LOC110529827 (LOC106606921)


Basic Information

Item Value
gene id LOC110529827
gene name LOC106606921
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33454287 ~ 33458472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612386.2
cacacaatgacattctagacgattctgtgcttccaactttgtggcaacagtttggggaaagccctttcttgtttcatcatgacaatgccctcgtgcacaaagTGAAGTCCATGCAGAAATGGGTAATCGAGATTGGTGTGcaggaacttgactggcctgcacagagccctgacctcaaccccataaaACACTTTTgaaatgaattggaatgctgactgcgagccaggcctaattgtccaaaatcagatgatgatgatgattttgattttggaatgagatgtttgacaagcagatgtccacatacttctggtcatgtaATGTATGGTGATTGTAAAGACATTGTGTTTTGAGTTCAACAAGGATCGTTGAGAAATAACAATTAGACCTACCAAAAGCTGAGAACCTCTCCTCTTTGATAGGGACAACTCGTTGCTTCCAAAGATGTTGATTTCTGCAATTGCATATTGAAATGTTATACAATCACAAGggcggagagtgagtgagaaaggcTCACTCATTACAGCAGCTGGTCTCAGCAAGGCAAGCACAGCTGAAGGACATACACTTCTATAAAAGGCATCATGAGGAAAATGCACTTTTACTGTTTTACAAATTCATGGTTTTATCCTCCCAGTAAATAGGATGTTTTGATTGAGGGGGCCAGGTAGAATGAGTAGCTTGCACCAGTGCAaccaatatttttttaaactcgcACAGCCAAGTCAAGGGGTTGCAAAATGCGACTAAAGGGTTGCAAAATGCGACTAAAGGGTTGCAGTCTGGGGCTATTCATCGAACACCTTGCGAGAGTTCATTTGACGCGTTTAGTCAAatgcaaacaacaacaaaatgtactCTGTTTATGTAAATTAGACTTGCTTACAGAACAGCTAGTTGATATCCAACCAGCAACTGATGCGGAGGTTGTGTCAAGTGCTCCCACACAGACAAGGTATGAGTTTTCTTGTAATGAGTGCCATTCACTGTGTCTTCATCAAACTGAACTATGAATACTCAAAATACTCCGTTCCATTTTAGGATGACGCCGTGCTTGAGGAAGACACCTCATGTCTTGGAGTGGCTATACGTCTCATTGAAGACTGTATGGTTATGTCATCACAGCTGATTGGATGGGTGTCAGCCAAATCCACACAGGGGCAAATGCACTCATGTTGTTTGTTGATTTAAATTATCGTTGTAAATACCCTTTTACAGTTGTGTCGACAGACCATGTGCTGAGATGAAGAAAGCTACCTAATGCAGATGTTGTATCAAGTGCGCCCCCCACAGGACAATGCAAGGACATTTGAAGTAGTAACCTAGAGAGGGagttgttgtataaatatatGCTCATTGGTTGGAACACATGTGATATTCTGTTCATTTATAGGATGATCTACCCGGGGAATCAACATCTAGTCCGTCTGCATGTAGTGAGAATATGAAACCTTTTGGTTCATTTCAGgctgttgtatttctgtgtacgTATTGACAACAATGTAAATGTTGCTGTGTCCAGAGAACAGGGAGCAGAGACTCAAGAGGTAACCAATGTGGAGGTTACATCCAGTGCTTCCACACAGGACAAGGAGGATCTACTCTGTACTAGAGAAGATTGTTTCGGTATGTGATCATGACAAATCAGACTTCCAACACAGCCATCTGCAGACGTGGTCAGACGACTCCTCGATTGTGGGGCGCATTCCACTGTATTGCACATTTATTTGCCAACGTGAATTGTCAGGGCTAATATCTTTGTGTTGTAGAGTGCGCGGGAACAGTTTGCTGAGATTGAAGAGAAAAGCCGGTATGAAGATTGTGTCCCGTGCTCCTACACAGGACACGGTAACAGAGCTGTAGAGTTAAGCTAGAGCGGTGCATCTTCACGTTGTCTGCATCGTGCAAGCTTCGAACGACACCAATGGTATTGTAATCCATGGGAGCCTGATGTGCTGCTTGAGGAAGAGACGCCGTCTCCTGGCGAACACACGGCACCACGTACTCTATGTTGTGGCTTTAAATGGGTTACAGAGTTGATGTTTAAGTTAATTCATTGAGCTGTATCTGAAGATATTTTCCTGACAGTTATTTACATATGGAATTGTATTAGAATTTGTGCTTTGGAGATTGGAGTGGTTGATGACTGGAAAGTGGCTGAGATCGTCAGTTTCCTACAGGAGGAGGTTCAGAGCAGCGCGACAAATGACAAGATCGTGCAACCAACAGAACGAGAGCAAACCATGGAACAAGTCATGCTCCTCCgatgaaatgaaaacaaaaagaCCCAACATGCCCTCTGCTGCAGCACTGCATACAGCCAGCCAGAAGGAACAAAACTGTCTATTCTGTGACAGTGCAGACCACAAATCAGAAAACTGTCCTGGCCACAATATTGCTACACGCAAAGAGAAACTAAAGAAAATTGGAAGATGCTTTGTATGTTTAGGACAGAAACACATAGCAAAATTCTGTAAAGTCAAAGATGTGCCATGTGCAACATGTGGAAGCAGACATCACATTGCTGTGTGTACCGGTAAGAGGAGTGAGGTGCAACCCCCTACTGTTTCTGAAGATGCTGTTGTTTCCTCAGTTATTCCCCATTCGGTGAAGATGAAACCAGATGGACAGAACACTGTGTTGCTACAAACGGCAAAGGCATGGGTAGAAGGCCCATCGGGCAGGAAGATAGCTCGTTGTTTACTAGATGGAGGCAGTCACATTGTCTGCTTCATACATGAAACCCTTGTGAAGGGCTTGAAGCTACCAGTAATCAGACAAGAGGCACTCACTCTTCACACGTTTGGCTCCTCTGCTCCAGCAACGTCCCAACGCAACACAGCGAAAGTCATCTTGGAAAATGTCTGGGACAAACAGCAGAGAATAGAGATAGAGGCAATTGAAACCCCACAAGTGTGCACAGCTGTGATGAAGGTTCCTGGTGAACAAATTCAACATGAGCTCAATAGAAGGGGACTGCAGCTTGCAGACTTTCCAGGAGATGACAATGATCCTGAACTCTCTGTcctgataggagcagactacTACTGGCAGATAGTATCAGGCAGAGTGGAGCGACTGACGGAGACGCTGGTTGCTTTAGAGAGCACCTTTGGATGCCGAGGCAACCTGTTGCCGAGGCAACCTGTATGTTCATCCCACTTGATGAAGACACACTAGTCTCCAAACAACTGCATGCATTCTGGGAGCTTGAGTCTCTGGGTATTATAAGCGAGAAACCACAGAACCCAGAGGAAAACGAGGCTCTACAGAGGTTCGAGGAAACAACCACCTTCAAAGATGGGCGATACCACGTGGAGTTGCCATGGAAACGAGAAATGCCAGAACTCCAAGACAACTATAGAATCGCCAAGAAGCGGCGAGGTCTGAAGAAAAGACTGAAGAAGGATGTGACGTTGTACAGCAGATACAATGAAGTAGTAGAGGACTACTTACAACAGGATATGGCAGAGGACGTGTCTAAGGACAACGCATCAAGTGCAGACAACGTAAAAACGTATGTGATCATACGGTATATACAATAATACTGTCTGATAACACAGGCCAATGAAGTAAGGATATTATTTTTCTTGATTGAGCAGGAATTTCTGCATTTCTGACATACATCATTGAAAATGTATCTACCATTTAAACcaaaggtaatatattatattgcAAAAATAGCCAAGTGactgctctaacaatggaaatacggTGAGCGCCAAaaatattgggacaaattcaccaATTAAATGTATTGAAGTAGTCAAATGTtttgtatttggtcccatattcctagcttGCAATGATTAGATCAAGCTTGTGAATCTACAaagttgttggatgcatttgctgttagttggggttgtgtttcagactattttgtgcccaatagaaatgaatggtaaataatataTTGTGTCATATTGGAGTCACttttttgtaaataagaatatgatATGTCTTTAAACACTTccacatgaatgtggatgctgcCATGATTGCGGATACTCCTGAATGCATCGTGAATACTGATGAGTGAGAAAGAGGCATaaatatcaccccccccccccccccccccac

