LOC110529233 (LOC106571582)


Basic Information

Item Value
gene id LOC110529233
gene name LOC106571582
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 34799315 ~ 35163860 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985374.1
GGACTTCTCGCCTTTGAGTGCTGGAAATGTTGAGATTAACGTAAAGGATGGACCTAATAATTTCTGTTTTGGGGCTCCTGACGCTGTCTCTGGAGGGCATCCGTTGCCAAGGAGTGTACGCACCCCCTACGGTCCGCATCGTGCATTCGGGCCACGCGTGTAACGTGGAGGAAGAACGTCACACAGAGAGGGTGTACACCATCCGGGAGGGAGAGACCCTGGAACTCACCTGTCTGGTCACAGGACACCCACGGCCACAGATCCGATGGACCAAGACAGCAGGCAGCGTGTCGGATCGCTTCCAGGACTCCAGCGTGTTTAACGAGACGCTGCACATCTCCAAGATCCAGAGACACCAGGGAGGACGCTACTACTGCAAGGCTGAGAATGGCCTGGGCTCCCCGGCCATCAAGTCCATACGGGTCGACGTCTACTacctGGATGACCCTTTAGTGACGGTGCACCAGAGTGTAGGAGAGGCTAAAGAACAGTTTTATTACGAGAGGACAGTGTTCCTACGCTGCGTGGCCAACTCCAACCCCCCAGTCCGCTACAGCTGGCACCGCGGACGAGACGTCCTCTCACAAGGCTCCGACAAGGGAGTGGAGATCTACGAACCATTCTTCACACAGGGGGAGACGAAAATCTTGAAGCTGAAGAACCTTCGTCCTCAGGACTACGCCAACTACAGCTGCATCGCTTCTGTTAGGAACGTCTGTGGCATTTCCGACCGAAACATTGTCTTCAAACTCACCAACAAGACAGCATCTCCCTCCATTAAGCTGCTGGTGGAGGATCCCATCGTGGTGAACCCTGGCCAGACGGTGTCCCTGGTGTGTATCACTACGGGTGGGGAGCCCAACCCCACGCTGAGCTGGGTCAGCAGCTCTGACAGCCTGCCTGAGAAGAGCGTGGTGAAGGGTGGAACACTCACCCTGCCAGCCATCACTTCAGACGAGGCTGGGGTCTACAGCTGTGTAGCCAGTAACAACGTGGGCAACCCAGCCAAGAAGTCTACCACAATAGTGGTCAGAGCGCTGAAGAAGGGGCGTTTCTGGATCACCCCTGACCCCTACCATAATGACGACAACATCCAAATAGGCCGCGAGGTCAAGATCTCCTGCcagGTGGAGGCCACGCCCCCTGAGGAACTGACATTTGGTTGGCTGAAGAACGGCCGCGCCATGCGTAGCTCTGAGCGAATGGTGATCACCCAGACGGACCCTGACATTTCCCCAGGCACCACCAACCTGGACATCATCGACCTGAAGTTCACTGACTTTGGCACCTACACCTGTGTGGCTGCGCTGAAGGGAGGGGGCATACCTGAGATCAGCATAGACgtcaacatctcctccactactgTTCCCCCCAACCTGACAGTGCCACGGGGTAAGAGCCCCCTGGTGGTTCGGGAGGGCGACACGGTGGAGCTCGAGTGTCTGGTTTCAGGGAAGCCCAAGCCCATTATCCTTTGGTCTCGGGCCGATAAAGAGGCGCCCATGCCGGATGGGAGCCTGCAGGCTGAGAGCTACGACGGGGTGCTGCGGATCGTCAACGTGTCCAGAGAGATGACCGGCTCCTACCGCTGCCAGACCAGCCAGTTCAACGGGTTTAATGTGAAGCCCAGGGAAGCTGTGGTGGAGCTGATCGTACAATACCCTCCGTCGGTGGAGCCTGTGTTGTTAGAGATGCGTCAGGGCCTGGGCCGGCCAGTGGCAATGAACTGCCGGGTCCTGCGTGCCCACCCTTCCCGGGTGTTGCGCTATGAGTGGCGGCTGGGGAACCGCCTGCTCCACGCTGGACATTTCGACCAGAGCGACGAGACAGAGTACACCGTCAAAAGCCTCAACCGCGAGGGCTGGGGGGAGTACACCTGTGATGTCAACAATGAGGCCGGGGCTGGGCGCTGCACCTTCCTGGTCACAGGGAAGGCGTATCCCCCAGAGTTCTACTACGACACGTACAGTCCTCTGTGGCAGAACCGACCTACAGTCTACGGCTTCAAACTGCAGTGGACCCAGATGAATCCCAACACTGTGGACCGCATTGTGGCCTACCGCCTCGGCATACGACAGACGGGGCTCCAGAGGTGGTGGGAGCAGGAGATCCCCGTGGATGGAACCATCACCAAgggagagctgaacacacacaacctgacagagctcatCAAGCCTGCGGCCTACGAGGTGCGCCTCACCCCCATCACACGCTTCGGAGAGGGGGACTCCACCATCAGGATCATCACCTACAGTGCTCCTGTCAACCCTCACCTGAGAGAGTTCCACTGCAGCTTCGAAGAGGAGCCCATCTGCATGTTCACGCAGGACAAGAATGACGACTTTGATTGGACGAGACACAGTGCAGCCACCCGTGACACCAAGTACACGCCCAACACTGGGCCTAGCGACGACCGCAGCGGATCCAAACAGGGTTTCTACATGTACATCGAGACGTCCCGGCCTCGGAAGGAGGGTGAGGTGGCGAGGCTGGTCAGTCCCTTCTTCAACGTGGTGCCCAAGAACCCATATGGCATCGCCAACCCCCCGGCATACTGCTTCAGTTTCTTCTTCCACATGTACGGCAAACACATTGGGACCCTAAACGCTTTCCTGAGACAGAAGGGTCAGACAGCGGCCGAGGGGCCCGCGTGGTCGCTGAGCGGTAACCAAGGCGACCGCTGGAAACAGGCCAAAGTCAGCATCCACCCAAACGCGTCTTTCCAGGTGGTGCTGGAGGGTATCCGAGGTCCGGGCATCGAGGGGGACATCGCAATCGATGACGTCACCCTTGAGGAGGGAGAGTGTCGAGATCTACCCCCCATTAATCTCAGATCCTCAGCCCCGCCAACGTCCGCCCATATATGGCCGCTGAGTGTCACCTTGGCGATGACCTTCCTGTGGGGTCGAAGGTGACCCTGCCCTGCGTCGTCTGGCGGAGTCGAACGGGTCCGACCTGGCCTCGGCACCGACCTCGACCCTGGCGCCTGTGTTCTTGTACCCTCAGCATCCAATCACCAAAGATTCAAGCAAGGCGGCAGCGAGGTGTTCCAAACACAGACCACCACGAGGGCCCAAAAAATACCACATAAATAGTAATAAAAGAAGATTCGCAATTTTTTTTTAAGAGACAACTTTTACAGAAAATTGCTCCCCAATCGCAGGATTGTGAGCACTTTTACGAGCGCAAAGCAAAGCCAGGTGTTGTGACGCCTGGACTTTAGTGGGAGTGTTCACTATCGCATTGGGATAACTATTTGTAAAGCACAAGGACAATTTTGCCAGTCAATTAGGAAAGTTAAATAGAAAGGTGTGGAGGAATTGAGAAATTGGTGACTTTTTGAAGAACAAAATTATTTTTTCTGGGCTTaacaaaacacatggaatcaaagCTTTTCTGTGTTTTATCTTATCCTCATTGAGTTGCACCTGCTGCGCATCATGGACACTTTTCTCTCTGCCCAGTCACCCTCACCTGACCTCCACACCTTGACATGTCTCTCTCTCGGCTTGGTGCTGTACTGTAGAAAACAGAAACTCGGACAATGTTTAGTTATCCATCCcagttccctctcccctcttgcCCGGTAGCTGCCTAAGTATTTCACAACACTGTGCTCACTAGTCCAAGGTGTCTGAGACCAGGAAGGCATGCACAAGGTATGtggggcagagaggaggagatgggtagTTGAGAGAGTTGAAGAAGGGTAGGTCAGACTGACTGACGTCCAAGGCAATGTGGAAGGCAGTGGCATAGTGGATGAGAAAAGTAGAGGAtagagaccagaggggaaggagtgGAGAGTAGGAGTAtggagaccagaggggaaggagtggagaggaggagtagaggatggaGACCA

