LOC110529846 (LOC106571592)


Basic Information

Item Value
gene id LOC110529846
gene name LOC106571592
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 34136558 ~ 34157637 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612441.2
TCTAGAATCAATTGCCGAGCGCATGCTCTGTGGGGAAGATCCGGGTTTTGGACAGGATGAACGCCAATTTCCAAGATGGCggcggagggaggagggaaggagatgaaCGAAATTAAAACTCAATTCACCACTCGGGAAGGTGTCTATAAACTCCTCACTCACTCCGAATATAGCCGCCCTAACAGGGTGCCTTTCAATTCACAGGGCTCGAATCCGGTGAAAGTCTCCTTCGTGAACGTCAACGACCAGTCCGGCAACGGCGACAGAATCTGTTTCAATGTGGGCCGGGAACTGTATTTTTATATCTACAAAGGCGTAAGAAAGGCGGCTGACCTGAGCAAGCCCATAGACAAGAGGATCTACAAAGGAACGCAGCCCACGTGTCATGACTTCAACCCCCTCACAGCCACAGCGGAGAGCGTCTCCCTGCTCGTGGGTTTCTCGGCCGGCCAGGTGCAGCTCATTGACCCAATCAAGAAGGAGACCAGCAAGCTCTTCAATGAGGAGagaCTGATAGACAAGTCTCGTGTGACATGTGTACGGTGGGTTCCTGGCTCAGAGAGCCTCTTCCTAGTGGCCCACTCCAGCGGCAGCCTGTACCTGTACAACGTAGAGCACACCTGTGGCACCACGCCACCCCACTACCAGCTTCTCAAACAGGGCGATGGCTACGCCGTGCACACCTGCAAGAGCAAGTCGGCCCGCAACCCCCTACTGCGCTGGACAGTAGGCGAGGGGGCGCTGAACGAGTTTGCCTTCTCCCCCGATGGGAAGTTCCTTGCGTGCGCCAGCCAGGACGGCTTCCTGCGCGTGTTTGGCTTCGATGCAGCCGAGCTGCACGGCACAATGAAGAGCTACTTCGGTGGGTTGTTGTGCGTGTGCTGGAGCCCGGACGGACGATATATAGTGGCCGGGGGGGAGGACGACCTAGTGACCGTCTGGTCCTTCTCAGACTGCAGGGTGATCGCCAGGGGCCACGGCCACAAGTCGTGGGTGAGTGTGGTGGCGTTTGATCACTGTACTACCAGCGTGGAGGACAGCGACCCACCCGCCGAATTCAGCGGGAGTGACGAGGAGTTCCACGAGCAGATCCACTTTGGAGGGGGGCGGGACCGGGCTAATAGCTCCCAATCACATCTTTCCAAGAGGAACTCTACAGACGGCAGGCCAGTCAGCGTGACCTATCGCTTCGGCTCGGTGGGCCAGGACACCCAGCTGTGTCTGTGGGACCTGACTGAGGACATCCTGTTTCCCCACCTGCCCCTGTCACGTACCAGAACTCACACTAACGTCATGAGTGCCACCAGCCCCCCGGCTACTGGGGCggccactactaatactactactactactactactgctgctgctgctactaccactactactactactactactactgctactactgctactactcctactactaacCCACCTGGTACCAATGGCAACAACACAgtgagcagtagtagtggtaacaGTGGCGCCCCAGCTAACTCGCTCCCTGCCCCCCTGCCGCGCTCCAACAGCCTGCCACACTCCTCCGGCCCCGCAGGGGGCAGCACCACGCCTAACTGCCACACGACCAGCAGCAAAGGAAGCAGCATCATCGACAGCACCTTCATCGCCACGGGCGTCAGCAAGTTCGCTACACTGTCGCTGCACGACACACGCAAGGAGCGCCACGAGAAGGACCACAAACGCAACCACAGCATGGGCCACATCAGCAGCAAGAGCAGCGACAAGCTCAACCAACTGAGCTCTGCGGCGCGGACGGCCAAGGCGGACGCCGCTAAGACTCTGGGCACGCTGCTGTGCCCGCGCATGGAGGAGGTTCCTCTGCTGGAGCCGCTGGTGTGTAAGAAGATTGCTCACGAAAGACTCACTGTGTTAATCTTCCTGGAGGACTGTCTGGTCACAGCCTGCCAGGAGGGCTTCATTTGCACATGGGCCAGGCCCGGTAAAGTGggcTTACTATCATCTCAGAACCCGGCCAACTCTCCTAGTGGGACTGTTGTATAGCCCTGGTGCTAGTGCTGCTAAACTAAACCGAGCTCCACCAGACATGACGGGACAGGATGACCTGGCCACACCTCGCCACAGCCCTGCagcgctgttctctctctctctcacacaccttcatcaccatcaccactactGAAGCTCTTTTTGTTCTGTTAATctttagatagatagatggatagctAACGTGGGCCATTGAGGGTAGATGGGTTGGCCCACAGTCTGAAAAGAGTGTAAAGGATCGTGTGAAAGGTGCAGAATGCTTGAAATCGTCCAGGAGGATTTAAAGTGTTGTTCAGAGAGGGAGGCTGGCTGCGATGTGTTTACTTTGTTTtcacctcccttcctctctcaacATTCTCTTTCCCGGTCCAAAAACAACCCCTGTAAAAGCTACAGCTTGTTTTCAGACTGGGCTTGTCTCTAATAGCGTGGCCTCCTCCAGAAACCACCCCTAGCCACTACTACCCCCTAGGCTCTTCATGTAGATCTGAAAGACCTTGGATAGGTTTAATCATTATGGTAGTAGGCAcatttctccactattcagttctCTCAGATCTAGCCTAGGTATTAGGGGCTAGGTGTTGTCTTGGGACAGGTGCTATCGCTTTTAGCTTGATCCTCATCCATGACTAACCCTGGTGGAGTTGGATCACATGTTCATAGCAAAGGGAGACCGGAGCAGTTAGCTTCCTATAactacaataaaaaaatatttttgaatttaaaTCAGAATATCACAGCTTGAGTACGTTGCACTGATTTTATTGTTTATGTAAATTTTTATTCATAATTATGACAGAAACAAGATGGTTGAAGATAGCCTTTGGATGCACTTGGGTTGTGGCGAGTAATCTCTGTCTGGATGCTAAAATcatagttgttttttttaaagaaaaagagAATTGTTTGCACTTAATAGTTTGTTAGATGAGAATGGCTTTACAATTTTGGAGTGTGCAAGGACTCCCCCGACAAGgttgttaaaaatataaatagaatTAAAAACCTTTATCtattgaacatttattttaatattgtttcagatttaaaaaatgggCTCTGTATTATATGTAAATATTGTACTTCAATGATTTGGTGAAATTATCATTGTTACACTAGTTTGAAGTTCTTCATTTCAGAAAATAGTGATATTTCTAATTCAGAAAAATATACATAATAATATTAAAAATGAATCTTGAATATGCAGGTTCATGTtttttcctttctgttgtacatAAAGAGAATTCAGGTGTATTTTTCATAATGAAATGTTTGTTATAGGAGATGTCTCTATGGAATCCTCTTTATCTAGTAGGTAGTGCTGAAAGCTAGCCTGTCGCTGCAGACTCCTCTATGTAGAAAAGTTTTCCCAGTCCCAAACTCGCTCCTGCACCCTATGCACTTGTGAAGTCCTGAGAGCATGGCCGCAGGAAGTTTTGGGTTGGGGGTGCTGTCGATGGGGTTCTGAGTAATATTTTTCTCTGCTATGCTGAGAGGATTGTATAGGAAATGTGGAAATTGAAAGACTAGATATATACTTTACCATATTGCTCATATACCTATCCAATCTTCTTAGATCGCCACAAGTGTCACAGGGCTTAGGTGCTAGTGGTTGTTTTGGGACTGGGCCGTAGGCTAAGGTAGGAGCCGTCTAATTCAGACATCACTCAGAGCTCAGGTAAACCACAGAAGACTAACGCTAACATAATTATCTTACCCATTATTAGGCCCCAGTACATAAAATATCTGAATTCACCTACCTAGTATACAAATATGACTAAACCGGTGTTATAGGTGTGTGTGGACTATGGCCGCTACATAAGTAATGACAATGGGAGTGTGTGTCAACCAGAAATGTGTGTCAACCACATTTCTGGTCAACTGACACTGTTGATAAACATCACTACTTGATGGCGGTATGAGTGCTGGGCCTTGTTTACGGGGGTGCAACATTATGAAACGTTCACATAGAAATGTATTATCTAGAAAAGATATGGGAATATCTGTCGTGTAGATGGGGACTAGAGTTAGCTCTATTCATGACATTTCTAGGTGCTCATTTCAGCTGAGCGTTTTCCGAAAGCTTCATGGCACTGAGACCATTGCCTACAATGGATGTCTATAATGATTATTTTAGCGCTGTGAAGCGTCCGGGAAACTCGCACCTGAGTGTTTCACCTCCCTGAACCCACCCCAGGAGATGAGGGAGTTTTGTGAAGCACCCAGGTAGGCAGTGTGAGGATTCTCCAAGGTCTAACAGTGGGAGTATAATTTTTTCCTCCATGTGACACCTATTAAACAACTTTGACAGAC

