LOC110529849


Basic Information

Item Value
gene id LOC110529849
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 34553792 ~ 34557596 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612450.2
ATGCATTGTGGGCGGAAGACGCCCGGCAGAATATTTTTATTGGCGCATGCGCACCCGTATTCCTTCCTTTCTGACTTCCGAGCAAACGAGACAAGATGGGTCATCAGCAGCTCTATTGGAGTCATCCTAGAAAATTCGGTCAGGGATCCCGATCCTGCCGGGTATGCTCGAACAGACACGGTTTGATCCGTAAATACGGGCTCAACATGTGCCGCCAGTGCTTCAGGCAGTACGCGAACGACATCGGCTTTGTTAAGCTGGACTAAATGCATTGGATGCTGAAGGTTCCCCAGGAGGTCAAACCAACTGGGAACGGGATGATCCagcaataaaaataaatgttttctgtTGTTCTA
>TU796451
TTTCTGACTTCCGAGCAAACGAGACAAGATGGGTCATCAGCAGCTCTATTGGAGTCATCCTAGAAAATTCGGTCAGGGATCCCGATCCTGCCGGGTATGCTCGAACAGACACGGTTTGATCCGTAAATACGGGCTCAACATGTGCCGCCAGTGCTTCAGGCAGTACGCGAACGACATCGGCTTTGTTAAGCTGGACTAAATGCATTGGATGCTGAAGGTTCCCCAGGAGGTCAAACCAACTGGGAACGGGATGATCCagcaataaaaataaatgttttctgtTGTTCTACATATTGGTCTTGTCGTATGTTGAAGTTTTTGCATGATATGCAAACTGATTTCCATACTTTACTTTTTTTACTCTCTTGAGAGCTAAATACTGAAGGTTTTTAAGCCTATAACCAGATTGTCAAGTGCTATCAAAGTTTAATTTTGATATCTTGCTGCTGGTATTGACATAATGTTCTGGTAGTACTttgaaacatttctaaaaactcaAAAGGGGCTGCTGCAAGTAATCACTTCTAGATTTGTGTACCAGCACTTGTTAAATGATGTCATCTGACAGGTTTAAAACGAATGCGTACGTCTCATTCTGGTTTGGAAAACTGAAATGCATGTTTACTGGTTGGTGTGGAAAGTGCAACTGATCCTGGTAGGTAGCAAATGACTGCATGATACTCGGGGAAAATCGCACCCTCTCGTCCTTGCCACAATGAATGGGTGTGTCCCAATATCGCCTGAATTGtacacaggagacagacagaggaggatgCGAGATGTCTTACTGTTTATGGTTCAATAaaagtcaatgaactaagtagaCTAGACCCAGCTGCTAATGGTGTCTATTGGAGACCCACCCTGTTAAGTTGACTGGTACTGAGACTTTTTTTTTCAACGTTAAACGGCCTAAGTGAGCAATCTTCATTTAGCCACTATCTTTGCTGTTGACTACTCACACAACGAAAAGCATTGGGTAGATAATTTCCACACACCAGTAATTTAGTTTCAAAGGTTAAGGGTACACTGGCAGGAAAGAGAATTGGGACATAACCTAGTTATTTCAATGGGATGGATACAGTCAATGAATTATCAATACAGATTGACCATGTCATTCATAGTGAATGTGATAACCATTTATTTTTTGCAAAATAACTAGCCTAATCTCAGGATAGAAGCATAGAATGTAAGAACCTGCGTAAAGGATGTAAACTTGACATTCACTGATATACTTTTGTGCGCTATTACACTGCCTCAGCTGCATTACAAAATGTATAGTTCTGAAGCAATTTGATTATATGAGACTAGGTTTATGTTCAACTACATTGTCGTTATCTCTGGTTTGAAGTAGGTGACTTTTGGCCCACTAGATGGCAGAGAAGTGCTACAAAAAATGTGCTGTACAGAAAGGTAATCGACACACTAGCCTATACTGAAGTTACTATTCCACATTCTTCATGACCCATCACACGTCAAAATgttaaccccttaccttcacctGCATTTAATGAAAGAGAACTCCAGTCATTTAGAAAAGTGCTGTATTGAAGTTCTCCATTTCCCCTGGCTTGGGATCAGGCCCCGATAGGAGAGGCAGCAGTGACGTTTCAGGCTAGTTTGATGAGGAGCTGCTCTTTCTTCTCTGTGACACTAGAACAATGATGAGATTTACATCCTACCCGAAAGAGGTAcaaagggagagagtgtgtgtgtaatagcaGTAACTTCTCTCCATTTATGGAAGCGGAATAAAGGTACGGCAGGCTGAAGGTGCGCGTTCCCGATTAACATGCATGAGTGCCTACATACATAC

Function

NR:

description
ribosomal protein S29, partial

GO:

id name namespace
GO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0048821 erythrocyte development biological_process
GO:0006412 translation biological_process
GO:0001525 angiogenesis biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0001570 vasculogenesis biological_process
GO:0009790 embryo development biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612450.2 False 356 mRNA 0.49 3 34553792 34556069
TU796451 True 1816 lncRNA 0.41 3 34553859 34557596

Neighbor

gene id symbol gene type direction distance location
LOC110529842 LOC106571600 coding upstream 166756 34374736 ~ 34387036 (+)
LOC110529847 LOC106571593 coding upstream 335113 34178297 ~ 34218679 (+)
LOC110529844 hs90a coding upstream 376183 34167070 ~ 34177609 (+)
LOC110529845 LOC106571588 coding upstream 387078 34158968 ~ 34166714 (+)
LOC110529838 LOC106571596 coding upstream 598597 33936526 ~ 33955195 (+)
LOC110529233 LOC106571582 coding downstream 243246 34799315 ~ 35163860 (+)
LOC100653435 fkbp3 coding downstream 738958 35295027 ~ 35318460 (+)
LOC110529852 arf6 coding downstream 780910 35336979 ~ 35340123 (+)
LOC110529853 LOC106571579 coding downstream 812633 35368702 ~ 35385937 (+)
LOC110529856 LOC106571576 coding downstream 898368 35454437 ~ 35462086 (+)
G699894 NA non-coding upstream 26597 34525591 ~ 34527195 (+)
G699890 NA non-coding upstream 28389 34517276 ~ 34525403 (+)
G699895 NA non-coding upstream 45001 34507185 ~ 34508791 (+)
G699878 NA non-coding upstream 153974 34398665 ~ 34399818 (+)
G699725 NA non-coding upstream 159894 34393081 ~ 34393898 (+)
G699960 NA non-coding downstream 55805 34611874 ~ 34612206 (+)
G700036 LOC107756720 non-coding downstream 81905 34637974 ~ 34638200 (+)
G700040 NA non-coding downstream 88334 34644403 ~ 34644615 (+)
G700054 NA non-coding downstream 96248 34652317 ~ 34652533 (+)
G700072 NA non-coding downstream 110352 34666421 ~ 34666849 (+)
G699605 NA other upstream 425491 34127593 ~ 34128301 (+)
G694036 NA other upstream 4761045 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 5615519 28930668 ~ 28939888 (+)
G693207 NA other upstream 5848040 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 5995419 28495104 ~ 28605625 (+)
G700685 NA other downstream 1057095 35613164 ~ 35614666 (+)
G700864 NA other downstream 1347980 35904049 ~ 35904698 (+)
G702415 NA other downstream 2144369 36700438 ~ 36700739 (+)
G702687 NA other downstream 2502276 37058345 ~ 37059223 (+)

Expression


Co-expression Network