LOC118965510 (LOC106571597)


Basic Information

Item Value
gene id LOC118965510
gene name LOC106571597
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33909753 ~ 33941058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985367.1
ATTATTCTAGAATTGTGTATTTATACTACGTACTATCAAGCGTTGGGCTAGAGCTCAGTCGACTCATGCAATATTGTTGCGTAGTTTATGTTTTAAGGCAAAGGTCGCGTTATTTCGGATATCCATATTATGCCTACCCATGTGGTTTTACATATCTCAGCTGTAGTATTTCAATCTCGATATATATTCTTTTTTTTCCAAACATTGCAGTAATACCGAATGCATTGGTTAACATTGTAGTCAGTTGATTCATACGAAACACTACGAGAACAAATCTTTTTGCGCGTCACTGCGTAAACTAGGCTACAGTAAACGGACGTTTTAGTGCGCAATGGCGACTGTAACCTCTACCAGACCTTATCATATTATAATATTCGGAGCCTCCGGTTTTACCGGGCAGTTTGTGGTGGAAGAGGTAGCCCGGAGCGCCTTCGAAGGACCCAGCGGGTCTCTGAAATGGGCCTTGGCCGGGCGTAGCAGACAGCGTCTGGAGGGAGTTCTGAACCAAGCCGCCGAGACCCTCCAGCTCCTCACCAGATGGCCTGGTGTCCATTCTGAAAAGGAGGAGGGCGTCGTTAGATGGCCTGCCCCCAGAGGGTCCCGATGCAGCCAAACAGAACTCCAAACGCAAGGTGCGCTTCAGCGAGCCAGAGGATGGCATGGAACCAGaggaggtgggtggagactCTTGTTTGatcctgctgttgttgtgcttaGTAACCGTGGTGATCAGTCTGGGCGGGACTGCTCTGTACTGCACCCTAGTGGACACCTACAGTAGTATCTGCACCGACTTCTCTCACAACGTGGACTTTTACGTGGTCCAAGTACGACACTTCCTGGACGGGCTCAGACACTGGCTGTCCATACGCTCATAGTCAGCACAGTCTATCGGAGCAGTAAGGACATACAGTCAGTCGCCTGCTGCAGCAGTATATGGACTTATACAGAAGCCCACCTACTGCTACAGTCTAGGGACTCTTATGAAACCCTAGGAGGAAGACAAGCAAAAATATACTGTAAGACTGGTAACACTATTGGTTGGAGAGAATGCTTTAGGTGAAGTCAGACACTGGCTCCCCAAACTGTCCAAGCCAGGGAATAGATTCACTATACTGTATGAACTGCTCTGAGACTGAGACAAGATGGAGCACCTTACCCTAGTCCCAGTATGAATTAGAGAAGGTCATTGAAGTTCTGGGATAGGGTCTGAAATAGAGTGAACGGGCTTGTGAGCATTGATGTAACAGGAGGCACAGGTGCAGACATTTTGAACTACTGACATTTCATATGCAGACCAAACTGTTTCCGGAACACTGCCTCCTCTTGTTTTTGACCAGAAGTTTTTAACCTCGAGATGGACACAGCACAAAAGAGCTCCCAAAAACACGCAAAGGAACAAAACACAGCATTGTAAAGTATATTCTAGttggattttttattttaaaaaaatataggtTTATCTGAATTTGTAAAGATGTTTATCTGAAAAACAGATACAATTCAGATAAACCGTAAAGATGTTTATCTGAATTTGAAAGCCTTGTGGTAAAATTTGGGGTACAGTATgccaataaaaaaaacagacattttgGGGGATTGAaaggacacttttttttttattatcaacaTTTCTGTGTTTTTCATGACAAGTCTTCTCGACTCCTTGACTTGTCAAATGTAGCCTACACGTTGTACATTTTACAGCTGTTTTTGTACATGGAGACATGGGTTTAGAATTGCTCTTACATTCCTCTGAAGGTACGCAAGGTTGTTGACCACTGCAAATGAAAGTCATTTGGGAAGAATGGCTCTCTGGAATTGGCACATTGTTAAGTCATTTGTTGAAAACAGAGTAATATCAATACAAATATGCATGaaagatactgtatgtatggcTCTTGGTATGACAATATGAACAAGGTTTAATGTTCATACAGCAATGCATTTAAATGTAGTCATGATATTCAGTACTTGTACTGATTACTCCAATATTTCAAGAACATATGTTAacttttttgtgctggtcaataTTGTTATGTATTGTAACCATACATTTGTCTTTTATTCTATGTGTCTATTTTAACGTATTGAATACAAATCCATTTCCTTGCTTTGGTGAATAAACTTTGTTTGCTTTTTATCTA
