LOC110529836 (LOC106571586)


Basic Information

Item Value
gene id LOC110529836
gene name LOC106571586
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33831672 ~ 33841602 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612425.2
TTGCTCGCTTTGGCGCCCACAACCCCTTCTGCCAGTGAAAAGGACTATTAACGCTACTGCCATTTGGCGCAGTTAAAAATACGTGAACTTGCATAGCGTCCTTTACAAAATTTCCCGTCTTTGTTGTAATTTTACTTTATTTTAACAGCGTGGTTCAGTTTAGtgttttatacatttttcaaaatgAGTTCAATTAACGTAAAAAAACTGAAAGTAAACGAGTTGAAGGACGAGCTGAAAAAGCGTCAGCTGTCGGACAAGGGGTTGAAGGCCGAGTTGATGGACCGTTTGCAGGCCGCGCTTGACGAAGAGGCCCTGGCTGGAGATTCTCCCCTTGGGCTGGAGGCCGCGGAGGGAGGCTTTCCCGAGGGAGACGACGACGCCGCCGCCGCTGCTGATGACCAAGAGGACATGGGGGAAGATGAAGAAGACGAGGGCCCCGTCGTTGAAAGCATGGATGCCAACGAGGAGGAAGAGAATGGAAACGGAGAGGGAGACGCCGCTGTCGTGAACCAATGCGAGGAGGAAGAGAACGCGGCCCAGGAGGACGACGAAATGGGTGAGGTAGAAGAGGAAGAAATGGATCCAATGCTGAAGGAAGGTGTGGACGACATGGAGAAAATTACATTGGACGCAGAAGATGGTGAGCCTGGAGACCATCCAGCAGAGGGGGATGCGGACAAAGACACGAATGCTGATCAGAAGAATAAGAAGGGTGTTAAGAGACGCCGGGAGGAACATGGAAGGGGCTACTTTGAATTTATTGAAGAGAACAAATACAGCTGGCCTAGTCTCAAGTCTCCACTGCCACCcctggaggaggaagatgaggagttTGATGATACAACAGTCTGCCTGGACAACTATAACTGCGACCTGCACTTCAAGGTGTCCCGGGACCGCTACAGCGCCTCCTCTCTCACCATGGAGAGCTTTGCCTACCTGTGGTCCGGGGGCAGAGCCTCATACGGGCTGTCCCAGGGCAAGGCCTGCTACGAGATGAAGATAACTGAGAAAATCCCAGTGAAACACATATCCAGTAAGAACATGGACATCCATGAGGTCCAGGTTGGATGGTCCCTAGCTACTGGCAGTCTGCTCCTTGGTGAGGAGGAGCATTCCTATGCCTACTCTGGCAAAGGCAAGAAAACCACCAATTGCGTGACTGAAGATTTCGGGGAGACTTATGATGAGAATGACGTCATCTGCTGCCTCATTAACTTTGAAGGTGAGGAGGTGGAGATGTCCTTTTCTAAGAACGGTAATGAGCCAGTGGTGGCCTTCCAGGCCAGTAAGGAGTCCCTAGTAGGAAAAGCGCTCTTCCCCCACGTCATCTGCCACAATTGTGCAGTGGAGTTTAACTTTGGCCAGATGGACACGCCCTACTTCCCCCAGCCAGAGGGCTACACCTTCCTGCAGCAGGTCACCATGGAGGACCGTGTCCGCGGACCCAAGGCACCTGACACCAAGAAGGACTGCGAGGTGATTGCCATGGTGGGCCTGCCTGGCTCAGGAAAGAGCACCTGGGTCAACAAGCACATCCAGGAGAACCCCGGGAAATATTACATCCTGGGCAGCGACACCATCGTGGAGAAGATGATGATTGGCAGTTTGAAGCGTCAGGCGAAGGACACAACAAAGCTCACGGCCATTTCCCAGCGTGCACCTCTCTTCCTGGGCAAGTTCATTGAGATCGCTGCTCGCAAAAAGAGGAACTATATCCTGGACCACACCAACCTGTCTGCCCCGGGCCAAAAGAGGAAGATGTGTCTATTTGCTGGGTACCAGCGGAAGGCTGTGGTGGTCTGTCCCTCAGACGACGACTACAAGGAGAGAGCCCAGAAGAAGGCCGAGAGCGACGGGAAAGACGTGCCCGAGCACGCTCTCCTCAAAATGAAAGGATTCTTCACCCTGCCAGAGGAAGGTGAGAGCTTCGCTGTGGTGAGCTACGCTGAGCTGCAGAAGGAGGATGCTGCCAAGCTGGTGGAGCAGTACAAGGAGGAGAGCAAGGCGGCCCTGCCGGCTGAGAAGAAGCCCAACCAGGGGTCTTTGACCCccaagagaggaggagggagtgtcCGGGGGGGAGGCAGAGGCAAGAACCAGTTCAACCGTGGAGGTGGACCTGGCCAGAGAGGAGGTGGACGAGGTGGCTTCCAGCAGAGAGGCAACTTCCGAGGAGCTCCAGGCCCACGTGGTGGGTTCACTCGCCCCCCTAGAGGGTTCATGCCCCCTCCAGCCTTCAGAGGTGGATTCGCCAACCGGGGCAACTTCAACAGGGGCGGCGCCCTCATGGCTCCCCAAGGAGGGTCCCCAAGAGGGGGACCGATGAGGGGCCACAGGGGTGGAGCCATGAACAGAGGTGGTCCTCCAATGAGCCGAGGGGGCGGCGGTCACATGAGCCGAGGGGGCGGCGGTCACATGAGCCGAGGGGGCGGCGGTCACATGAGCCGAGGGGGCGGCGGTCACAGGGGCAACTTCAACCAGGGGTTCCAGCCCAGAGCAGGCAACAGCCGTGGGAATTTTGGCAACAAGAATGGCAGCGGTGGGTTTGGGGGCGGCAGGAATGGTGGAGGACGTGGTGGCGGATTTGGAGACAACAGGACTGGTGGAGGATTTGGCATGGACAAGGCTCAGGCCTTCAACCAGAGCTGGCAGCAAGGGTTTTggaaccagaagccatggagcCAGCAGTATCAGCCAGGATACTATTAAAGACTTTCTGATCAAAAGGACTGGTGGCCATTAATGGTAACCAACCACTAGCCACGGACCCCCTGCCCCACCCCTCCCGTTTTTTCTAGAACCCACTTTTTAAATTGAAAACAAAAAACGCAAGCCGATGGAGCAACATTCCACATCCGAGGAGAGGAGTCTCTGAAGCTTTATGGGTTTTTCCATTTGATTTTGTACATTTTATGATCCCCACATTTTAAAGAAATCACatgcttttaaaaaaaatcccATGTTTGAGAAACATACCACATCACGAACCGCAACATTTTCCCTCTGCTTCAGTGACATTTTCAGGGTTGTGCATTTTCTgtgtaatgtttttattttttatttttacaaaatgtAAATATTGTCTTGCGTAGTTATGTTTGTATAAGAAGTGAGAACACTTAGTTCCTTTCGGTTATTATCTTATGAGAGGCATGGTAGCTATAGTATTGTTAGTGATTTGTATATGTAGTCCATAAGCAACAAACAGTAATTTGTTATTTTTAATTAAAACATCAAGCATGTAATCTAAACTCCGTAGATTTACAATAAACAACCTATTTGCTTTTTGCAGAAGTC

