LOC110529840 (LOC106571603)


Basic Information

Item Value
gene id LOC110529840
gene name LOC106571603
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33975488 ~ 34009377 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985370.1
TGCCAAGCATGTGTACATCTATTATGTTATCTATTTCTCACGATAAAGCCACAAACGTAATACTAAACAATACTGGTTTTGATGAAGAAAATGTCTAGACTCTACGGCTGAGATGTGACACCACGATTCGACACTGTGAACACATTCACATGCTTTTGTTTTGCCTAAAAATACATGGCGATTTCCATCGAGCCGTTACCGGTCCACGTGCAGCTTCCCATTTCCAACCCTGCAGAAGTGTGGATCTTTTTGACAGATATCGATTCAAAGCTGCTGACGTCAAAAGCATCCTCCATCTTTTACGATTGCAGAGATGCTGCTTTTCATTGAAGAAGAACTGAGGAGGTGTCAACCATGCGCACTGCCTTTGTGACAATCCAGTCATATCTGATATCTGTTAGTTGTTGAAATTTGTGGACATCTGCTCCTCCTGCTGACTGCAAGCCACCGACCACGGGCACAGCCTATCCCCGGCCTCCCATTAGAACCTACTCTTCCCCGTTGGAGACCAGCTCCACCACGCACAGCCAGCAGCTATGGCTGAAGACTTGGACATGCGCAACGAGCTGTCGGATATGCAGCAACGCGCCGACCAGCTTGGAGATGAGTCGCTGGAGAGCACTCGTCGTATGCTACAGCTGGTGGAAGAGAGTAAAGATGCTGGTATCAGGACTTTGGTTATGTTGGACGAGCAAGGAGAGCAACTGGAGCGCATCGAAGAGGGAATGGACCAAATCAATAAGGACATGAAGGATGCAGAAAAGAATTTGAACGATCTAGGAAAATTCTGTGGTATTTGCTCCTGCCCATGTAACAAgatgaAGAGTGGCGGCAGCAAGGCTTGGGGGAACAACCAGGATGGGGTGGTGGCCAGCCAGCCTGCCCGTGTGGTGGACGACCGCGAACAGATGGCCATCAGTGGAGGATTCGTTCGCAGGGTAACAGATGATGCCCGGGAAAATGAGATGGATGAGAACCTGGAACAGGTGGGAGGCATCATCGGTAACCTGCGCCACATGGCCCTGGATATGGGCAATGAGATCGACACCCAGAATCGACAGATTGACAGGATCATGGAAAAGGCTGATTCTAACAAGACCAGGATTGACGAAGCCAACCAACGGGCCACTAAGATGCTGGGCAGTGGCTAAGCTCCCAGAACATGTTGCTTTTCCCGCAATTGCAATTTATTGTCATGGTATTTACCTTCTAGGTTTGCACATGTGCACATATCACCTCCCCACATTGTAAATGTTGTTCTGTGCATCCTTTGTCTGGCTTTTTCAATGATTGTCCTCGTAAAATGAAATATTTCTTATCCTCTGTATCATTCTTTCCAAAGATTGTATACAGTGCTGACTCGATGGCTCTAGTTCACTTGTGAAGTTTTTATTCTCTTTATCAAATATAGtaaatacaggtaactgccaaaataaaggaaacacttgagtagaTTAGGGTTCTGGCGGCTCTGTTTTGCTGTGAGTGCATTTTCCTGGCATGATTTAGGTCCATTCAACCTCTTCGAGGGCAAGGTAAACAACAATAAATACACAGCCATTCTGAGAGATCACCTTCAACCTATGCTGAAGCATTTCTATTGTGATAGGAGTGGTCTCTttcaggatgacaatgcccccatccacagggcacgggTGGTCACTGAACgttttgatgagcatgaaaatgaaATAAACCATAttccatggccatctcagtcaccagttctcaacccaattgaacactgatgggagattctggagtggcgccttggaacagcgttttccaccatcgtcaacaaaacaacaaatgatggaatttcttgcggaagaatggtgtcgcatccctccaatagagttccggacacttgtagaatctatgccaaggcacacTGAAAATGTTCTGGTGGCTtgtggtggcccaatgccctacTATGATACTTTATGATGGAATTTCCTTTATTCTGACAGAtacctgtatatactgtataaggATACACTGCCAGATGACAAATATAATAGGAATGCTATACAAGCTGTTTCCCTTGTCAGTATCTCAGTATTGTCTTTGTAAAACTGTATCATTCCATCAGCTACTGTCATGCTCCTTATTTTGATGTTGTCATGACAAATGAAGAAGAGGGAAAAAAATACGATGATTACAAATTATAGTCAATTCAAAAAGCACTTAAGGACAA