>XM_036985366.1
tgatgaggaaaaaaagtgtatttaatcaattttagagtaaggctgtaatgtaacaatatgTGGATAAAgtcgtcaaggggtctgaatacttcccgaatgcactgtagctataTCCGAATTTGCACACATCAACTCTTTTAGACAATTCTTTTAAACAAGCAAAATAAATAAGTGTTCAATCATTACTGAGTGAATGAACAACAACAAAAGCTTCCTTTCATCACCAGACTGTCTATTTAAATAGTGTCGAGATAATGTGTTCATGACAGGGTTCGTAGCATAAGCGTTAATGTCAACACCATGGAATCTTGAAGGGTTACCACAGCAACAAAATCCAAATATTTTccataaaataaatgttaaaatgtTCTAACTCattttcattgggaaggcagatacAGCATTATTATCAAAAGCAAACCCTTTCGCTTGAGAACACAATCCTAGTAACTACCACCCTCTGGGGGTTTGATTAATCCCGGCTGGGTGTCAATGTAGGCGTGTTTTGCATTGGCTGAAAGTTGATTGCATTCGATTTGGAACCAGGCTGCCTGCTGGACGTGAGCCAAGTGCCATGTTCAAAGCAAACGGCGAAGTTGGCTCAAAAACAAAAGTGACCTATTTAAAGCATGTGTAGTAATTACTAGGATTCTGTGTTTTCCCAGGCAAAAGggattgctttaaaaaaaaaaaagattttatctgccttcccaatgaaaactagttcgaatttcaaacatttatttttatggaaaagagatgttGTATGTTTCTGGACaatgcaccatgctgccttgttaaCAAAATGACAGAGCAGGGCGATTTACTGCGTCGATTTGAGAAGGGCGCACCTCCCTCCGCGCTCTCCAGGGCGACAACCCTACTGGTGCCCCCGCCTcttcttctgtggggtttatcggcagatggcatccaacgttatgatgcattaccgccacctactgtactggagcggTCCCacctgtgtaccagagtcctagctTAAAAATGTACCAATAAAGGTATAAAAAGAGTTTCCTGcagatgcaggaatgcccacatgcaggaacAACCCAAATTGTGTGCCGCAATTGCACCCTGCTCCGTCTTGCTGCTACGGAGAAGAGTACAGTGGAGACTGGAGAGACCAACCCTCATCCTTCAGATGTGCTCCACCCCTATGAGCTCCTCACCAGATGGCCTGGTGTCCATTCTGAAAAGGAGGAGGGCGTCGTTAGATGGCCTGCCCCCAGAGGGTCCCGATGCAGCCAAACAGAACTCCAAACGCAAGGTGCGCTTCAGCGAGCCAGAGGATGGCATGGAACCAGaggaggtgggtggagactCTTGTTTGatcctgctgttgttgtgcttaGTAACCGTGGTGATCAGTCTGGGCGGGACTGCTCTGTACTGCACCCTAGTGGACACCTACAGTAGTATCTGCACCGACTTCTCTCACAACGTGGACTTTTACGTGGTCCAAGTACGACACTTCCTGGACGGGCTCAGACACTGGCTGTCCATACGCTCATAGTCAGCACAGTCTATCGGAGCAGTAAGGACATACAGTCAGTCGCCTGCTGCAGCAGTATATGGACTTATACAGAAGCCCACCTACTGCTACAGTCTAGGGACTCTTATGAAACCCTAGGAGGAAGACAAGCAAAAATATACTGTAAGACTGGTAACACTATTGGTTGGAGAGAATGCTTTAGGTGAAGTCAGACACTGGCTCCCCAAACTGTCCAAGCCAGGGAATAGATTCACTATACTGTATGAACTGCTCTGAGACTGAGACAAGATGGAGCACCTTACCCTAGTCCCAGTATGAATTAGAGAAGGTCATTGAAGTTCTGGGATAGGGTCTGAAATAGAGTGAACGGGCTTGTGAGCATTGATGTAACAGGAGGCACAGGTGCAGACATTTTGAACTACTGACATTTCATATGCAGACCAAACTGTTTCCGGAACACTGCCTCCTCTTGTTTTTGACCAGAAGTTTTTAACCTCGAGATGGACACAGCACAAAAGAGCTCCCAAAAACACGCAAAGGAACAAAACACAGCATTGTAAAGTATATTCTAGttggattttttattttaaaaaaatataggtTTATCTGAATTTGTAAAGATGTTTATCTGAAAAACAGATACAATTCAGATAAACCGTAAAGATGTTTATCTGAATTTGAAAGCCTTGTGGTAAAATTTGGGGTACAGTATgccaataaaaaaaacagacattttgGGGGATTGAaaggacacttttttttttattatcaacaTTTCTGTGTTTTTCATGACAAGTCTTCTCGACTCCTTGACTTGTCAAATGTAGCCTACACGTTGTACATTTTACAGCTGTTTTTGTACATGGAGACATGGGTTTAGAATTGCTCTTACATTCCTCTGAAGGTACGCAAGGTTGTTGACCACTGCAAATGAAAGTCATTTGGGAAGAATGGCTCTCTGGAATTGGCACATTGTTAAGTCATTTGTTGAAAACAGAGTAATATCAATACAAATATGCATGaaagatactgtatgtatggcTCTTGGTATGACAATATGAACAAGGTTTAATGTTCATACAGCAATGCATTTAAATGTAGTCATGATATTCAGTACTTGTACTGATTACTCCAATATTTCAAGAACATATGTTAacttttttgtgctggtcaataTTGTTATGTATTGTAACCATACATTTGTCTTTTATTCTATGTGTCTATTTTAACGTATTGAATACAAATCCATTTCCTTGCTTTGGTGAATAAACTTTGTTTGCTTTTTATCTA
>TU795690
CACTGCTTAATGTTCCCTGAAATGTGTATGCCAGCTGGTTGACGGAGCGCCGAGCCCCACTATGCACTTGTTTATCTTCTGGTTCCACTGGAACATCCAGCTCCTCCGCTATTTTAGAAgttttgaatcctaagcaacctgcatacacattgtttgaagtacaatagaccaacatagctactgtagtaggtcaaatctgtgtgctggaaaaccttggtagagcatggatggagtaggcattgtggtgctcatgtgaatttcctttatttttttggcTTCAGAACAATGCTTACTTCTGACttaaaacaacatatttttttgtttttaattacacaaggctctggtcaaaagtagtgtactgtatagaGACAGAAATGTTTAAGCTATTCACTGCACACTGTTTCTAATTCTCACTTATCCACATCACTCTGTTCCCCTGCAGAGCTCCTCACCAGATGGCCTGGTGTCCATTCTGAAAAGGAGGAGGGCGTCGTTAGATGGCCTGCCCCCAGAGGGTCCCGATGCAGCCAAACAGAACTCCAAACGCAAGGTGCGCTTCAGCGAGCCAGAGGATGGCATGGAACCAGaggaggtgggtggagactCTTGTTTGatcctgctgttgttgtgcttaGTAACCGTGGTGATCAGTCTGGGCGGGACTGCTCTGTACTGCACCCTAGTGGACACCTACAGTAGTATCTGCACCGACTTCTCTCACAACGTGGACTTTTACGTGGTCCAAGTACGACACTTCCTGGACGGGCTCAGACACTGGCTGTCCATACGCTCATAGTCAGCACAGTCTATCGGAGCAGTAAGGACATACAGTCAGTCGCCTGCTGCAGCAGTATATGGACTTATACAGAAGCCCACCTACTGCTACAGTCTAGGGACTCTTATGAAACCCTAGGAGGAAGACAAGCAAAAATATACTGTAAGACTGGTAACACTATTGGTTGGAGAGAATGCTTTAGGTGAAGTCAGACACTGGCTCCCCAAACTGTCCAAGCCAGGGAATAGATTCACTATACTGTATGAACTGCTCTGAGACTGAGACAAGATGGAGCACCTTACCCTAGTCCCAGTATGAATTAGAGAAGGTCATTGAAGTTCTGGGATAGGGTCTGAAATAGAGTGAACGGGCTTGTGAGCATTGATGTAACAGGAGGCACAGGTGCAGACATTTTGAACTACTGACATTTCATATGCAGACCAAACTGTTTCCGGAACACTGCCTCCTCTTGTTTTTGACCAGAAGTTTTTAACCTCGAGATGGACACAGCACAAAAGAGCTCCCAAAAACACGCAAAGGAACAAAACACAGCATTGTAAAGTATATTCTAGttggattttttattttaaaaaaatataggtTTATCTGAATTTGTAAAGATGTTTATCTGAAAAACAGATACAATTCAGATAAACCGTAAAGATGTTTATCTGAATTTGAAAGCCTTGTGGTAAAATTTGGGGTACAGTATgccaataaaaaaaacagacattttgGGGGATTGAaaggacacttttttttttattatcaacaTTTCTGTGTTTTTCATGACAAGTCTTCTCGACTCCTTGACTTGTCAAATGTAGCCTACACGTTGTACATTTTACAGCTGTTTTTGTACATGGAGACATGGGTTTAGAATTGCTCTTACATTCCTCTGAAGGTACGCAAGGTTGTTGACCACTGCAAATGAAAGTCATTTGGGAAGAATGGCTCTCTGGAATTGGCACATTGTTAAGTCATTTGTTGAAAACAGAGTAATATCAATACAAATATGCATGaaagatactgtatgtatggcTCTTGGTATGACAATATGAACAAGGTTTAATGTTCATACAGCAATGCATTTAAATGTAGTCATGATATTCAGTACTTGTACTGATTACTCCAATATTTCAAGAACATATGTTAacttttttgtgctggtcaataTTGTTATGTATTGTAACCATACATTTGTCTTTTATTCTATGTGTCTATTTTAACGTATTGAATACAAATCCATTTCCTTGCTTTGGTGAATAAACTTTGTTTGCTTTTTATCTACTGTATGTCCaggctggtctcatagactagacgtaacatagtaaacaaaaatccggggacactcaaattagtataatatgttacgtTCAGTATGGCTGCTTAAGACGTAAgtttacttaaggcaaaaacgaaagtggagagggagggtgggCAACTCAAATGTCTAGCAACACAGGGAAGGTAACTCAAACATCTAGCAAACCAACGGTTgcatgttcgaatctcatcacggataACTTTAGCCAtttttagcaactttgcaactacttactactttttttgCACACCCAGTAGATTTCCAGGACCAGAGTTGGAGAACCCTGTTCTAAACCTAGTGCTTGGTTTTGTGAATGTGTTTGAAGGAAATCAAGACAGAAAGTCACAGTTTGGCATTGGAATGTCCCTAATGACATACTACTTACTCTAATGGGCATGATCTTCTATCCATTGTCTGACATTGGTGTCTGGTAAAAGTAGTATTTCCTCCCATATGCTCTCCAAGAGTgctattcaatctgtatcactGAAGCGTTGCAGATTTGCGTGATATAAATAATTTGAAAGGTAATTTCATATTGAAGCGACATCTGCAGCGTTGACCTGAATGCAGTCTCAGCTAATGTGGGaacatagagccccacagtggagataAAAcctaaaacctagcggtcaaatggggaaatggttccaattgtttttccaccattaattTTTCCAATAGGGAATTTGAGaaacttaaaataagggctgtgctTCATGTAGGCGTACCCTGGTGTGACGTTTAGATAACCAtttaaatctctctcggacaaggtgacttttatcaatatattcggctctatttacACTCAGTTTCGAAAATGCTCATTATagtcaaagtagacatcatgcaaaactacaaatccctgcaagttctctctagctgacacctttgatTACTGGTACTGTGCcaatttaaaacttgcaaaaGACAATATATGGATTGAAATAAGTCGTAGATGGCTGTGGTTGAGTAATGTCAATGAATGTTGCCTCTAATTGTCACTGTAGCAGCCTATGTTGTTTGCAATTGTGTTGCATCATCCAATCCATGTTTATATGTTGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985367.1 False 2147 mRNA 0.42 3 33909753 33918953
XM_036985366.1 False 2803 mRNA 0.41 3 33915522 33918953
TU795690 True 3170 lncRNA 0.40 3 33916718 33941058

Neighbor

