LOC110529828 (LOC106571602)


Basic Information

Item Value
gene id LOC110529828
gene name LOC106571602
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33484801 ~ 33549308 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612387.2
acagacagagagagagagagagagagagagagagagagagagagagagagaaacaaagagagatagaaacaaagagggaaagagagagtcgTGATGCACACGGTCTGACGCTGCGCTTCATTGTATCCTCAGCgagtgtattagtgtgtgtagaCAGTCCTGCTTGCTTGTAGCATCCTCGGAACTGCATCAGTGAATTTCGACTAGGCTCATTTCTTTCCAAGGAAACCTCACCACAGGGGTCGACAGAAAAGTAAACAGTTTGACTAATAGCGTCTCTGTCCGCACATAACCCACTCTGAAGAAGAGCGCAAAGCCCCATTGACTTCGCACTCTTTCAAGACAAAATGGGAGCGAAAAACAGCAAGCTGACCCCGGAGGTGATGGAGGATCTGGTGAAGAGCACGGAATTTAATGAGCACGAGCTGAAACAGTGGTACAAAGGCTTCCTGAAAGACTGCCCCAGTGGACGACTCAATCTAGACGAGTTCCaacaactctatgtgaagTTTTTCCCCTACGGAGATGCTTCAAAGTTTGCCCAGCATGCATTCAGGACCTTTGATAAGAACGGGGACGGCACCATCGATTTCAGAGAGTTCATCTGTGCCCTGTCTATCACGTCTCGAGGCAGCTTCGAACAGAAACTCAACTGGGCCTTCAACATGTACGACCTGGATGGAGATGGCAAGATCACACGAGTGGAGATGCTGGAGATCATTGAGGCCATCTACAAGATGGTGGGGACTGTGATCATGATGAAGATGAACGAGGACGGCCTGACGCCCGAGCAGCGAGTGGACAAGATCTTCAGCAAGATGGACAAGAACAACGACGACCAGATATCACTGGACGAGTTCAAAGAGGCAGCAAAGAGCGACCCTTCCATTGTATTACTCCTGCAGTGTGACCTGCAGAAATAGAGGAGAAGGGGAGCTTGAGAACCGCCACAGACTGCACAGAAGATTCATGTTCCATTCAGTTTGCAGCTATTTCCACGGGAAAAAAATATGCTTGGACTACCTTTCAATGGATCCGCTTCTTGATGTTTGAAACACTTGTGTGCATGAGAATGTTATTTGCTAGAAACAATTTAtacgtacatatacacacacacacataacgagCTACACACACCCCACAAGATACAAACAAACTGCACACTCACTACACATTCACAATACGCACAAATATacagatatataaatattatatttcAATGACTGCCAAAATGTGAAGTGTGCAAAGTATTTTCCATACACTCATTCCACTGGAGCATCAGCGATGTGCTATGTTGAATTACGCTACAACTTATTATTCTGAGTTTACTGGCGCTAGCTACGTGTTTCATATATTGAGCAATGTCAGCCAAGTCAAATTCCTATGGTAACGTAACTGTTTCTGACAAACCAAGTATCTATTCTTCTAAAAGATTAGATTTGGATAGATAAAAGAGATGGATTGGTAGCCTATTCATCACAAACGTTTTCCTTCCAAATGTGCTTGTACTGTCGGTGAATATAAATTCATTTGCATGCCTTTAGGTTTTGCCTTAAAAATAATCTCCTTATTTTGCATCCTATAAGAATAACGAAGACAAAGCTTGTCAACGAAATGCCGTTAAACAGTTAAACATCCAATATTTGAATATGAAAAGCATATGACGGTATAGGTCACAAGTATTGATGAATGGGATGTAATTGTTTGTGATTTGTCAAGACATTATTTTTGTGGGAGCATGTTCCTTGTAGATAATAATAgttcataataataatagtaaacaTACCCCTATTTAAAATCTACCATCTCATGAGAACCATTTTGAATGAGGAGATATTGAATGTGGCATATTTAACGACAAAACCAAAAGTCTGTATGAATACAAGAAAAATATTTGGCTGAATTGGACCGAAAGAAATTAAATACACTGAAATAAAACCACCTCATCAGTATTGTCGGAGGAAGTATAGCTTATGAGGCATAACTAATGAGAGGCAATGTGACATCTATCTGAAAATGAGCTCAGCTCAATAACAATGTAGAGGTTTGAAGTGCATTTTATCCTACATATTATTGTTCCACTTAGTTTTGGTCTATGTCATCACACCATCTCTTCAATGAAGATACAGGTTGCATATCAATGTGCTGAATTCAATGAAGTTCCTGTCATGACTTTATTAATACCACTCATAGATATGAGGAAATTATCTAAGGCCAGAGCGACGTTGTGTTAGACATTGATTGATATTATCTCATACTGTTTGTCTCTTTCAGTTTAAAAAAGGAGTGTAAAAAAGGAACAATGTGTTGAAAGAACAAAGTGAATGCCATTCTTTATGAACCAAGCCAAGAGGACAAAAACCCTTCATGTTTTGGTAGGCTATAGTTTGCCCAATGTGTACCCAACGACGCGCTCCTCTTTCTTTTTTATTCCCCTCATTGAAGCACACACTGTATAGTAGTTCCTTTTTAGGTGCAGTGTATCCTGTCCTCCCATAAAGACAACTGCTTAGAAATAGCCCGAGACCcctggcctggtcccagatcggtttgTGCCATCTTGTCACGGCGCGACattggagttggcaagacagcacaaacagattcGGCTACAGGCTATTAGACCCCAGCTTGACTGGAAATATTAAGTAATTCACCTGTACACCTTCGTTGTCCCGGTACTGTGGATCTGTCTCCGTACGATGGTCACACGCAATCTCACAGACAGCTCTGGCCCGATTTGGACGAAACTTGGGTGAATAAtgcgtcttgccatagagatccagCGTTTACTAAATTACACCGATTGGCCCAAGGCAGGCGCTATAGTAATTAACAGAAATGTGTTTGTCACACGATCCCAATCGGCCCAAGGAAGGGCGCTGTATCATTGGTGGGGGaggacatgtttactgttgccttgttgaAAGATTGCAGACACTGCTTATATAAATCACTAGTTTTTGTTTCACATCTCATCTGCACATTTGGGAGGAGTTATTTGattcatttattttcaaattTACTGCGATAGGAAGACTAAGTCCACCATCATTCCTCAATAAATTAGGCTGACCGTCTGTAAATCTGAAACTTCACATGAACATCTTCGCCCAGAAATGCTTGTACTTATAACTATTATTAATCCGATACCAAATGTAAGCAAAGGCAACAGTGTCAACTGAAGGATTATTTTGTACATGTAGCATGTATTGTGTCCCCGATAACATGGCTGCACTACTCGTGTTGTGATTTAAACTAATAAAATAACTATGGTCTGTT