>XM_036985371.1
TCCTCCTGCCAAGCATGTGTACATCTATTATGTTATCTATTTCTCACGATAAAGCCACAAACGTAATACTAAACAATACTGGTTTTGATGAAGAAAATGTCTAGACTCTACGGCTGAGATGTGACACCACGATTCGACACTGTGAACACATTCACATGCTTTTGTTTTGCCTAAAAATACATGGCGATTTCCATCGAGCCGTTACCGGTCCACGTGCAGCTTCCCATTTCCAACCCTGCAGAAGTGTGGATCTTTTTGACAGATATCGATTCAAAGCTGCTGACGTCAAAAGCATCCTCCATCTTTTACGATTGCAGAGATGCTGCTTTTCATTGAAGAAGAACTGAGGAGGTGTCAACCATGCGCACTGCCTTTGTGACAATCCAGTCATATCTGATATCTGTTAGTTGTTGAAATTTGTGGACATCTGCTCCTCCTGCTGACTGCAAGCCACCGACCACGGGCACAGCCTATCCCCGGCCTCCCATTAGAACCTACTCTTCCCCGTTGGAGACCAGCTCCACCACGCACAGCCAGCAGCTATGGCTGAAGACTTGGACATGCGCAACGAGCTGTCGGATATGCAGCAACGCGCCGACCAGCTTGGAGATGAGTCGCTGGAGAGCACTCGTCGTATGCTACAGCTGGTGGAAGAGAGTAAAGATGCTGGTATCAGGACTTTGGTTATGTTGGACGAGCAAGGAGAACAACTCGATCGTGTTGAAGATGGCATGAACCATATCAACCAAGACATGAAGGAGGCCGAGAAAAGTTTAAAAGATTTAGGGAAATGCTGTGGTCTTATCATATGTCCCTGTAACAAgatgaAGAGTGGCGGCAGCAAGGCTTGGGGGAACAACCAGGATGGGGTGGTGGCCAGCCAGCCTGCCCGTGTGGTGGACGACCGCGAACAGATGGCCATCAGTGGAGGATTCGTTCGCAGGGTAACAGATGATGCCCGGGAAAATGAGATGGATGAGAACCTGGAACAGGTGGGAGGCATCATCGGTAACCTGCGCCACATGGCCCTGGATATGGGCAATGAGATCGACACCCAGAATCGACAGATTGACAGGATCATGGAAAAGGCTGATTCTAACAAGACCAGGATTGACGAAGCCAACCAACGGGCCACTAAGATGCTGGGCAGTGGCTAAGCTCCCAGAACATGTTGCTTTTCCCGCAATTGCAATTTATTGTCATGGTATTTACCTTCTAGGTTTGCACATGTGCACATATCACCTCCCCACATTGTAAATGTTGTTCTGTGCATCCTTTGTCTGGCTTTTTCAATGATTGTCCTCGTAAAATGAAATATTTCTTATCCTCTGTATCATTCTTTCCAAAGATTGTATACAGTGCTGACTCGATGGCTCTAGTTCACTTGTGAAGTTTTTATTCTCTTTATCAAATATAGtaaatacaggtaactgccaaaataaaggaaacacttgagtagaTTAGGGTTCTGGCGGCTCTGTTTTGCTGTGAGTGCATTTTCCTGGCATGATTTAGGTCCATTCAACCTCTTCGAGGGCAAGGTAAACAACAATAAATACACAGCCATTCTGAGAGATCACCTTCAACCTATGCTGAAGCATTTCTATTGTGATAGGAGTGGTCTCTttcaggatgacaatgcccccatccacagggcacgggTGGTCACTGAACgttttgatgagcatgaaaatgaaATAAACCATAttccatggccatctcagtcaccagttctcaacccaattgaacactgatgggagattctggagtggcgccttggaacagcgttttccaccatcgtcaacaaaacaacaaatgatggaatttcttgcggaagaatggtgtcgcatccctccaatagagttccggacacttgtagaatctatgccaaggcacacTGAAAATGTTCTGGTGGCTtgtggtggcccaatgccctacTATGATACTTTATGATGGAATTTCCTTTATTCTGACAGAtacctgtatatactgtataaggATACACTGCCAGATGACAAATATAATAGGAATGCTATACAAGCTGTTTCCCTTGTCAGTATCTCAGTATTGTCTTTGTAAAACTGTATCATTCCATCAGCTACTGTCATGCTCCTTATTTTGATGTTGTCATGACAAATGAAGAAGAGGGAAAAAAATACGATGATTACAAATTATAGTCAATTCAAAAAGCACTTAAGGACAA

