LOC110529852 (arf6)


Basic Information

Item Value
gene id LOC110529852
gene name arf6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35336979 ~ 35340123 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612456.2
TTAAACCGTACTGTTTTCGTAATAATACCCAACAACTGGCGTCCATTTCAACTATCATACGATCGTTTTGCTGTTGAAGTCTCTCGGTGTGCGCATGCCAAATGGCGTAGTGCATGAGCAATCGAGAGGAAGTGGCGGGTGATCTGGGTCCGCACCTTTTCCGGTAACAGCACCGCCACCGCTTTGACTGAACGACTGTAAGAGAGAGGCAAGAGCGGGGAGAATCAACCTGGGGACCGGGGGTTGCCGCAGTTggagagagagaagagagaggaagaacggAAAGTCGGATGAATCAATTACCTTTTGAGCATTCTAGACCTGGTTGTCCCGGCGAAGATACGACTGTGGGTGATCTTATTTGTCTCCGGTACAATGAACTCCCGAATAGAATCGTTATTTTGAATCCGCCGATTGGAATAAGAGCAAGGGGACAGCCGGCAGACAAGGAGGAAGTCGGAACTACTACGGGCTTTTGAGAGGGCCTACTTTCTTAAACGCAACTATTAGGCTATATTTTTGGTATTTCTTTCTACATTATTGAAAACACCAAGGTATGCACCGGGACCTGAAATTTAGATTCAAATGATATCGGGTTGCTAGGCCAATCGTTTGAATCAAAAGGACTGAATTATAGTGTTGTGGATTATGAAAATATTTCCCCACCCTCTCCCGGCACCTAGACGTCAAATTCTCAACCACTTCAATTTCCCTTTGCACACCTCTCATAGTTCCTAGTTATTTTCCGACAGCTGTTAAGGTAACGGAATATTTGTATCTTTCAGTGAATAATTGTCCATTGCTTGCCCGCCATTCTAGACACAAGAGTATCTGGAACAGTCGTTTGTAACTGCCACCgtctttttaaaaaaaagtatacttGTGTCAACCTACCGCTGATAGACTGTCACGTGGACGTCTGCTGTCAGGCAACCTGCTACCGCAATAGAAACGAAACctgtaactttaaaaaaaaaatcaatttctgCTCTCTTGAAATCATAGGGaagcaatttagattttttttctaaggAAGTGGATGTTCATGCACAGCCTACAATATGGGGAAAATGCTCTCAAAGATCTTTGGCAACAAGGAGATGAGGATATTGATGCTTGGACTTGATGCTGCTGGCAAGACCACCATCCTCTACAAGCTGAAGCTGGGCCAGTCTGTCACCACCATTCCCACTGTTGGCTTCAACGTTGAGACGGTAACCTACAAAAACGTGAAGTTCAACGTGTGGGACGTCGGGGGCCAGGACAAGATCCGGCCGCTGTGGAGGCACTACTACACCGGCACCCAGGGTCTCATCTTCGTGGTGGACTGTGCCGACAGGGACCGGATAGACGAGGCCCGCCAGGAGCTCCACCGGATCATCAACGACCGGGAGATGCGAGACGCCATCATCCTGATCTTCGCCAATAAGCAGGACCTGCCCGACGCCATGAAGCCCCACGAGATCCAGGAGAAGCTGGGCCTGACCCGAATCAGGGATAGGAATTGGTACGTTCAGCCATCGTGTGCTACCACCGGTGATGGACTATACGAGGGTCTGACCTGGCTCACCTCCAATTACAAGTCTTAATGTTCATCACTTCTATGTTCAGCCTGGACTGTTTAGTTACAACAAGCAAAAAAGAAGTGAAATGAACAAGAGATGGGAAAAAAATTACAAGCTGAGGCAATTAATGAATAATATGACTTCTCAGATGATTAAATGAAAAGTTTGATTCTACTTTTTTTCTTTTGATAATGACTTCCCTATAACCCACATTTTCTTTATAAACAAAAATACTATTGTTTTGGCTGGCTTTTCTTTCATACCTTTTCCCGCCTTGGCTCTGTAATATACTTCGCTCAAGTTCTTGTCACTCAATACTTTACTTTCAGAAGCTTTGAAAGATGTGTATTCAACAACAATCTATTGTATGATGTTTTGGGGGATGGCAGGGATTCTATAGATACATTAGACAGCCTTTTCATACAGTATTCTCATGTCCCAACTTCCACCCAAAAGATGGGAAATGCCCCTTTTTGAGGATGTTACCCATTCATATCtgtgctggaaacaaaggggcAGCATCAGCATATCAGTTCAACTGccaccatgttttttttttttaagaattaaGATGGTGTATTATGGACATGTAAGGACCTAATGAAGAAGTACTTTTTTCACTGTTGATTGATTGTAAAAAATAtcaaaaaaatatcccaaaaatTGCTGAGATTGAAGAAAATGTGTTTCTACGTAACTCCTTAAACAGTGATTCCATCCATGATGTCTGCTAGGGAAGTTTTCTAAAAAGACACTATATGGATGCTGGGATATATGGAAACTGACATGGATGGATATTGTTGTATTTTTGTTCTGTTTTCGGATCAGAATCTTTTACCACTGATCTCGTTTTGCCTCTTCTTCCAAGCGCTTCCATTTGCAGTTCTGGCTGGCTTTTGCGAAGCCCTGAGTTTATAGGTGCACCAACAGACTGACAGCATGGCGGAAAGCACACTCATAGCTGAGTCTGCACTGTAGGTGGGGGGGACTACCCTATCCATGAGAggatgggaagacacatactatAGGCCCCTTGACTAAAAGTGCACTCTTGAATGACTCTTGGACCCCAGTAAGTTTActtttcaaccccccccccccaccaccaccataccaCTTCAATGGTGCTCTGCTCTCCAGTAACTGGGGCCTTTGCGCTGCTCATTCACATCAGCTGTACAGCTCGTTTCAGGCAAGACTGTACTTTCTGGTCAGTATAGATAAAtgctttgttttattttttttgttcaatTTGCTATGCTGACTAAATAATAAAGATATCCAGATCAACATGGAAGTGGAGCTTTTTCAATATGATGCCTGCAACACAAGTTGGTTAACATGTACATGCTTAAACTATTTGAATGTCACGAAAGAGGAAGTAAAATTTGGCTGTTAAAAAA
>XM_021612454.2
ATAATACCCAACAACTGGCGTCCATTTCAACTATCATACGATCGTTTTGCTGTTGAAGTCTCTCGGTGTGCGCATGCCAAATGGCGTAGTGCATGAGCAATCGAGAGGAAGTGGCGGGTGATCTGGGTCCGCACCTTTTCCGGTAACAGCACCGCCACCGCTTTGACTGAACGACTGTAAGAGAGAGGCAAGAGCGGGGAGAATCAACCTGGGGACCGGGGGTTGCCGCAGTTGTAGggagagagagaagagagaggaagaacggAAAGTCGGATGAATCAATTACCTTTTGAGCATTCTAGACCTGGTTGTCCCGGCGAAGATACGACTGTGGGTGATCTTATTTGTCTCCGGTACAATGAACTCCCGAATAGAATCGTTATTTTGAATCCGCCGATTGGAATAAGAGCAAGGGGACAGCCGGCAGACAAGGAGGAAGTCGGAACTACTACGGGCTTTTGAGAGGGCCTACTTTCTTAAACGCAACTATTAGGCTATATTTTTGGTATTTCTTTCTACATTATTGAAAACACCAAGGTATGCACCGGGACCTGAAATTTAGATTCAAATGATATCGGGTTGCTAGGCCAATCGTTTGAATCAAAAGGACTGAATTATAGTGTTGTGGATTATGAAAATATTTCCCCACCCTCTCCCGGCACCTAGACGTCAAATTCTCAACCACTTCAATTTCCCTTTGCACACCTCTCATAGTTCCTAGTTATTTTCCGACAGCTGTTAAGGTAACGGAATATTTGTATCTTTCAGTGAATAATTGTCCATTGCTTGCCCGCCATTCTAGACACAAGAGTATCTGGAACAGTCGTTTGTAACTGCCACCgtctttttaaaaaaaagtatacttGTGTCAACCTACCGCTGATAGACTGTCACGTGGACGTCTGCTGTCAGGCAACCTGCTACCGCAATAGAAACGAAACctgtaactttaaaaaaaaaatcaatttctgCTCTCTTGAAATCATAGGGaagcaatttagattttttttctaaggAAGTGGATGTTCATGCACAGCCTACAATATGGGGAAAATGCTCTCAAAGATCTTTGGCAACAAGGAGATGAGGATATTGATGCTTGGACTTGATGCTGCTGGCAAGACCACCATCCTCTACAAGCTGAAGCTGGGCCAGTCTGTCACCACCATTCCCACTGTTGGCTTCAACGTTGAGACGGTAACCTACAAAAACGTGAAGTTCAACGTGTGGGACGTCGGGGGCCAGGACAAGATCCGGCCGCTGTGGAGGCACTACTACACCGGCACCCAGGGTCTCATCTTCGTGGTGGACTGTGCCGACAGGGACCGGATAGACGAGGCCCGCCAGGAGCTCCACCGGATCATCAACGACCGGGAGATGCGAGACGCCATCATCCTGATCTTCGCCAATAAGCAGGACCTGCCCGACGCCATGAAGCCCCACGAGATCCAGGAGAAGCTGGGCCTGACCCGAATCAGGGATAGGAATTGGTACGTTCAGCCATCGTGTGCTACCACCGGTGATGGACTATACGAGGGTCTGACCTGGCTCACCTCCAATTACAAGTCTTAATGTTCATCACTTCTATGTTCAGCCTGGACTGTTTAGTTACAACAAGCAAAAAAGAAGTGAAATGAACAAGAGATGGGAAAAAAATTACAAGCTGAGGCAATTAATGAATAATATGACTTCTCAGATGATTAAATGAAAAGTTTGATTCTACTTTTTTTCTTTTGATAATGACTTCCCTATAACCCACATTTTCTTTATAAACAAAAATACTATTGTTTTGGCTGGCTTTTCTTTCATACCTTTTCCCGCCTTGGCTCTGTAATATACTTCGCTCAAGTTCTTGTCACTCAATACTTTACTTTCAGAAGCTTTGAAAGATGTGTATTCAACAACAATCTATTGTATGATGTTTTGGGGGATGGCAGGGATTCTATAGATACATTAGACAGCCTTTTCATACAGTATTCTCATGTCCCAACTTCCACCCAAAAGATGGGAAATGCCCCTTTTTGAGGATGTTACCCATTCATATCtgtgctggaaacaaaggggcAGCATCAGCATATCAGTTCAACTGccaccatgttttttttttttaagaattaaGATGGTGTATTATGGACATGTAAGGACCTAATGAAGAAGTACTTTTTTCACTGTTGATTGATTGTAAAAAATAtcaaaaaaatatcccaaaaatTGCTGAGATTGAAGAAAATGTGTTTCTACGTAACTCCTTAAACAGTGATTCCATCCATGATGTCTGCTAGGGAAGTTTTCTAAAAAGACACTATATGGATGCTGGGATATATGGAAACTGACATGGATGGATATTGTTGTATTTTTGTTCTGTTTTCGGATCAGAATCTTTTACCACTGATCTCGTTTTGCCTCTTCTTCCAAGCGCTTCCATTTGCAGTTCTGGCTGGCTTTTGCGAAGCCCTGAGTTTATAGGTGCACCAACAGACTGACAGCATGGCGGAAAGCACACTCATAGCTGAGTCTGCACTGTAGGTGGGGGGGACTACCCTATCCATGAGAggatgggaagacacatactatAGGCCCCTTGACTAAAAGTGCACTCTTGAATGACTCTTGGACCCCAGTAAGTTTActtttcaaccccccccccccaccaccaccataccaCTTCAATGGTGCTCTGCTCTCCAGTAACTGGGGCCTTTGCGCTGCTCATTCACATCAGCTGTACAGCTCGTTTCAGGCAAGACTGTACTTTCTGGTCAGTATAGATAAAtgctttgttttattttttttgttcaatTTGCTATGCTGACTAAATAATAAAGATATCCAGATCAACATGGAAGTGGAGCTTTTTCAATATGATGCCTGCAACACAAGTTGGTTAACATGTACATGCTTAAACTATTTGAATGTCACGAAAGAGGAAGTAAAATTTGGCTGTTAAAAAA
>XM_021612455.2
TAATACCCAACAACTGGCGTCCATTTCAACTATCATACGATCGTTTTGCTGTTGAAGTCTCTCGGTGTGCGCATGCCAAATGGCGTAGTGCATGAGCAATCGAGAGGAAGTGGCGGGTGATCTGGGTCCGCACCTTTTCCGGTAACAGCACCGCCACCGCTTTGACTGAACGACTGTAAGAGAGAGGCAAGAGCGGGGAGAATCAACCTGGGGACCGGGGGTTGCCGCAGTTGTAGggagagagagaagagagaggaagaacggAAAGTCGGATGAATCAATTACCTTTTGAGCATTCTAGACCTGGTTGTCCCGGCGAAGATACGACTGTGGGTGATCTTATTTGTCTCCGGTACAATGAACTCCCGAATAGAATCGTTATTTTGAATCCGCCGATTGGAATAAGAGCAAGGGGACAGCCGGCAGACAAGGAGGAAGTCGGAACTACTACGGGCTTTTGAGAGGGCCTACTTTCTTAAACGCAACTATTAGGCTATATTTTTGGTATTTCTTTCTACATTATTGAAAACACCAAGGTATGCACCGGGACCTGAAATTTAGATTCAAATGATATCGGGTTGCTAGGCCAATCGTTTGAATCAAAAGGACTGAATTATAGTGTTGTGGATTATGAAAATATTTCCCCACCCTCTCCCGGCACCTAGACGTCAAATTCTCAACCACTTCAATTTCCCTTTGCACACCTCTCATAGTTCCTAGTTATTTTCCGACAGCTGTTAAGGTAACGGAATATTTGTATCTTTCAGTGAATAATTGTCCATTGCTTGCCCGCCATTCTAGACACAAGAGTATCTGGAACAGTCGTTTGTAACTGCCACCgtctttttaaaaaaaagtatacttGTGTCAACCTACCGCTGATAGACTGTCACGTGGACGTCTGCTGTCAGGCgattttttttctaaggAAGTGGATGTTCATGCACAGCCTACAATATGGGGAAAATGCTCTCAAAGATCTTTGGCAACAAGGAGATGAGGATATTGATGCTTGGACTTGATGCTGCTGGCAAGACCACCATCCTCTACAAGCTGAAGCTGGGCCAGTCTGTCACCACCATTCCCACTGTTGGCTTCAACGTTGAGACGGTAACCTACAAAAACGTGAAGTTCAACGTGTGGGACGTCGGGGGCCAGGACAAGATCCGGCCGCTGTGGAGGCACTACTACACCGGCACCCAGGGTCTCATCTTCGTGGTGGACTGTGCCGACAGGGACCGGATAGACGAGGCCCGCCAGGAGCTCCACCGGATCATCAACGACCGGGAGATGCGAGACGCCATCATCCTGATCTTCGCCAATAAGCAGGACCTGCCCGACGCCATGAAGCCCCACGAGATCCAGGAGAAGCTGGGCCTGACCCGAATCAGGGATAGGAATTGGTACGTTCAGCCATCGTGTGCTACCACCGGTGATGGACTATACGAGGGTCTGACCTGGCTCACCTCCAATTACAAGTCTTAATGTTCATCACTTCTATGTTCAGCCTGGACTGTTTAGTTACAACAAGCAAAAAAGAAGTGAAATGAACAAGAGATGGGAAAAAAATTACAAGCTGAGGCAATTAATGAATAATATGACTTCTCAGATGATTAAATGAAAAGTTTGATTCTACTTTTTTTCTTTTGATAATGACTTCCCTATAACCCACATTTTCTTTATAAACAAAAATACTATTGTTTTGGCTGGCTTTTCTTTCATACCTTTTCCCGCCTTGGCTCTGTAATATACTTCGCTCAAGTTCTTGTCACTCAATACTTTACTTTCAGAAGCTTTGAAAGATGTGTATTCAACAACAATCTATTGTATGATGTTTTGGGGGATGGCAGGGATTCTATAGATACATTAGACAGCCTTTTCATACAGTATTCTCATGTCCCAACTTCCACCCAAAAGATGGGAAATGCCCCTTTTTGAGGATGTTACCCATTCATATCtgtgctggaaacaaaggggcAGCATCAGCATATCAGTTCAACTGccaccatgttttttttttttaagaattaaGATGGTGTATTATGGACATGTAAGGACCTAATGAAGAAGTACTTTTTTCACTGTTGATTGATTGTAAAAAATAtcaaaaaaatatcccaaaaatTGCTGAGATTGAAGAAAATGTGTTTCTACGTAACTCCTTAAACAGTGATTCCATCCATGATGTCTGCTAGGGAAGTTTTCTAAAAAGACACTATATGGATGCTGGGATATATGGAAACTGACATGGATGGATATTGTTGTATTTTTGTTCTGTTTTCGGATCAGAATCTTTTACCACTGATCTCGTTTTGCCTCTTCTTCCAAGCGCTTCCATTTGCAGTTCTGGCTGGCTTTTGCGAAGCCCTGAGTTTATAGGTGCACCAACAGACTGACAGCATGGCGGAAAGCACACTCATAGCTGAGTCTGCACTGTAGGTGGGGGGGACTACCCTATCCATGAGAggatgggaagacacatactatAGGCCCCTTGACTAAAAGTGCACTCTTGAATGACTCTTGGACCCCAGTAAGTTTActtttcaaccccccccccccaccaccaccataccaCTTCAATGGTGCTCTGCTCTCCAGTAACTGGGGCCTTTGCGCTGCTCATTCACATCAGCTGTACAGCTCGTTTCAGGCAAGACTGTACTTTCTGGTCAGTATAGATAAAtgctttgttttattttttttgttcaatTTGCTATGCTGACTAAATAATAAAGATATCCAGATCAACATGGAAGTGGAGCTTTTTCAATATGATGCCTGCAACACAAGTTGGTTAACATGTACATGCTTAAACTATTTGAATGTCACGAAAGAGGAAGTAAAATTTGGCTGTTAAAAAA