Function

NR:

description
uncharacterized protein LOC110529827

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612386.2 True 4080 mRNA 0.43 2 33454287 33458472

Neighbor

gene id symbol gene type direction distance location
ints9 ints9 coding downstream 18410 33426517 ~ 33435877 (-)
LOC110529824 NA coding downstream 41278 33409803 ~ 33413009 (-)
LOC118965663 NA coding downstream 43135 33410866 ~ 33411152 (-)
LOC110529232 NA coding downstream 48435 33390977 ~ 33405852 (-)
LOC110529821 LOC106571616 coding downstream 442297 32977796 ~ 33011990 (-)
LOC110529828 LOC106571602 coding upstream 26329 33484801 ~ 33549308 (-)
LOC110529832 fbxo16 coding upstream 226897 33685369 ~ 33689052 (-)
cdc42bpab LOC106571585 coding upstream 260902 33719374 ~ 33822238 (-)
LOC110529836 LOC106571586 coding upstream 373200 33831672 ~ 33841602 (-)
LOC110529840 LOC106571603 coding upstream 517016 33975488 ~ 34009377 (-)
G698986 NA non-coding downstream 30272 33421436 ~ 33424015 (-)
G698742 NA non-coding downstream 179335 33274665 ~ 33274952 (-)
G698729 NA non-coding downstream 187138 33266871 ~ 33267149 (-)
G698663 NA non-coding downstream 239318 33214729 ~ 33214969 (-)
G699093 NA non-coding upstream 127947 33586419 ~ 33586673 (-)
G699309 NA non-coding upstream 163206 33621678 ~ 33622113 (-)
G699311 NA non-coding upstream 167767 33626239 ~ 33626569 (-)
G699323 NA non-coding upstream 188964 33647436 ~ 33647645 (-)
G699324 NA non-coding upstream 189236 33647708 ~ 33647983 (-)
G698356 NA other downstream 464226 32989245 ~ 32990061 (-)
G697774 LOC106571626 other downstream 954877 32498799 ~ 32499410 (-)
LOC110529804 ypel5 other downstream 1236738 32214451 ~ 32217572 (-)
LOC110529793 LOC106571728 other downstream 1774552 31657632 ~ 31703525 (-)
G696499 NA other downstream 1976260 31477354 ~ 31478027 (-)
G699468 NA other upstream 484550 33943022 ~ 33952356 (-)
ankef1a LOC106571587 other upstream 564819 34017010 ~ 34029131 (-)
G701454 NA other upstream 2124526 35582998 ~ 35589877 (-)
LOC110529865 LOC106571568 other upstream 2182883 35633473 ~ 35705333 (-)
G701618 LOC106571560 other upstream 2442151 35900623 ~ 35918175 (-)

Expression


Co-expression Network