Function

NR:

description
synaptosomal-associated protein 25-A isoform X2

GO:

id name namespace
GO:0000281 mitotic cytokinesis biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0031083 BLOC-1 complex cellular_component
GO:0030054 cell junction cellular_component
GO:0031201 SNARE complex cellular_component

KEGG:

id description
K18211 SNAP25; synaptosomal-associated protein 25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985370.1 False 2197 mRNA 0.45 8 33975488 34009371
XM_036985371.1 True 2203 mRNA 0.45 8 33975488 34009377

Neighbor

gene id symbol gene type direction distance location
LOC110529836 LOC106571586 coding downstream 133886 33831672 ~ 33841602 (-)
cdc42bpab LOC106571585 coding downstream 153250 33719374 ~ 33822238 (-)
LOC110529832 fbxo16 coding downstream 286436 33685369 ~ 33689052 (-)
LOC110529828 LOC106571602 coding downstream 426180 33484801 ~ 33549308 (-)
LOC110529827 LOC106606921 coding downstream 517016 33454287 ~ 33458472 (-)
ankef1a LOC106571587 coding upstream 7633 34017010 ~ 34029131 (-)
LOC110529846 LOC106571592 coding upstream 127181 34136558 ~ 34157637 (-)
LOC110529843 LOC105030678 coding upstream 246138 34255515 ~ 34257262 (-)
LOC110529848 LOC106571583 coding upstream 535779 34545156 ~ 34550128 (-)
LOC118965512 NA coding upstream 788468 34797845 ~ 34799304 (-)
G699487 NA non-coding downstream 6244 33968663 ~ 33969244 (-)
G699486 NA non-coding downstream 8061 33967135 ~ 33967427 (-)
G699480 NA non-coding downstream 16255 33959013 ~ 33959233 (-)
G699479 NA non-coding downstream 16632 33958571 ~ 33958856 (-)
G699476 NA non-coding downstream 19574 33955577 ~ 33955914 (-)
G699490 NA non-coding upstream 568 34009945 ~ 34010163 (-)
G699515 NA non-coding upstream 6542 34015919 ~ 34016237 (-)
G699531 NA non-coding upstream 8764 34018141 ~ 34018557 (-)
G699537 NA non-coding upstream 23844 34033221 ~ 34033456 (-)
G699582 NA non-coding upstream 100416 34109793 ~ 34110288 (-)
G699468 NA other downstream 23132 33943022 ~ 33952356 (-)
G698356 NA other downstream 985427 32989245 ~ 32990061 (-)
G697774 LOC106571626 other downstream 1476078 32498799 ~ 32499410 (-)
LOC110529804 ypel5 other downstream 1757939 32214451 ~ 32217572 (-)
LOC110529793 LOC106571728 other downstream 2295753 31657632 ~ 31703525 (-)
G701454 NA other upstream 1573621 35582998 ~ 35589877 (-)
LOC110529865 LOC106571568 other upstream 1631978 35633473 ~ 35705333 (-)
G701618 LOC106571560 other upstream 1891246 35900623 ~ 35918175 (-)
LOC110529880 LOC106571768 other upstream 3345719 37355096 ~ 37361922 (-)

Expression


Co-expression Network