Function

NR:

description
PREDICTED: visinin-like protein 1 isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K19936 VSNL1; visinin-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612387.2 True 3282 mRNA 0.41 4 33484801 33549308

Neighbor

gene id symbol gene type direction distance location
LOC110529827 LOC106606921 coding downstream 26329 33454287 ~ 33458472 (-)
ints9 ints9 coding downstream 48924 33426517 ~ 33435877 (-)
LOC110529824 NA coding downstream 71792 33409803 ~ 33413009 (-)
LOC118965663 NA coding downstream 73649 33410866 ~ 33411152 (-)
LOC110529232 NA coding downstream 78949 33390977 ~ 33405852 (-)
LOC110529832 fbxo16 coding upstream 136061 33685369 ~ 33689052 (-)
cdc42bpab LOC106571585 coding upstream 170066 33719374 ~ 33822238 (-)
LOC110529836 LOC106571586 coding upstream 282364 33831672 ~ 33841602 (-)
LOC110529840 LOC106571603 coding upstream 426180 33975488 ~ 34009377 (-)
ankef1a LOC106571587 coding upstream 467702 34017010 ~ 34029131 (-)
G698986 NA non-coding downstream 60786 33421436 ~ 33424015 (-)
G698742 NA non-coding downstream 209849 33274665 ~ 33274952 (-)
G698729 NA non-coding downstream 217652 33266871 ~ 33267149 (-)
G698663 NA non-coding downstream 269832 33214729 ~ 33214969 (-)
G699093 NA non-coding upstream 37111 33586419 ~ 33586673 (-)
G699309 NA non-coding upstream 72370 33621678 ~ 33622113 (-)
G699311 NA non-coding upstream 76931 33626239 ~ 33626569 (-)
G699323 NA non-coding upstream 98128 33647436 ~ 33647645 (-)
G699324 NA non-coding upstream 98400 33647708 ~ 33647983 (-)
G698356 NA other downstream 494740 32989245 ~ 32990061 (-)
G697774 LOC106571626 other downstream 985391 32498799 ~ 32499410 (-)
LOC110529804 ypel5 other downstream 1267252 32214451 ~ 32217572 (-)
LOC110529793 LOC106571728 other downstream 1805066 31657632 ~ 31703525 (-)
G696499 NA other downstream 2006774 31477354 ~ 31478027 (-)
G699468 NA other upstream 393714 33943022 ~ 33952356 (-)
G701454 NA other upstream 2033690 35582998 ~ 35589877 (-)
LOC110529865 LOC106571568 other upstream 2092047 35633473 ~ 35705333 (-)
G701618 LOC106571560 other upstream 2351315 35900623 ~ 35918175 (-)

Expression


Co-expression Network