LOC110529848 (LOC106571583)


Basic Information

Item Value
gene id LOC110529848
gene name LOC106571583
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 34545156 ~ 34550128 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612449.2
TCCATGTCGTTACATTGTTTATCATCTTACAGTTCAATGGTTCAGTTCCACCCGATGCTGTCAATTCAATGCAACATTGTAGCACAGCCAATAATATCATTTTTATGTCTCGTGAGCCCCACCTCCGGAGTAATGCATTGTGGGAGCCAGAGGTAGGCAGTGGTTTGGTATTTTGTGccagcgttagctagctagccggtTAATGTGGTAATTTTGATCAGAAATtgggagcaggaggagagaagtGATGGAGGAGAATGAATATCTCATGTCATCGCACTGTTAATTCCGTCTGAGAACGCTGCATAATACGACTACCATTTTAGTGGGTTCCATGCACACCCTTACCCTGCAGCCTCTTAGCGACCAACATGCCTTATGGAACTCTCCCCTGGCATCACTGATATTTGACAAAAACCCATGTTTAAATTCCAAAAGTTAGCTCTAGCAACCAGCAACAGGCGTTAGCAACGAACACAATTTGAAGACGTTGTTTTCcaagcctgcctgcctccctgcctggccGCCAAACACAGCAGTACCATTTGAAATTGCAAACCTGTGTTTCTCAACAATCGTCTCCTCGCCCTGCCCAAGGGGTGACAGCCTATCATGAGATTCCGAATCTACAAGAGGAAGGTGGTGATACTGacgctggtggtggtggtgtgtggctTAGCCTTCTGGACCAGTGGGAAGCAGAAGAAGAGCAGTGGAGTGGTGGTCCCCAAAGAGGCTGATGGGGCGAGGAGAAGCAGCAGTAGTCAGGTGCATCCACAGCCACAGGCCACACCTGCAGTCAGTCGGATACCCATCGTACCACCAATCGCACCTGTAGCACCTGCCAACGATACGCAGCTGGAGAATCACTCTGAAAAACAACTGGAGAAGGAGAAAACGGTCAAACCGGATGTGGACAACACTACCCTCGTCTACCGTGCCATCGTGTTCCAGCTCAACTTTGACCAAACGGTGAGGCACGAGGAGAGGTTCAGAGCAGTGAGGAAGAAGGATgatctggtggtggtggtacaggtACACAACAGACCTGACTACCTGAGGCTGCTGGTGGAGAGTCTGAGGAAGGCCCGGGGCGTGGAGAGCATCCTGCTCATCTTCAGCCATGACTTCTGGTCCCCCGAGCTCAACCAAGTGGTGGCCTCGGTTGACTTCTGCCAGGTCCTCCAGATCTTCTTCCCCTTCAGCATCCAGCTGTACCCCCAGGAGTTCCCGGGCCACGACCCCAGGGACTGTCCCAGAGACATTCCCAGAATGGACGCCTTAAAGCTGGGTTGCATCAACGCAGAGTACCCTGACTCATTCGGCCACTACCGCGAGGCCAAGTTCTCCCAGACCAAGCACCACTGGTGGTGGAAGCTGCACTTTGTGTGGGACAGGGTCCGGGCGCTGAAGGACCACCGGGGCTTGGTGCTACTTATAGAGGAGGACCACTTCCTCTCCCCGgacttcctccacctcctcaagCTGATGTCGATCCTGAAGAGGGAGAATTGCCCAGACTGTGACATCCTGTCTCTGGGGAGCTATGGCCACATCAGCTACGCTAGCAAATCCAACAAGGTGGAGGTGAAAGCCTGGAAGTCCACCGAGCACAACATGGGCATGGCTCTGAGCAGGGAGACCTACCAGAAGCTCCTCCAATGCACTGATTCCTTCTGCACCTACGACGACTACAACTGGGATTGGTCCTTGCAGCACCTGACCGTGACCTGTTTGCCCTCCTACTGGAAGGTCATGGTGAGCGAGGCACCCCGTGTCTTCCACGCCGGGGACTGCGGAATGCACCACAAGAAGTCTGTGTGCATGCCGTCCAGCCAAAAGTCCAAGATAGAGAACATTCTTCAGAGTAGCAGCAATCAGCTGTTCCCCAAGAACTTGCTGATCACTAAGAGACTGCCAGCTAACGGGGCAGGGGGGGTGGCGCCCCATGTGAAGAACGGGGGCTGGGGGGACATTAGGGACCATGAACTCTGCAAGAGCTACCTTCGATTACAGTGAccttattatcattattatattgTTACTCTTCTCTTTTTTTGCATCCTGACTTTAAGAAAAAGAAAGCCTTTTAAAAAGTATCTTTATGGACTATTTCTTCATATTGCCTGTTTTATCGGACTGTTCCAAATAAAAAAGTATGTTGGGTTTGGAATTCTCTCTATCCAAGGCATTGATTTAGAGTATACAGTATACCCTCTGAAATGTTCTACAGTATGTAATCTGATAAAATGACTGTGGTGCCTTTTTTCCCATACATAATTGTTCAAGTGTTTCATTATTTGCATTCATAATAGCTTTTAATAGCAAGAAtgccattgttttttttttagctaaaATTAAACTGGATATGTGGA