Function

NR:

description
heterogeneous nuclear ribonucleoprotein U-like

GO: NA

KEGG:

id description
K12888 HNRNPU; heterogeneous nuclear ribonucleoprotein U

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612425.2 True 3303 mRNA 0.52 14 33831672 33841602

Neighbor

gene id symbol gene type direction distance location
cdc42bpab LOC106571585 coding downstream 9434 33719374 ~ 33822238 (-)
LOC110529832 fbxo16 coding downstream 142620 33685369 ~ 33689052 (-)
LOC110529828 LOC106571602 coding downstream 282364 33484801 ~ 33549308 (-)
LOC110529827 LOC106606921 coding downstream 373200 33454287 ~ 33458472 (-)
ints9 ints9 coding downstream 395795 33426517 ~ 33435877 (-)
LOC110529840 LOC106571603 coding upstream 133886 33975488 ~ 34009377 (-)
ankef1a LOC106571587 coding upstream 175408 34017010 ~ 34029131 (-)
LOC110529846 LOC106571592 coding upstream 294956 34136558 ~ 34157637 (-)
LOC110529843 LOC105030678 coding upstream 413913 34255515 ~ 34257262 (-)
LOC110529848 LOC106571583 coding upstream 703554 34545156 ~ 34550128 (-)
G699431 LOC106571598 non-coding downstream 2994 33828124 ~ 33828678 (-)
G699430 LOC106571598 non-coding downstream 3677 33827760 ~ 33827995 (-)
G699429 NA non-coding downstream 5014 33826419 ~ 33826658 (-)
G699427 NA non-coding downstream 7250 33824073 ~ 33824422 (-)
G699381 NA non-coding downstream 43255 33757774 ~ 33788417 (-)
G699436 NA non-coding upstream 9033 33850635 ~ 33850889 (-)
G699443 LOC106571584 non-coding upstream 19663 33861265 ~ 33861485 (-)
G699445 LOC106571584 non-coding upstream 26141 33867743 ~ 33868222 (-)
G699450 NA non-coding upstream 30053 33871655 ~ 33871859 (-)
G699451 NA non-coding upstream 30300 33871902 ~ 33872117 (-)
G698356 NA other downstream 841611 32989245 ~ 32990061 (-)
G697774 LOC106571626 other downstream 1332262 32498799 ~ 32499410 (-)
LOC110529804 ypel5 other downstream 1614123 32214451 ~ 32217572 (-)
LOC110529793 LOC106571728 other downstream 2151937 31657632 ~ 31703525 (-)
G696499 NA other downstream 2353645 31477354 ~ 31478027 (-)
G699468 NA other upstream 101420 33943022 ~ 33952356 (-)
G701454 NA other upstream 1741396 35582998 ~ 35589877 (-)
LOC110529865 LOC106571568 other upstream 1799753 35633473 ~ 35705333 (-)
G701618 LOC106571560 other upstream 2059021 35900623 ~ 35918175 (-)

Expression


Co-expression Network