Function

NR:

description
MAM domain-containing glycosylphosphatidylinositol anchor protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985374.1 True 3865 mRNA 0.56 18 34799315 35163860

Neighbor

gene id symbol gene type direction distance location
LOC110529849 NA coding upstream 243246 34553792 ~ 34557596 (+)
LOC110529842 LOC106571600 coding upstream 412279 34374736 ~ 34387036 (+)
LOC110529847 LOC106571593 coding upstream 580636 34178297 ~ 34218679 (+)
LOC110529844 hs90a coding upstream 621706 34167070 ~ 34177609 (+)
LOC110529845 LOC106571588 coding upstream 632601 34158968 ~ 34166714 (+)
LOC100653435 fkbp3 coding downstream 131167 35295027 ~ 35318460 (+)
LOC110529852 arf6 coding downstream 173119 35336979 ~ 35340123 (+)
LOC110529853 LOC106571579 coding downstream 204842 35368702 ~ 35385937 (+)
LOC110529856 LOC106571576 coding downstream 290577 35454437 ~ 35462086 (+)
LOC110529857 LOC106571574 coding downstream 310632 35474492 ~ 35484606 (+)
G700134 NA non-coding upstream 10268 34711337 ~ 34789047 (+)
G700129 NA non-coding upstream 91278 34707766 ~ 34708037 (+)
G700072 NA non-coding upstream 132466 34666421 ~ 34666849 (+)
G700054 NA non-coding upstream 146782 34652317 ~ 34652533 (+)
G700040 NA non-coding upstream 154700 34644403 ~ 34644615 (+)
G700457 NA non-coding downstream 5706 35169566 ~ 35169788 (+)
G700469 NA non-coding downstream 24163 35188023 ~ 35188230 (+)
G700471 NA non-coding downstream 25614 35189474 ~ 35189879 (+)
G700492 NA non-coding downstream 60398 35224258 ~ 35303314 (+)
G700559 prpf39 non-coding downstream 143074 35306934 ~ 35312941 (+)
G699605 NA other upstream 671014 34127593 ~ 34128301 (+)
G694036 NA other upstream 5006568 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 5861042 28930668 ~ 28939888 (+)
G693207 NA other upstream 6093563 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 6240942 28495104 ~ 28605625 (+)
G700685 NA other downstream 449304 35613164 ~ 35614666 (+)
G700864 NA other downstream 740189 35904049 ~ 35904698 (+)
G702415 NA other downstream 1536578 36700438 ~ 36700739 (+)
G702687 NA other downstream 1894485 37058345 ~ 37059223 (+)

Expression


Co-expression Network