Function

NR:

description
alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like

GO:

id name namespace
GO:0009312 oligosaccharide biosynthetic process biological_process
GO:0005795 Golgi stack cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00736 MGAT2; alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612449.2 True 2375 mRNA 0.50 3 34545156 34550128

Neighbor

gene id symbol gene type direction distance location
LOC110529843 LOC105030678 coding downstream 287894 34255515 ~ 34257262 (-)
LOC110529846 LOC106571592 coding downstream 387519 34136558 ~ 34157637 (-)
ankef1a LOC106571587 coding downstream 516025 34017010 ~ 34029131 (-)
LOC110529840 LOC106571603 coding downstream 535779 33975488 ~ 34009377 (-)
LOC110529836 LOC106571586 coding downstream 703554 33831672 ~ 33841602 (-)
LOC118965512 NA coding upstream 247717 34797845 ~ 34799304 (-)
LOC110529850 fau coding upstream 752426 35302554 ~ 35304730 (-)
LOC110529851 prpf39 coding upstream 756800 35306928 ~ 35321805 (-)
LOC110529854 LOC106571577 coding upstream 876188 35426316 ~ 35429137 (-)
LOC110529855 LOC106571575 coding upstream 912145 35462273 ~ 35473852 (-)
G699903 NA non-coding downstream 14388 34525613 ~ 34530768 (-)
G699898 NA non-coding downstream 19639 34439399 ~ 34525517 (-)
G699904 NA non-coding downstream 27877 34497340 ~ 34517279 (-)
G699877 NA non-coding downstream 147956 34396872 ~ 34397200 (-)
G699876 NA non-coding downstream 149044 34395902 ~ 34396112 (-)
G699979 NA non-coding upstream 3689 34553817 ~ 34556091 (-)
G700038 LOC100136012 non-coding upstream 92650 34642778 ~ 34643077 (-)
G700064 NA non-coding upstream 109184 34659312 ~ 34659599 (-)
G700066 NA non-coding upstream 109878 34660006 ~ 34660550 (-)
G700074 NA non-coding upstream 117195 34667323 ~ 34667818 (-)
G699468 NA other downstream 592800 33943022 ~ 33952356 (-)
G698356 NA other downstream 1555095 32989245 ~ 32990061 (-)
G697774 LOC106571626 other downstream 2045746 32498799 ~ 32499410 (-)
LOC110529804 ypel5 other downstream 2327607 32214451 ~ 32217572 (-)
G701454 NA other upstream 1032870 35582998 ~ 35589877 (-)
LOC110529865 LOC106571568 other upstream 1091227 35633473 ~ 35705333 (-)
G701618 LOC106571560 other upstream 1350495 35900623 ~ 35918175 (-)
LOC110529880 LOC106571768 other upstream 2804968 37355096 ~ 37361922 (-)
LOC110530908 otof other upstream 2939099 37474229 ~ 37626960 (-)

Expression


Co-expression Network