gene id symbol gene type direction distance location
LOC110529839 LOC106571597 coding upstream 1298 33889753 ~ 33908455 (+)
LOC110529837 LOC106571584 coding upstream 22769 33850636 ~ 33886984 (+)
LOC110529835 LOC106571598 coding upstream 80979 33823071 ~ 33828774 (+)
fzd3a fzd3 coding upstream 190118 33689214 ~ 33719635 (+)
LOC110529830 LOC106571599 coding upstream 228916 33656633 ~ 33680837 (+)
LOC118965511 LOC106571597 coding downstream 1298 33920251 ~ 33930473 (+)
LOC110529838 LOC106571596 coding downstream 17573 33936526 ~ 33955195 (+)
LOC110529845 LOC106571588 coding downstream 240015 34158968 ~ 34166714 (+)
LOC110529844 hs90a coding downstream 248117 34167070 ~ 34177609 (+)
LOC110529847 LOC106571593 coding downstream 259344 34178297 ~ 34218679 (+)
G699251 NA non-coding upstream 22240 33887159 ~ 33887513 (+)
G699250 NA non-coding upstream 27583 33881872 ~ 33882170 (+)
G699240 NA non-coding upstream 46988 33862523 ~ 33862765 (+)
G699239 NA non-coding upstream 48878 33860648 ~ 33860875 (+)
G699189 LOC106571586 non-coding upstream 73277 33834372 ~ 33836476 (+)
G699270 NA non-coding downstream 50539 33969492 ~ 33969708 (+)
G699273 NA non-coding downstream 52965 33971918 ~ 33972126 (+)
G699274 NA non-coding downstream 54136 33973089 ~ 33973328 (+)
G694036 NA other upstream 4117006 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 4971480 28930668 ~ 28939888 (+)
G693207 NA other upstream 5204001 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 5351380 28495104 ~ 28605625 (+)
G692424 NA other upstream 5839525 28069900 ~ 28070228 (+)
G699605 NA other downstream 208640 34127593 ~ 34128301 (+)
LOC110529856 LOC106571576 other downstream 1535895 35454437 ~ 35462086 (+)
G700685 NA other downstream 1694211 35613164 ~ 35614666 (+)
G700864 NA other downstream 1985096 35904049 ~ 35904698 (+)
G702415 NA other downstream 2781485 36700438 ~ 36700739 (+)
LOC110529842 LOC106571600 coding downstream 433678 34374736 ~ 34387036 (+)
LOC110529849 NA coding downstream 612734 34553792 ~ 34557596 (+)
G699516 NA non-coding downstream 75984 34017042 ~ 34017773 (+)
G699519 NA non-coding downstream 80190 34021248 ~ 34021509 (+)

Expression


Co-expression Network