LOC110529845 (LOC106571588)


Basic Information

Item Value
gene id LOC110529845
gene name LOC106571588
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 34158968 ~ 34166714 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612440.2
CTCTTAGCCTTTACTGTAGTGGGACTGGGCATTCCTTCTGGAAGCTTCTGAATGGGGGCTTCGAGAAAGCTGCCCCTTGTATAAAAAGAATGGAGTAGGCCCAGGGGTACTCAGATACAGAAAGTGAGAAGACATTCACCAGAAGCCATAGAGGATTTAGGAGCAGTGAAATACAGAGATTTAAAGACTACATTAATCTGCAGAGGAACAGAAGTGACGCTCAGAGATTCAATCTACAGCGATCAGCAAACGAGAAGTGAAGCACCGGAGCTCATTCTTATCTATTCAAGATGCCAGAAAAAGCCGGCCACACCATGGATGAGGAAGTGGAGACCTTTGCCTTCCAGGCTGAGATCGCCCAGCTGATGTCTCTGATCATCAACACCTTCTATTCCAACAAAGAGATCTTCCTTAGGGAGCTCATCTCCAACTCTTCAGATGCTTTGGACAAGATCAGATACGAGAGCTTGACAGACCCAACCAAATTGGATTCTTGCAAGGAGCTGAAGATCGAGGTCACCCCTGACCTGCGCACTCGTACCCTGACCCTGGTTGACACCGGCATCGGCATGACCAAGGCCGACCTGATCAACAACCTGGGAACCATTGCAAAGTCTGGCACCAAGGCCTTCATGGAGGCCCTGCAGGCTGGAGCTGACATCTCCATGATCGGGCAGTTCGGTGTGGGTTTCTACTCTGCCTACCTGGTGGCTGAGAGGGTGACTGTCATCACCAAGCACAATGATGATGAGCAGTATATCTGGGAGTCTGCAGCTGGTGGCTCTTTCACTGTCAAAGTTGACACTGGGGAGTCCATTGGCCGTGGCACCAGAGTGATACTGCACATGAAGGAGGACCAGTTTGAATACTGTGAGGAGAAGCGCGTCAAGGAGGTTGTGAAGAAGCACTCTCAGTTCATTGGCTATCCCATCACACTCTTTGTGGAGAAGtctagagagaaagaggtggaccttgaggagggagaaaaggatgAGGAGGCTGATAAAGATTCTGCAGCTGAGGACCAAGACAAGCCCAAGATCGAAGATGTCGGTTCTGATGAGGATGAGGACACCAAGGATTCCAAGAACAAGAGGAAGAAGAAGGTCAAGGAGAAGTACATTGACGCAGAGGAGCTGAATAAGACCAAGCCTATCTGGACCCGTAACCCTGATGACATCACCAATGAGGAGTATGGAGAGTTCTACAAGAGTCTGACCAATGACTGGGAGGACCACCTGGCTATCAAGCACTTCTCAGTGGAGGGCCAGCTGGAGTTCCGCGCTCTGCTTTTTGTGCCCAGGAGGGCTTCCTTCGACCTCTTtgagaacaagaagaagaagaacaacatCAAGCTGTACGTGCGCAGGGTGTTCATCATGGACAACTGTGACGAGCTGATGCCAGAGTATCTCAACTTCATTAAGGGTGTGGTGGACTCTGAGGATCTCCCCCTGAACATCTCCAGAGAGATGCTGCAGCAGAGCAAGATCCTCAAGGTGATCCGCAAGAACCTGGTCAAAAAGTGTATGGATCTTTTCATCGAGCTCTCAGAAGACAAGGACAACTACAAGAAGTTCTATGAGCAGTTCTCCAAGAACATCAAGCTGGGAATCCATGAAGACGCTCAGAACCGCAAGAAGCTGTCAGACATGCTGCGCTACTACACCTCCAACTCCAACGCTGACGAAATGGTCTCCCTGAAGGAGTATGTTTCTCGCATGAAGGACACCCAGAAACACATCTACTACATAACTGGTGAGACCAAGGAACAGGTCGCCAACTCTTCCTTTGTAGAGCGCCTCCGCAAGGCCGGCTTGGAAGTAATCTACATGATTGAACCCATTGATGAGTACTGTGTCCAGCAGCTGAAGGAGTATGATGGCAAGAACCTGGTCTCTGTGACCAAGGAGGGTCTGGAGCTGCCTGAGGATGAGGATGAGAAGAAGAAGCAGGAGGAGCTGAACACTAAATTCGAGAACCTCTGCAAGACCATGAAGGACATCCTGGACAAGAAAATTGAGAAGGTTTCAGTTTCCAACCGCCTGGTCTCCTCCCCCTGCTGCATCGTCACCAGTACATATGGCTGGACGGCCAACATGGAGAGAATCATGAAATCTCAAGCTCTCAGAGACAACTCCACTATGGGCTACATGACAGCCAAGAAGCACCTGGAGATCAACCCAACACACCCTATTGTCGAGACTTTGAGAGAGAAAGCTGAGGCTGACAAGAACGACAAAGCCGTAAAGGACTTGGTCATCTTGCTGTTCGAGACTGCTCTATTGTCATCTGGGTTCACGCTGGACGACCCTCAGACCCATGCAAACCGCATTTACAGGATGATTAAGCTTGGCCTGGGCATCGATGGTGATGACTCAGCAGTGGAGGAAATCCTCCAGCCCAGTGAGGATGACATGCCTGTCTTGGAGGGAGATGATGACACATCAAGAATGGAGGAAGTTGACTAAAGATATATCAGAAGTACATCATTTTTTCCCTTTTTAACATTTAATTTTTTAAGTTACTTCATTGTGTCCCAAATAGACTTTACGTTTTCATGACTGCTGAGTCGTGGGGAAAGTGTTGTAATTAATTCATCATAATTAATGAATACCATAATTATATAGTatatctgctgttttcaaccctATTCAACTGTAAAAGTCAACAGGGATTTGACGTGTGTCTTTATCTATTTCTGTAAGCTATTTTCTATGAAAAACGACAAGgtttataataaaaaaatattttgaaacaTA