Function

symbol description
arf6 Enables GDP binding activity; GTP binding activity; and thioesterase binding activity. Involved in several processes, including positive regulation of actin filament polymerization; regulation of Rac protein signal transduction; and ruffle assembly. Located in several cellular components, including Flemming body; cytoplasmic vesicle; and filopodium membrane.

NR:

description
ADP-ribosylation factor 6 isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0031529 ruffle organization biological_process
GO:0035020 regulation of Rac protein signal transduction biological_process
GO:0051489 regulation of filopodium assembly biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0060998 regulation of dendritic spine development biological_process
GO:0030838 positive regulation of actin filament polymerization biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0001889 liver development biological_process
GO:0033028 myeloid cell apoptotic process biological_process
GO:0090162 establishment of epithelial cell polarity biological_process
GO:0030866 cortical actin cytoskeleton organization biological_process
GO:0034394 protein localization to cell surface biological_process
GO:0097284 hepatocyte apoptotic process biological_process
GO:0001726 ruffle cellular_component
GO:0030139 endocytic vesicle cellular_component
GO:0031527 filopodium membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005938 cell cortex cellular_component
GO:0010008 endosome membrane cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0031996 thioesterase binding molecular_function

KEGG:

id description
K07941 ARF6; ADP-ribosylation factor 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612456.2 False 2968 mRNA 0.43 2 35336979 35340123
XM_021612454.2 False 2951 mRNA 0.44 2 35337000 35340123
XM_021612455.2 True 2864 mRNA 0.44 3 35337001 35340123

Neighbor

gene id symbol gene type direction distance location
LOC100653435 fkbp3 coding upstream 18519 35295027 ~ 35318460 (+)
LOC110529233 LOC106571582 coding upstream 173119 34799315 ~ 35163860 (+)
LOC110529849 NA coding upstream 780910 34553792 ~ 34557596 (+)
LOC110529842 LOC106571600 coding upstream 949943 34374736 ~ 34387036 (+)
LOC110529847 LOC106571593 coding upstream 1118300 34178297 ~ 34218679 (+)
LOC110529853 LOC106571579 coding downstream 28579 35368702 ~ 35385937 (+)
LOC110529856 LOC106571576 coding downstream 114314 35454437 ~ 35462086 (+)
LOC110529857 LOC106571574 coding downstream 134369 35474492 ~ 35484606 (+)
LOC110529858 LOC106571724 coding downstream 149131 35489254 ~ 35502659 (+)
cipcb LOC106571573 coding downstream 162743 35502866 ~ 35505831 (+)
G700559 prpf39 non-coding upstream 24038 35306934 ~ 35312941 (+)
G700492 NA non-coding upstream 33665 35224258 ~ 35303314 (+)
G700471 NA non-coding upstream 147100 35189474 ~ 35189879 (+)
G700469 NA non-coding upstream 148749 35188023 ~ 35188230 (+)
G700457 NA non-coding upstream 167191 35169566 ~ 35169788 (+)
G700609 NA non-coding downstream 90781 35430904 ~ 35431123 (+)
G700617 NA non-coding downstream 111295 35451418 ~ 35451621 (+)
G700651 NA non-coding downstream 212999 35553122 ~ 35608232 (+)
G700667 NA non-coding downstream 249588 35589711 ~ 35640025 (+)
G700687 NA non-coding downstream 273321 35613444 ~ 35618274 (+)
G699605 NA other upstream 1208678 34127593 ~ 34128301 (+)
G694036 NA other upstream 5544232 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 6398706 28930668 ~ 28939888 (+)
G693207 NA other upstream 6631227 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 6778606 28495104 ~ 28605625 (+)
G700685 NA other downstream 273041 35613164 ~ 35614666 (+)
G700864 NA other downstream 563926 35904049 ~ 35904698 (+)
G702415 NA other downstream 1360315 36700438 ~ 36700739 (+)
G702687 NA other downstream 1718222 37058345 ~ 37059223 (+)

Expression


Co-expression Network