LOC110529843 (LOC105030678)


Basic Information

Item Value
gene id LOC110529843
gene name LOC105030678
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 34255515 ~ 34257262 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052864.1
ctctctatctctctctccctcctctatccatctctctctctcagttgacGGGAGGTAATCCCCGCCATGTGAGAGGGCGGCACGAGCTGTGGAGGTGGGTTGTTTTTCATTCACATCCTGCTGCACCTATAAAAAGCACAACTCTGTGAGACAGAGCCTGAAAACAGATGGGAAAAGGTGACTGATACGATTGTCTATATCTGCATGCTTACATTGCCGGCCAGACATCATCGGCAGGGCGAGATGCAGAAGTCTGCAGGTGTCCTGACGGTGCTGGCCCTGAAACACACAGCTCTATGTCTGATTCTGCTGCCCCGGTTCCTCCTGGCAGCGCTGATGCTGTGTCTCCTGGACGTCCTGTGTATCAGGAGGAAAGTGCTGCTGAAGATGGAGGGCAGCAGCCCCGAAGACCCGCCTGTCTGCGTCTCCGACTCCAACAAGATGTTCACCCTGGAGTCGCTCAGGGCCGTGTGGTACGGGCAGAAATTAGACTTTTTCAAATCCGCGCACCTTGGACTTATCGCGCCCAACACTGAGGTTGTGCAGCTGCAGGAGCGGCGCAGGGTCAGGGTCCTAGACTATGTGAAAGGGAGGAGACCTCTCATCCTCAACTTCGGCAGTTGCTCCTGACCACCGTTCATGACGCGCCTGGCTGCGTTTCAGCGCGTCGCGAGCCAGTATGCGGACATCGCCGACTCCCTGCTTGTATATATCGAGGAGGCGCATCCCTCGGACGGCTGGGTGAGCTCCGACGCGCCATACCAGATCCCCAAGCACTGCTGTCTGGAGGACAGACTGAAAGCCGCTCAGCTGATGCACTCGGAGGTTCCCTGCAGCAGTGTGGTGGTGGATACTATGGACAACTCGTCCAACGCGGCTTACGGAGCCTATTTTGAGAGACTTTATATCCTGAGGGATGAGCGGGTCGTGTATCAGGGGGGCAGGGGACCGGAGGGCTACCGGATATCAGAGCTTAGGAACTGGCTCGAGCAATACCGGAATGATTTGGAGAATTCCAGCAGAACAGTGGTGGTCCACGTTTAACTTAAAGATAACCATTAGGCGCGTGAAGTGTCCACACAGTGAAGAAGTATTCAGATGCTGCTACAAACTCTTGACACACTGCACATATGACTAGGCCTATACATGTTGTTTTGGTTCAGAAGCATTATAGAATTAGTACACATATTAGTAATGTTTATTATGATGTAAAACGCACGATAGGCTTAGTTGTTCAGTTGTGCTCGTCTTGACACTAATTATTTgtttggttgtttgtttgtttttgtaagGAGCTGTCTTTGATTTGAACCTGTGCAAAAGTTTTACTTATTTCAGTTTGACCTTCATTTGATTATGATCACTTTATTTTTTATACTATATGGTCtctaccttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagtgtgtgcgtgcgtgcgtgaggcTAAATGGCTAAAACCTTTTACTCTAGTGTTGTTGTGAAGTTCGGTTTTTAAAGGGTTTTAAACCAGGAAACTGATACTGATGTTGTTTGATACTAGAGTACTTGGCGACTAGCAATGTCTTCAACGAACAAATTGCCAAACGGTTCTGTAAATTGTTTATATTTTATTGAACaaatatttgtaataaatgttaGAACA

Function

NR:

description
TPA_inf: deiodinase 3a

GO:

id name namespace
GO:0042446 hormone biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005886 plasma membrane cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004800 thyroxine 5'-deiodinase activity molecular_function
GO:0033798 thyroxine 5-deiodinase activity molecular_function

KEGG:

id description
K07754 DIO3; thyroxine 5-deiodinase

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052864.1 True 1748 mRNA 0.49 1 34255515 34257262

Neighbor

gene id symbol gene type direction distance location
LOC110529846 LOC106571592 coding downstream 97878 34136558 ~ 34157637 (-)
ankef1a LOC106571587 coding downstream 226384 34017010 ~ 34029131 (-)
LOC110529840 LOC106571603 coding downstream 246138 33975488 ~ 34009377 (-)
LOC110529836 LOC106571586 coding downstream 413913 33831672 ~ 33841602 (-)
cdc42bpab LOC106571585 coding downstream 433277 33719374 ~ 33822238 (-)
LOC110529848 LOC106571583 coding upstream 287894 34545156 ~ 34550128 (-)
LOC118965512 NA coding upstream 540583 34797845 ~ 34799304 (-)
LOC110529850 fau coding upstream 1045292 35302554 ~ 35304730 (-)
LOC110529851 prpf39 coding upstream 1049666 35306928 ~ 35321805 (-)
LOC110529854 LOC106571577 coding upstream 1169054 35426316 ~ 35429137 (-)
G699757 NA non-coding downstream 66121 34189066 ~ 34189394 (-)
G699755 NA non-coding downstream 70664 34184332 ~ 34184851 (-)
G699730 hs90a non-coding downstream 77905 34171056 ~ 34177610 (-)
G699592 NA non-coding downstream 137624 34117662 ~ 34117891 (-)
G699582 NA non-coding downstream 145227 34109793 ~ 34110288 (-)
G699803 NA non-coding upstream 17088 34274350 ~ 34274640 (-)
G699866 NA non-coding upstream 120286 34377548 ~ 34377783 (-)
G699868 LOC107678310 non-coding upstream 122645 34379907 ~ 34380295 (-)
G699871 NA non-coding upstream 125386 34382648 ~ 34382888 (-)
G699872 NA non-coding upstream 125665 34382927 ~ 34383463 (-)
G699468 NA other downstream 303159 33943022 ~ 33952356 (-)
G698356 NA other downstream 1265454 32989245 ~ 32990061 (-)
G697774 LOC106571626 other downstream 1756105 32498799 ~ 32499410 (-)
LOC110529804 ypel5 other downstream 2037966 32214451 ~ 32217572 (-)
G701454 NA other upstream 1325736 35582998 ~ 35589877 (-)
LOC110529865 LOC106571568 other upstream 1384093 35633473 ~ 35705333 (-)
G701618 LOC106571560 other upstream 1643361 35900623 ~ 35918175 (-)
LOC110529880 LOC106571768 other upstream 3097834 37355096 ~ 37361922 (-)
LOC110530908 otof other upstream 3231965 37474229 ~ 37626960 (-)

Expression


Co-expression Network