTTAACCTACAGCAGCCTACCTGTGTCCTTCCACCTGGGTTGTATTTGTTAGTCACCAAACGGAAAACTCATGTACACAACCCGAACTTGCCAATGAGAAACGCTCCTTTTccgttttctgttgcaaaactttCAGTagtgtggcctaatgtagtttcTTAACTCCTCGGGTTAACCCCAACAGCACATATTATTGTTGTAGCCCCAGACAAACTGATTCTACTcggagggcttgatgattagttgacaagttgaatcacgTGTGCTTGTCTGGGCCTCAACAATGTGTGCTGTTTGGGGtattggaggactggagttggggaaACACTGCACTAATAAATAGAACCATGGAACACTCAAATGTAACAGCTTATTTTTCTGTGCTTCATTTCCATGCTTTTCATATTTACACTACTGTAATCCAACGCATCTCATTTGTATACAACTATAAATGGATACTGTGAACA

Function

NR:

description
platelet-activating factor acetylhydrolase-like

GO: NA

KEGG:

id description
K01062 PLA2G7, PAFAH; platelet-activating factor acetylhydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612385.2 True 2495 mRNA 0.44 11 33436288 33445632

Neighbor

gene id symbol gene type direction distance location
LOC110529823 LOC106571612 coding upstream 12268 33411718 ~ 33424020 (+)
allc allc coding upstream 739618 32691529 ~ 32696670 (+)
LOC118965650 NA coding upstream 749897 32686167 ~ 32686391 (+)
LOC118965649 NA coding upstream 750834 32685230 ~ 32685454 (+)
LOC118965651 NA coding upstream 751359 32684705 ~ 32684929 (+)
LOC118965509 LOC106571610 coding downstream 789 33446421 ~ 33453220 (+)
sf3b6 sf3b6 coding downstream 34577 33480209 ~ 33484404 (+)
LOC110529830 LOC106571599 coding downstream 211001 33656633 ~ 33680837 (+)
fzd3a fzd3 coding downstream 243582 33689214 ~ 33719635 (+)
LOC110529835 LOC106571598 coding downstream 377439 33823071 ~ 33828774 (+)
G698804 NA non-coding upstream 9277 33368943 ~ 33427011 (+)
G698833 NA non-coding upstream 25552 33409828 ~ 33410736 (+)
G698731 NA non-coding upstream 166615 33268729 ~ 33269673 (+)
G698727 NA non-coding upstream 170582 33265491 ~ 33265706 (+)
G698688 NA non-coding upstream 197732 33238311 ~ 33238556 (+)
G698842 NA non-coding downstream 3176 33448808 ~ 33449323 (+)
G698843 NA non-coding downstream 3881 33449513 ~ 33450149 (+)
G698844 NA non-coding downstream 4667 33450299 ~ 33450566 (+)
G698848 NA non-coding downstream 23592 33469224 ~ 33469463 (+)
G699117 NA non-coding downstream 174918 33620550 ~ 33620756 (+)
G694036 NA other upstream 3643541 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 4498015 28930668 ~ 28939888 (+)
G693207 NA other upstream 4730536 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 4877915 28495104 ~ 28605625 (+)
G692424 NA other upstream 5366060 28069900 ~ 28070228 (+)
G699605 NA other downstream 681961 34127593 ~ 34128301 (+)
LOC110529856 LOC106571576 other downstream 2009216 35454437 ~ 35462086 (+)
G700685 NA other downstream 2167532 35613164 ~ 35614666 (+)
G700864 NA other downstream 2458417 35904049 ~ 35904698 (+)
G702415 NA other downstream 3254806 36700438 ~ 36700739 (+)

Expression


Co-expression Network