LOC110529832 (fbxo16)


Basic Information

Item Value
gene id LOC110529832
gene name fbxo16
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33685369 ~ 33689052 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612410.2
CAACGttgggtggagaaggagagggggaggtgcaCCCCACAGTACACCCATTACTATGGAAACAGGTAAACTGTACGAGCGCTTGAAGAACAAAGTGACATGTACTGGTAATCCTATGGACAAGATACGAATACATAACACTGAGGATTCGTGATTGGGATGATAACTATGCTTGCTTGCTTCATGCATCATAGGCCGGAGGAGATTGATGATCTGACTTGTTGCGGATTTGTAGCAGCTGAAAGATGTCCTTTGCACCGAGGACCTCACTAACCTCAGCCAAGATGACCTCACTAACCTCGGCCAAGATGACCTCACTAACCTCGGCCAAGATGCAGACCAAAATGAGTGCCTGGACACCTCTTAACCACCAGCTGTCTAATAACAATGTGTTTGAAGAGCGAAGAAACCTGCTGGGAAAATGGTTTGACAAGTGGAGCGACGGCCAGAGGAAGGCGGTTCTACAGGACTTTTTCTCGCGGTGTTCAGTGGGCCAGCTGCGTTTCCTCCGTCAGAACCTGACCAAGAGGGTTCCAGAAGAGAACCTAGACTTCACCTCTGTCCTGCccagagttctctctctctatgtcttctCTTTCCTCGACCCCAGGAGTCTTTGCAGGTGTGCACAGGTGAGTTGGCACTGGAAGGGTATAGTTGAGTTGGACCAGCAATGGATGCCCAAGTGTCTTAAACTGGGCTGGTGCATCAACTTTGCTCCCACACCATTTGAACATGGGGTCTGGAAGAGACACTACATAGAGACCGTACTGGAGCTCCACATCGGCAAACCTAAGACTCTATCACAGCAGGAGTTCATTGTCCCCGAGGTGACGTCCATAAACAGTGTGACGTTTGACCAATCAGAGAGCTTCCTCAGAGAGGTGCGATCCGCACACCCCGTCCAGCAAGAGAGGAGCGGTGGCGGCACCACGAGGTGGTCAGGAGGGTCCCAGCTGAAGGGGCTACCCCCGTGGAGGGGTGCAGACAGACACCCCACTGACACCGTGCGATTCAATTATCTGGAAAATCTGGACCCCATAGAGCACGCCCACCAAGCAAAAGTGAAGAGCAGAGGGGTCTTCAACACATACAATGAAAATAAGAAAGAGCTGTCTGCATTCAATTATAAACTGCGCAAGGCAAAGTCATTGATGTTCCTGTCCTTGGACCTGACTCCAGGTTCGGGTTCTGGAGCAGGACAGCAGAAGCAGAACCGGTTCCGCCCCCAATGGGCCACACAGAGCCTAGAGTACCCTGTCACCAAGGCAACAGCCAAGAGCCTGTCGCGGTCGAGCCAATGGAACGCTGGGATACGACCTAGTCCTGTGAGGCCAGCGGTGCCCAGGCTCAGTCAGGAAGGACTGAGGGCATCAATGAGGACAAACAGGAGTACTCCTAGTTAGAAACAtctttccctcccttccttcctccttttCTTCTTTCCTACTTTCCTTAAATCTGTCCATCGCACAGGACACACAGGACCACGCCTAGTAAGACAATAGATGACCAATCCTTTCAATGTACATTCTTGGTTGAACTAACAGAATGAGCTCTCCATCAAAAAGGAAACTTGTGTCCAAGGAAACACGTGACATGACATTCTTACTCAATTAATGCTTTCTTTCACTGCGTGAATGTTCTGTATCATGTATGATGTATAATTGACTTACATGGTTTGAGGTTTCAGCAGCACCACTGTTTGAGGGACGGAGGATACCAGCGACCAGTGGTGGATCAGACGAGTGAACTATATCGCCACCCTGTGGAGCACGTTAGTACTGTAGCACAGACGTTCTGCATGCCTACATGTTATACAGTCCGTATTGTCCCGCAGCAGCGGTGCTCAACTGGAGTctgaccaatgtt

Function

symbol description
fbxo16 Is expressed in Kupffer's vesicle; hypothalamus; neural tube; and spinal cord. Orthologous to human FBXO16 (F-box protein 16).

NR:

description
F-box only protein 16

GO: NA

KEGG:

id description
K10299 FBXO16; F-box protein 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612410.2 True 1872 mRNA 0.50 8 33685369 33689052

Neighbor

gene id symbol gene type direction distance location
LOC110529828 LOC106571602 coding downstream 136061 33484801 ~ 33549308 (-)
LOC110529827 LOC106606921 coding downstream 226897 33454287 ~ 33458472 (-)
ints9 ints9 coding downstream 249492 33426517 ~ 33435877 (-)
LOC110529824 NA coding downstream 272360 33409803 ~ 33413009 (-)
LOC118965663 NA coding downstream 274217 33410866 ~ 33411152 (-)
cdc42bpab LOC106571585 coding upstream 30322 33719374 ~ 33822238 (-)
LOC110529836 LOC106571586 coding upstream 142620 33831672 ~ 33841602 (-)
LOC110529840 LOC106571603 coding upstream 286436 33975488 ~ 34009377 (-)
ankef1a LOC106571587 coding upstream 327958 34017010 ~ 34029131 (-)
LOC110529846 LOC106571592 coding upstream 447506 34136558 ~ 34157637 (-)
G699319 NA non-coding downstream 1399 33680741 ~ 33683970 (-)
G699326 NA non-coding downstream 35540 33649603 ~ 33649829 (-)
G699324 NA non-coding downstream 37386 33647708 ~ 33647983 (-)
G699323 NA non-coding downstream 37724 33647436 ~ 33647645 (-)
G699311 NA non-coding downstream 58800 33626239 ~ 33626569 (-)
G699381 NA non-coding upstream 68722 33757774 ~ 33788417 (-)
G699427 NA non-coding upstream 135021 33824073 ~ 33824422 (-)
G699429 NA non-coding upstream 137367 33826419 ~ 33826658 (-)
G699430 LOC106571598 non-coding upstream 138708 33827760 ~ 33827995 (-)
G699431 LOC106571598 non-coding upstream 139072 33828124 ~ 33828678 (-)
G698356 NA other downstream 695308 32989245 ~ 32990061 (-)
G697774 LOC106571626 other downstream 1185959 32498799 ~ 32499410 (-)
LOC110529804 ypel5 other downstream 1467820 32214451 ~ 32217572 (-)
LOC110529793 LOC106571728 other downstream 2005634 31657632 ~ 31703525 (-)
G696499 NA other downstream 2207342 31477354 ~ 31478027 (-)
G699468 NA other upstream 253970 33943022 ~ 33952356 (-)
G701454 NA other upstream 1893946 35582998 ~ 35589877 (-)
LOC110529865 LOC106571568 other upstream 1952303 35633473 ~ 35705333 (-)
G701618 LOC106571560 other upstream 2211571 35900623 ~ 35918175 (-)

Expression


Co-expression Network