Function

NR:

description
WD repeat-containing protein 20-like

GO: NA

KEGG:

id description
K24741 WDR20; WD repeat-containing protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612441.2 True 4341 mRNA 0.49 4 34136558 34157637

Neighbor

gene id symbol gene type direction distance location
ankef1a LOC106571587 coding downstream 107427 34017010 ~ 34029131 (-)
LOC110529840 LOC106571603 coding downstream 127181 33975488 ~ 34009377 (-)
LOC110529836 LOC106571586 coding downstream 294956 33831672 ~ 33841602 (-)
cdc42bpab LOC106571585 coding downstream 314320 33719374 ~ 33822238 (-)
LOC110529832 fbxo16 coding downstream 447506 33685369 ~ 33689052 (-)
LOC110529843 LOC105030678 coding upstream 97878 34255515 ~ 34257262 (-)
LOC110529848 LOC106571583 coding upstream 387519 34545156 ~ 34550128 (-)
LOC118965512 NA coding upstream 640208 34797845 ~ 34799304 (-)
LOC110529850 fau coding upstream 1144917 35302554 ~ 35304730 (-)
LOC110529851 prpf39 coding upstream 1149291 35306928 ~ 35321805 (-)
G699592 NA non-coding downstream 18667 34117662 ~ 34117891 (-)
G699582 NA non-coding downstream 26270 34109793 ~ 34110288 (-)
G699537 NA non-coding downstream 103102 34033221 ~ 34033456 (-)
G699531 NA non-coding downstream 118001 34018141 ~ 34018557 (-)
G699515 NA non-coding downstream 120321 34015919 ~ 34016237 (-)
G699730 hs90a non-coding upstream 13419 34171056 ~ 34177610 (-)
G699755 NA non-coding upstream 26695 34184332 ~ 34184851 (-)
G699757 NA non-coding upstream 31429 34189066 ~ 34189394 (-)
G699803 NA non-coding upstream 116713 34274350 ~ 34274640 (-)
G699866 NA non-coding upstream 219911 34377548 ~ 34377783 (-)
G699468 NA other downstream 184202 33943022 ~ 33952356 (-)
G698356 NA other downstream 1146497 32989245 ~ 32990061 (-)
G697774 LOC106571626 other downstream 1637148 32498799 ~ 32499410 (-)
LOC110529804 ypel5 other downstream 1919009 32214451 ~ 32217572 (-)
G701454 NA other upstream 1425361 35582998 ~ 35589877 (-)
LOC110529865 LOC106571568 other upstream 1483718 35633473 ~ 35705333 (-)
G701618 LOC106571560 other upstream 1742986 35900623 ~ 35918175 (-)
LOC110529880 LOC106571768 other upstream 3197459 37355096 ~ 37361922 (-)
LOC110530908 otof other upstream 3331590 37474229 ~ 37626960 (-)

Expression


Co-expression Network