LOC110529839 (LOC106571597)


Basic Information

Item Value
gene id LOC110529839
gene name LOC106571597
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33889753 ~ 33908455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612429.2
TGAGACATCAACCAGCTGCCAGAAGATGGCCCCCTTGCCTCTGTTGTACAATAAAATGATATATTTCGCAATGAGTTTCGGACGAAGGCAGAAAATGCCCGGATTAGATCATAAACAACCATGGATCCGCAGAGATGGTGACACTCAAGGTTGTATATCAAGTGCATTTTAGAACATCGTGTTCAGAATAAAAGGGATATGGATTGAGCTGGATGACCGTTCAGCTGATTGTCAACAACGAACCTTTCTTTGCTTTACAGCGGGACAGTATCTTGCATGTGGTattgaagaggagaggaaaaagcTTCGTGGTGACCTGCTAGAGGGATTTCAAGGACCAGGGAGAGCCCCAAACAACTCCAAACAAGGAGGCCAGAACACAGGGAGACCATAAAAACAAGGAGATTGAGAGTAGCCTAAACCAAATCCATGTTTCTAGACAGAATCCAGTCCTAGTAGGTGGCAGCCAGCCACCTCCCTCCTGTGGGCCCGACCCACCTCTTGGGAACCAGTGAGTTGGTGGAGAACAACATTGTGAGGGAGAGGATGGGCAACAAGAGCACCAGCCCCCCCAGAGACCCAGACACTGAGAAGACTCAGAGAGAGGAGGCAAACAACACAGAGACTGCCTCAGGAAGTGCCCCCCCAGGCCCCAGTCCTGACCTGCTAGCCTCACTACAGTCTTTGGGAGAACACAGTgaccacacactgctgccacagaCTCTACACCAGATAGCGGAGGCCTACTCCCTGGAAGAGGAATATCAGTGGGCAGTGCAGTTCCTGCAGCTGGAGAGGCTATATCATGAGCGCCTCCTGTCTAACCTCACTGCCCTGCAGGAAGACTGGGAGAGCCAGTGTAGAAAGTGTAACAGAGCAGCGGAGAGCACCTCACCAGGTGAAACCAACAGCATTGGACAGGAACACATAGAAATACTGAGCCAGATCTGCAGGACGCACCAGAGGCCAATGCTTAGTGCGGGAAAGaGCATGGCAGACACAGCGTTGAAAGACAACCACAACACCAAGGAGCAAtgtgagaggaatgagagagaatcACCATCCCACCATGGAAAAGTCAGAGGCAGCAACCCTGTAAGACAGGGTGAGGAGGATTTTGAGCAGACCACGTCAACAGGAGCTGACTCTGCCatggttgaggaggaggagggaggagtggtggagggaggagtggacgAGATGGAGGCGGAAGGGCAGGAGGTGGATGAAGAGGAGGTGTTTGAGGAGAGTCCAGAAGAGGAGGTGCAGGTGGTGGAGTGGCCAGCGGGGGTTCCCCAAGCCTCAGCCAAAGACCTGGTCAAACTCTCTCATGTGGAGGAGAGCTCCTCACCAGATGGCCTGGTGTCCATTCTGAAAAGGAGGAGGGCGTCGTTAGATGGCCTGCCCCCAGAGGGTCCCGATGCAGCCAAACAGAACTCCAAACGCAAGGTGCGCTTCAGCGAGCCAGAGGATGGCATGGAACCAGaggaggtgggtggagactCTTGTTTGatcctgctgttgttgtgcttaGTAACCGTGGTGATCAGTCTGGGCGGGACTGCTCTGTACTGCACCCTAGTGGACACCTACAGTAGTATCTGCACCGACTTCTCTCACAACGTGGACTTTTACGTGGTCCAAGTACGACACTTCCTGGACGGGCTCAGACACTGGCTGTCCATACGCTCATAGTCAGCACAGTCTATCGGAGCAGTAAGGACATACAGTCAGTCGCCTGCTGCAGCAGTATATGGACTTATACAGAAGCCCACCTACTGCTACAGTCTAGGGACTCTTATGAAACTCTAGGAGGAAGACAAGCAAAAATATACTGTAAGACTGGTAACACTATTGGTTGGAGAGAATGCTTTAGGTGAAGTCAGACACTGGCTCCCCAAACTGTCCAAGCCAGGGAATAGATTCACTATACTGTATGAACTGCTCTGAGACTGAGACAAGATGGAGCACCTTACCCTAGTCCCAGTATGAATTAGAGAAGGTCATTGAAGTTCTGGGATAGGGTCTGAAATAGAGTGAACGGGCTTGTGAGCATTGATGTAACAGGAGGCACAGGTGCAGACATTTTGAACTACTGACATTTCATATGCAGACCAAACTGTTTCCGGAACACTGCCTCCTCTTGTTTTTGACCAGAAGTTTTTAACCTCGAGATGGACACAGCACAAAAGAGCTCCCAAAAACACGCAAAGGAACAAAACACAGCATTGTAAAGTATATTCTAGttggattttttattttaaaaaaatataggtTTATCTGAATTTGTAAAGATGTTTATCTGAAAAACAGATACAATTCAGATAAACCGTAAAGATGTTTATCTGAATTTGAAAGCCTCGTGGTAAAATTTGGGGTACAGTATGCcaataaaaaaacagacattttgGGGGATTGAaaggacacttttttttttattatcaacaTTTCTGTGTTTTTCATGACAAGTCTTCTCGACTCCTTGACTTGTCAAATGTAGCCTACACGTTGTACATTTTACAGCTGTTTTTGTACATGGAGACATGGGTTTAGAATTGCTCTTACATTCCTCTGAAGGTACGCAAGGTTGTTGACCACTGCAAATGAAAGTCATTTGGGAAGAATGGCTCTCTGGAATTGGCACATTGTTAAGTCATTTGTTGAAAACAGAGTAATATCAATACAAATATGCATGaaagatactgtatgtatggcTCTTGGTATGACAATATGAACAAGGTTTAATGTTCATACAGCAATGCATTTAAATGTAGTCATGATATTCAGTACTTGTACTGATTACTCCAATATTTCAAGAACATATGTTAacttttttgtgctggtcaataTTGTTATGTATTGTAACCATACATTTGTCTTTTATTCTATGTGTCTATTTTAACGTATTGAATACAAATCCATTTCCTTGCTTTGGTGAATAAACTTTGTTTGCTTTTTATCTA
>XM_021612430.2
TGAGACATCAACCAGCTGCCAGAAGATGGCCCCCTTGCCTCTGTTGTACAATAAAATGATATATTTCGCAATGAGTTTCGGACGAAGGCAGAAAATGCCCGGATTAGATCATAAACAACCATGGATCCGCAGAGATGGTGACACTCAAGGTTGTATATCAAGTGCATTTTAGAACATCGTGTTCAGAATAAAAGGGATATGGATTGAGCTGGATGACCGTTCAGCTGATTGTCAACAACGAACCTTTCTTTGCTTTACAGCGGGACAGTATCTTGCATGTGGTattgaagaggagaggaaaaagcTTCGTGGTGACCTGCTAGAGGGATTTCAAGGACCAGGGAGAGCCCCAAACAACTCCAAACAAGGAGGCCAGAACACAGGGAGACCATAAAAACAAGGAGATTGAGACAGAATCCAGTCCTAGTAGGTGGCAGCCAGCCACCTCCCTCCTGTGGGCCCGACCCACCTCTTGGGAACCAGTGAGTTGGTGGAGAACAACATTGTGAGGGAGAGGATGGGCAACAAGAGCACCAGCCCCCCCAGAGACCCAGACACTGAGAAGACTCAGAGAGAGGAGGCAAACAACACAGAGACTGCCTCAGGAAGTGCCCCCCCAGGCCCCAGTCCTGACCTGCTAGCCTCACTACAGTCTTTGGGAGAACACAGTgaccacacactgctgccacagaCTCTACACCAGATAGCGGAGGCCTACTCCCTGGAAGAGGAATATCAGTGGGCAGTGCAGTTCCTGCAGCTGGAGAGGCTATATCATGAGCGCCTCCTGTCTAACCTCACTGCCCTGCAGGAAGACTGGGAGAGCCAGTGTAGAAAGTGTAACAGAGCAGCGGAGAGCACCTCACCAGGTGAAACCAACAGCATTGGACAGGAACACATAGAAATACTGAGCCAGATCTGCAGGACGCACCAGAGGCCAATGCTTAGTGCGGGAAAGaGCATGGCAGACACAGCGTTGAAAGACAACCACAACACCAAGGAGCAAtgtgagaggaatgagagagaatcACCATCCCACCATGGAAAAGTCAGAGGCAGCAACCCTGTAAGACAGGGTGAGGAGGATTTTGAGCAGACCACGTCAACAGGAGCTGACTCTGCCatggttgaggaggaggagggaggagtggtggagggaggagtggacgAGATGGAGGCGGAAGGGCAGGAGGTGGATGAAGAGGAGGTGTTTGAGGAGAGTCCAGAAGAGGAGGTGCAGGTGGTGGAGTGGCCAGCGGGGGTTCCCCAAGCCTCAGCCAAAGACCTGGTCAAACTCTCTCATGTGGAGGAGAGCTCCTCACCAGATGGCCTGGTGTCCATTCTGAAAAGGAGGAGGGCGTCGTTAGATGGCCTGCCCCCAGAGGGTCCCGATGCAGCCAAACAGAACTCCAAACGCAAGGTGCGCTTCAGCGAGCCAGAGGATGGCATGGAACCAGaggaggtgggtggagactCTTGTTTGatcctgctgttgttgtgcttaGTAACCGTGGTGATCAGTCTGGGCGGGACTGCTCTGTACTGCACCCTAGTGGACACCTACAGTAGTATCTGCACCGACTTCTCTCACAACGTGGACTTTTACGTGGTCCAAGTACGACACTTCCTGGACGGGCTCAGACACTGGCTGTCCATACGCTCATAGTCAGCACAGTCTATCGGAGCAGTAAGGACATACAGTCAGTCGCCTGCTGCAGCAGTATATGGACTTATACAGAAGCCCACCTACTGCTACAGTCTAGGGACTCTTATGAAACTCTAGGAGGAAGACAAGCAAAAATATACTGTAAGACTGGTAACACTATTGGTTGGAGAGAATGCTTTAGGTGAAGTCAGACACTGGCTCCCCAAACTGTCCAAGCCAGGGAATAGATTCACTATACTGTATGAACTGCTCTGAGACTGAGACAAGATGGAGCACCTTACCCTAGTCCCAGTATGAATTAGAGAAGGTCATTGAAGTTCTGGGATAGGGTCTGAAATAGAGTGAACGGGCTTGTGAGCATTGATGTAACAGGAGGCACAGGTGCAGACATTTTGAACTACTGACATTTCATATGCAGACCAAACTGTTTCCGGAACACTGCCTCCTCTTGTTTTTGACCAGAAGTTTTTAACCTCGAGATGGACACAGCACAAAAGAGCTCCCAAAAACACGCAAAGGAACAAAACACAGCATTGTAAAGTATATTCTAGttggattttttattttaaaaaaatataggtTTATCTGAATTTGTAAAGATGTTTATCTGAAAAACAGATACAATTCAGATAAACCGTAAAGATGTTTATCTGAATTTGAAAGCCTCGTGGTAAAATTTGGGGTACAGTATGCcaataaaaaaacagacattttgGGGGATTGAaaggacacttttttttttattatcaacaTTTCTGTGTTTTTCATGACAAGTCTTCTCGACTCCTTGACTTGTCAAATGTAGCCTACACGTTGTACATTTTACAGCTGTTTTTGTACATGGAGACATGGGTTTAGAATTGCTCTTACATTCCTCTGAAGGTACGCAAGGTTGTTGACCACTGCAAATGAAAGTCATTTGGGAAGAATGGCTCTCTGGAATTGGCACATTGTTAAGTCATTTGTTGAAAACAGAGTAATATCAATACAAATATGCATGaaagatactgtatgtatggcTCTTGGTATGACAATATGAACAAGGTTTAATGTTCATACAGCAATGCATTTAAATGTAGTCATGATATTCAGTACTTGTACTGATTACTCCAATATTTCAAGAACATATGTTAacttttttgtgctggtcaataTTGTTATGTATTGTAACCATACATTTGTCTTTTATTCTATGTGTCTATTTTAACGTATTGAATACAAATCCATTTCCTTGCTTTGGTGAATAAACTTTGTTTGCTTTTTATCTA
>XM_021612431.2
TGAGACATCAACCAGCTGCCAGAAGATGGCCCCCTTGCCTCTGTTGTACAATAAAATGATATATTTCGCAATGAGTTTCGGACGAAGGCAGAAAATGCCCGGATTAGATCATAAACAACCATGGATCCGCAGAGATGGTGACACTCAAGGTTGTATATCAAGTGCATTTTAGAACATCGTGTTCAGAATAAAAGGGATATGGATTGAGCTGGATGACCGTTCAGCTGATTGTCAACAACGAACCTTTCTTTGCTTTACAGCGGGACAGTATCTTGCATGTGGTattgaagaggagaggaaaaagcTTCGTGGTGACCTGCTAGAGGGATTTCAAGGACCAGGGAGAGCCCCAAACAACTCCAAACAAGGAGGCCAGAACACAGGGAGACCATAAAAACAAGGAGATTGAGAATCCAGTCCTAGTAGGTGGCAGCCAGCCACCTCCCTCCTGTGGGCCCGACCCACCTCTTGGGAACCAGTGAGTTGGTGGAGAACAACATTGTGAGGGAGAGGATGGGCAACAAGAGCACCAGCCCCCCCAGAGACCCAGACACTGAGAAGACTCAGAGAGAGGAGGCAAACAACACAGAGACTGCCTCAGGAAGTGCCCCCCCAGGCCCCAGTCCTGACCTGCTAGCCTCACTACAGTCTTTGGGAGAACACAGTgaccacacactgctgccacagaCTCTACACCAGATAGCGGAGGCCTACTCCCTGGAAGAGGAATATCAGTGGGCAGTGCAGTTCCTGCAGCTGGAGAGGCTATATCATGAGCGCCTCCTGTCTAACCTCACTGCCCTGCAGGAAGACTGGGAGAGCCAGTGTAGAAAGTGTAACAGAGCAGCGGAGAGCACCTCACCAGGTGAAACCAACAGCATTGGACAGGAACACATAGAAATACTGAGCCAGATCTGCAGGACGCACCAGAGGCCAATGCTTAGTGCGGGAAAGaGCATGGCAGACACAGCGTTGAAAGACAACCACAACACCAAGGAGCAAtgtgagaggaatgagagagaatcACCATCCCACCATGGAAAAGTCAGAGGCAGCAACCCTGTAAGACAGGGTGAGGAGGATTTTGAGCAGACCACGTCAACAGGAGCTGACTCTGCCatggttgaggaggaggagggaggagtggtggagggaggagtggacgAGATGGAGGCGGAAGGGCAGGAGGTGGATGAAGAGGAGGTGTTTGAGGAGAGTCCAGAAGAGGAGGTGCAGGTGGTGGAGTGGCCAGCGGGGGTTCCCCAAGCCTCAGCCAAAGACCTGGTCAAACTCTCTCATGTGGAGGAGAGCTCCTCACCAGATGGCCTGGTGTCCATTCTGAAAAGGAGGAGGGCGTCGTTAGATGGCCTGCCCCCAGAGGGTCCCGATGCAGCCAAACAGAACTCCAAACGCAAGGTGCGCTTCAGCGAGCCAGAGGATGGCATGGAACCAGaggaggtgggtggagactCTTGTTTGatcctgctgttgttgtgcttaGTAACCGTGGTGATCAGTCTGGGCGGGACTGCTCTGTACTGCACCCTAGTGGACACCTACAGTAGTATCTGCACCGACTTCTCTCACAACGTGGACTTTTACGTGGTCCAAGTACGACACTTCCTGGACGGGCTCAGACACTGGCTGTCCATACGCTCATAGTCAGCACAGTCTATCGGAGCAGTAAGGACATACAGTCAGTCGCCTGCTGCAGCAGTATATGGACTTATACAGAAGCCCACCTACTGCTACAGTCTAGGGACTCTTATGAAACTCTAGGAGGAAGACAAGCAAAAATATACTGTAAGACTGGTAACACTATTGGTTGGAGAGAATGCTTTAGGTGAAGTCAGACACTGGCTCCCCAAACTGTCCAAGCCAGGGAATAGATTCACTATACTGTATGAACTGCTCTGAGACTGAGACAAGATGGAGCACCTTACCCTAGTCCCAGTATGAATTAGAGAAGGTCATTGAAGTTCTGGGATAGGGTCTGAAATAGAGTGAACGGGCTTGTGAGCATTGATGTAACAGGAGGCACAGGTGCAGACATTTTGAACTACTGACATTTCATATGCAGACCAAACTGTTTCCGGAACACTGCCTCCTCTTGTTTTTGACCAGAAGTTTTTAACCTCGAGATGGACACAGCACAAAAGAGCTCCCAAAAACACGCAAAGGAACAAAACACAGCATTGTAAAGTATATTCTAGttggattttttattttaaaaaaatataggtTTATCTGAATTTGTAAAGATGTTTATCTGAAAAACAGATACAATTCAGATAAACCGTAAAGATGTTTATCTGAATTTGAAAGCCTCGTGGTAAAATTTGGGGTACAGTATGCcaataaaaaaacagacattttgGGGGATTGAaaggacacttttttttttattatcaacaTTTCTGTGTTTTTCATGACAAGTCTTCTCGACTCCTTGACTTGTCAAATGTAGCCTACACGTTGTACATTTTACAGCTGTTTTTGTACATGGAGACATGGGTTTAGAATTGCTCTTACATTCCTCTGAAGGTACGCAAGGTTGTTGACCACTGCAAATGAAAGTCATTTGGGAAGAATGGCTCTCTGGAATTGGCACATTGTTAAGTCATTTGTTGAAAACAGAGTAATATCAATACAAATATGCATGaaagatactgtatgtatggcTCTTGGTATGACAATATGAACAAGGTTTAATGTTCATACAGCAATGCATTTAAATGTAGTCATGATATTCAGTACTTGTACTGATTACTCCAATATTTCAAGAACATATGTTAacttttttgtgctggtcaataTTGTTATGTATTGTAACCATACATTTGTCTTTTATTCTATGTGTCTATTTTAACGTATTGAATACAAATCCATTTCCTTGCTTTGGTGAATAAACTTTGTTTGCTTTTTATCTA

