LOC118965509 (LOC106571610)


Basic Information

Item Value
gene id LOC118965509
gene name LOC106571610
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33446421 ~ 33453220 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985340.1
AAAACCTACTAGTCACTGGACTGGCTTCCTCTTTGGCTACTGCTCCAGCGTTTCCTGGGTGGGCCGGGCCGAGTCTCTTTCCCAGAACTTTATGGACTTGTGCCGGATAGCAGTGATGGGCCATTCTTTCGGTGGAGCAACAGTGATCGAAGCACTCTGTAAAGAGGTCAACTTCAAGTGTGGCATTGCCCTGGACGTGTGGATGTTCCCCCTGGATGAGGAGATCTACGCCAGGGTAAAGCAGCCCATCTTCTTCATCAACTCTGAGAAGTTCCAGTGGGCCGGAAACATCATGGCCATGAGGAAACTGGTCCCACCTGACTCCTCCTCCACACAGAGGAAAATGGTCACCATTAAAGGAACGGTTCACCAGAGCTTCCCAGACTTCATCTTCCTGACAGGCAACTAGATCGGAGATCCTGAAGCTGAAAGGAGAGATCAACGCTCAGGTTGCCATCGATCTCTGTAGCATTGCTAGCATTCCTGCAGCGACATCTAGAAACCTGGAATAACCTGGAAAATCATTTGGAGTTCCTGCACAACACACTCGTCACTGGACTGGCTTCATCTTTGGCTACGGCTCCAGCGTTTCCTGGGTGGGCCGAGTCTCTGACACAAAGACGACGTCATCGTTGCATTTCTCCTCCACTCTCAGGGTGAGATGCTTCACCTGTGACATCCCAACTTCTGTATGGAAGAAAGGTGAGGGTAGAGACGTGATCAGGAAATCAGAGAAGATCAGGAAAAATAAGACATTTGTTTAaatggagaggaagaggcaaagcgagaggATTTACTTAGCCCAAAATCTGTCAGCGTGAGATAAGCACTGTTTTTGCATGGAGGTCTATGGCAGTGTCAAATTACGTGACgcttatttgatctaatagaCGTTTTGTAACGTTTACTGTTActgtactgatataagtggatGCACGTGGCATTCctgcaactttgagaaaaaacggcttagttgtgcctgttgttcacatgcctatctgccctctcattggctagaatggtcccacctgatctcgccaGCCTTCAATCATTGaggacatgtacagtacagtgagctccaaaataATTGGGAGAGTGATATATATTCGTTTCGACTCtgcactccagcactttggatttgaaatgatgaaatgactatgaggttaaagtgtagactgtcagctttaatttgagggtattttcatccatatcgggtgaaccgtttagaaatgataGCACATTTTGTACATAGtcaccccattttaggggaccaaaagtattgggacaaattaacTTATGTGTATTAAGGTAGTCAAGTATTAAGGTAGTTTAGTATTTGGTCTGTTGGGTTTtgagaatatgaaatatacttattcatgtcactgagggagagagggtaatgtataatgtttacattatgtcaggatatgttgttgttagccatcagggatcctATGGGAAGGATCCTCTGTGAGGAGAAGAAACACAGTCTGGTACCAGTTACCATGACAGatgtgagttggggaggagtgagaggtcaggtcagatgaagtgaggaagaacagatgtCACTAAagttctgtctagcaacagagatgcattggctgttcggttgtgtaggaggagactcagcctaggaaaaagggttaaatatcagtgcttgtgtgaaaatgtatttgtctaatgcagctgtattgatccTCTGGGAAGAATTACACTTGGTTAATCTTTCACAGTGTCCGGTGAGTttttttactctgagaattagaacctgACAGGTTCCATATTTCTAGCACACAAtaattacatcaagcttgtgactacaaactcgttggatgcatttgctgttttggTTGGGTTTCATaatattttgtgcccaatagaaatgaat

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016042 lipid catabolic process biological_process
GO:0003847 1-alkyl-2-acetylglycerophosphocholine esterase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985340.1 True 1891 mRNA 0.44 4 33446421 33453220

Neighbor

gene id symbol gene type direction distance location
LOC110529826 LOC106571610 coding upstream 789 33436288 ~ 33445632 (+)
LOC110529823 LOC106571612 coding upstream 22401 33411718 ~ 33424020 (+)
allc allc coding upstream 749751 32691529 ~ 32696670 (+)
LOC118965650 NA coding upstream 760030 32686167 ~ 32686391 (+)
LOC118965649 NA coding upstream 760967 32685230 ~ 32685454 (+)
sf3b6 sf3b6 coding downstream 26989 33480209 ~ 33484404 (+)
LOC110529830 LOC106571599 coding downstream 203413 33656633 ~ 33680837 (+)
fzd3a fzd3 coding downstream 235994 33689214 ~ 33719635 (+)
LOC110529835 LOC106571598 coding downstream 369851 33823071 ~ 33828774 (+)
LOC110529837 LOC106571584 coding downstream 397416 33850636 ~ 33886984 (+)
G698804 NA non-coding upstream 19410 33368943 ~ 33427011 (+)
G698833 NA non-coding upstream 35685 33409828 ~ 33410736 (+)
G698731 NA non-coding upstream 176748 33268729 ~ 33269673 (+)
G698727 NA non-coding upstream 180715 33265491 ~ 33265706 (+)
G698688 NA non-coding upstream 207865 33238311 ~ 33238556 (+)
G698848 NA non-coding downstream 16004 33469224 ~ 33469463 (+)
G699117 NA non-coding downstream 167330 33620550 ~ 33620756 (+)
G699121 NA non-coding downstream 172652 33625872 ~ 33626127 (+)
G699133 NA non-coding downstream 189898 33643118 ~ 33643326 (+)
G699141 NA non-coding downstream 201937 33655157 ~ 33655508 (+)
G694036 NA other upstream 3653674 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 4508148 28930668 ~ 28939888 (+)
G693207 NA other upstream 4740669 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 4888048 28495104 ~ 28605625 (+)
G692424 NA other upstream 5376193 28069900 ~ 28070228 (+)
G699605 NA other downstream 674373 34127593 ~ 34128301 (+)
LOC110529856 LOC106571576 other downstream 2001628 35454437 ~ 35462086 (+)
G700685 NA other downstream 2159944 35613164 ~ 35614666 (+)
G700864 NA other downstream 2450829 35904049 ~ 35904698 (+)
G702415 NA other downstream 3247218 36700438 ~ 36700739 (+)

Expression


Co-expression Network