Function

NR:

description
heat shock protein HSP 90-alpha 1-like

GO: NA

KEGG:

id description
K04079 HSP90A, htpG; molecular chaperone HtpG

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612440.2 True 2762 mRNA 0.48 11 34158968 34166714
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Neighbor

gene id symbol gene type direction distance location
LOC110529838 LOC106571596 coding upstream 203773 33936526 ~ 33955195 (+)
LOC118965511 LOC106571597 coding upstream 229517 33920251 ~ 33930473 (+)
LOC118965510 LOC106571597 coding upstream 240015 33909753 ~ 33941058 (+)
LOC110529839 LOC106571597 coding upstream 250513 33889753 ~ 33908455 (+)
LOC110529837 LOC106571584 coding upstream 271984 33850636 ~ 33886984 (+)
LOC110529844 hs90a coding downstream 356 34167070 ~ 34177609 (+)
LOC110529847 LOC106571593 coding downstream 11583 34178297 ~ 34218679 (+)
LOC110529842 LOC106571600 coding downstream 208022 34374736 ~ 34387036 (+)
LOC110529849 NA coding downstream 387078 34553792 ~ 34557596 (+)
LOC110529233 LOC106571582 coding downstream 632601 34799315 ~ 35163860 (+)
G699594 NA non-coding upstream 39177 34119553 ~ 34119791 (+)
G699589 NA non-coding upstream 40557 34117708 ~ 34118411 (+)
G699583 NA non-coding upstream 47888 34110854 ~ 34111080 (+)
G699560 NA non-coding upstream 55248 34096044 ~ 34103720 (+)
G699541 NA non-coding upstream 123236 34035520 ~ 34035732 (+)
G699638 NA non-coding downstream 18210 34184924 ~ 34185138 (+)
G699643 NA non-coding downstream 57729 34224443 ~ 34224648 (+)
G699654 NA non-coding downstream 78136 34244850 ~ 34245165 (+)
G699655 NA non-coding downstream 79106 34245820 ~ 34246246 (+)
G699605 NA other upstream 30667 34127593 ~ 34128301 (+)
G694036 NA other upstream 4366221 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 5220695 28930668 ~ 28939888 (+)
G693207 NA other upstream 5453216 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 5600595 28495104 ~ 28605625 (+)
LOC110529856 LOC106571576 other downstream 1288134 35454437 ~ 35462086 (+)
G700685 NA other downstream 1446450 35613164 ~ 35614666 (+)
G700864 NA other downstream 1737335 35904049 ~ 35904698 (+)
G702415 NA other downstream 2533724 36700438 ~ 36700739 (+)
G702687 NA other downstream 2891631 37058345 ~ 37059223 (+)

Expression

LOC110529845(LOC106571588) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 125.
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LOC110529845(LOC106571588) Expression in each Bioproject

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LOC110529845(LOC106571588) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
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Co-expression Network