Function

NR:

description
consortin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612429.2 False 2963 mRNA 0.46 12 33889753 33908455
XM_021612430.2 False 2934 mRNA 0.46 12 33889753 33908455
XM_021612431.2 True 2930 mRNA 0.46 12 33889753 33908455
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Neighbor

gene id symbol gene type direction distance location
LOC110529837 LOC106571584 coding upstream 2769 33850636 ~ 33886984 (+)
LOC110529835 LOC106571598 coding upstream 60979 33823071 ~ 33828774 (+)
fzd3a fzd3 coding upstream 170118 33689214 ~ 33719635 (+)
LOC110529830 LOC106571599 coding upstream 208916 33656633 ~ 33680837 (+)
sf3b6 sf3b6 coding upstream 405349 33480209 ~ 33484404 (+)
LOC118965510 LOC106571597 coding downstream 1298 33909753 ~ 33941058 (+)
LOC118965511 LOC106571597 coding downstream 11796 33920251 ~ 33930473 (+)
LOC110529838 LOC106571596 coding downstream 28071 33936526 ~ 33955195 (+)
LOC110529845 LOC106571588 coding downstream 250513 34158968 ~ 34166714 (+)
LOC110529844 hs90a coding downstream 258615 34167070 ~ 34177609 (+)
G699251 NA non-coding upstream 2240 33887159 ~ 33887513 (+)
G699250 NA non-coding upstream 7583 33881872 ~ 33882170 (+)
G699240 NA non-coding upstream 26988 33862523 ~ 33862765 (+)
G699239 NA non-coding upstream 28878 33860648 ~ 33860875 (+)
G699189 LOC106571586 non-coding upstream 53277 33834372 ~ 33836476 (+)
G699270 NA non-coding downstream 61037 33969492 ~ 33969708 (+)
G699273 NA non-coding downstream 63463 33971918 ~ 33972126 (+)
G694036 NA other upstream 4097006 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 4951480 28930668 ~ 28939888 (+)
G693207 NA other upstream 5184001 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 5331380 28495104 ~ 28605625 (+)
G692424 NA other upstream 5819525 28069900 ~ 28070228 (+)
G699605 NA other downstream 219138 34127593 ~ 34128301 (+)
LOC110529856 LOC106571576 other downstream 1546393 35454437 ~ 35462086 (+)
G700685 NA other downstream 1704709 35613164 ~ 35614666 (+)
G700864 NA other downstream 1995594 35904049 ~ 35904698 (+)
G702415 NA other downstream 2791983 36700438 ~ 36700739 (+)

Expression

LOC110529839(LOC106571597) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110529839(LOC106571597) Expression in each Bioproject

Bar chart with 21 bars.
LOC110529839(LOC106571597) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network