LOC110529858 (LOC106571724)


Basic Information

Item Value
gene id LOC110529858
gene name LOC106571724
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35489254 ~ 35502659 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612465.2
CAAGACATAACATTATGGGACACTGGAACGCTTTGATAAGCACCTTAGTAAAAGTAACCTAATTGAATTTCACTAATCACCTTCAGATTAGGCTATGTCCAAGCGCTGCATTATAGTATTTCACAAAAAGTCAGTCCTACTCTGACTGCTCTTCACGGACAGCGATAGTCATCCAAGGTTCGCTCAATCTGTTCTCAATCGCGTCATTTCTACAGTGGTCGATAATACGCGCATCTCTTTACCTTGACTCAAGACTGTCAATGCCGACAGCTACTCAGATTCAGTGAAATTGTTTTGTAAAAATTTGTCTGCAAAAAAAATGAACACTTTTTCCTTCAAGATGCACGTTCTCGTCGGCGTCTCGCAGATTTTGGCAACTCTTATGTTCCACTTGGCACCTACTCAGACTTCTCACTCCCCAGTGGAACCACACTCTAGAGTGATGCTGTTCCGGGAGGTTTTGGGGCGGAGTTTGTGTCGTTCGATGGAGCGATTGGTGGAGGTGGAGCAGGAGTACCCTGGAGGGGTGGAATATATTTTTAGCCCTGCCTGCGTGCCCCTGTGGCGATGCGCTGGTTGCTGTGGAGACGAGAACCTGGAGTGTCACCCCACCCTCACACGTAACGTCACCATGCAGTTGATGAGGATAACTCCGACTGAGAGGACAGGGCAGTACGTGGAGCTGACGTTTGTGGAGCATCAGACCTGTGAGTGCAGACACAGGAAGATGCATTTGAATGAGAGCAGTCCCAGAGTCAGGATCCATCCCAGGAGGAGGAAGCACAGAAAAAGATCCAAAGACTGTGGCAAGTGTCAGCATCCACACAGTTAGTAGGATACTTGGATCCCCGTCCTTCCAGTCCGCTGTCCAATCACCACTCAGCTGTGGAATGAAGACAGCATAGGGGGAAGCCACACACCTACTTGTTTACCCCCCAGATACACAAATGCCTCAACTCATTGTCCATGAAAATACACTAACCCCAAACTGCAATTTATACCAGAGTAATAACAACTTTAGTTTTCTGATACTGGATACCCAATATCAGCCTTGAGAATACTTTTACGCGGATGATTTCCCACTGTAATAGCAGATACAGTAGCTCCACCTCGTGGACAGAGGGGTGGCAGGACAGGAGATAAGCAATCGCCAAGGGACAAAGGGATTAAGCCGCACCTTACAGGCAGTGTTCTTGAAAAGCAGTAGGCCAATAAATGGATTTAGCTTCAATCGAGTATGGAACAACAACAAAGAAGGCTAAAACAGATGCAGAATGGGTGTGGACTGAACTCGGGAGAGAACGGACACCTTCACAGTATACCTCTCCCCTTGTTGATCGCATTGCAGTAGAGAATGGTCTGAACTGAAGTGCATGATCAAAGGGAGGGATgaacatactgtaggttatatcGAGACCTGTAATGTTTATATCTCTTAACTTTCATCAGACAGAGAAGAATAACAAATCCACATGGATTCCGCTGTATTATATATGAAAATGAAATATATTCAAATGTAAATAAGTTTATAGCGATCACTGTATCAGAAACGGCATCTGGGAATTACATTTTGAGTTGTTCATGTTAGAATTACATCTTTGTCTTGGGAGTGTGCTGTGTTCATTTACTGAGTGTCATGAtgtgtctgactgactctctTGAAAAGGAGTAAATATAAGATTTTCTTCAGGTGGGTCGTttcgattgtgtgtgtgtgtcctgatgCCGCCCCTTGAAAACGAATATGTCATGTAACAGCACACTATGGTCTCACATCACGGATTCCCCATACAGGCGAAATGCCAGGTTTCCAATCGTTACCACAAACACAAAGTCAAAATTAGCTATATCGTGAaaattaatgaaaacaaaaatttTCTTTATGGTCAGGGTTAGtcctaaggttagggttaggcataaggttagcagtgcggttaggtttatggttacaTTTCTAACAAATTGTAGAAATGGGCGGGGTTTTTCCTTTgtagctgtggtaactagtgacggcCGAAATGCCGGTACTGTGCAACCTAAGATGTTTATAACTAAAcagaccacagcctgtcgtttcaaACGGGAACAAATTGGACATAGTGGGAAGAACAAGCAAGGATGTGGCCAGAGCCGAGCACAATGATATTGGCTCGTTCTAGAACAtatctgcatatttccgttaggggaCGCCTCCTTTGTAAATTCTCCTTTGCACTCCTTTTAAACAACGCAATTTGTATcataaactgttttttttttttttaaataaaggctaaataaagtctactaa

Function

NR:

description
vascular endothelial growth factor A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612465.2 True 2290 mRNA 0.44 7 35489254 35502659

Neighbor

gene id symbol gene type direction distance location
LOC110529857 LOC106571574 coding upstream 4648 35474492 ~ 35484606 (+)
LOC110529856 LOC106571576 coding upstream 27168 35454437 ~ 35462086 (+)
LOC110529853 LOC106571579 coding upstream 103317 35368702 ~ 35385937 (+)
LOC110529852 arf6 coding upstream 149131 35336979 ~ 35340123 (+)
LOC100653435 fkbp3 coding upstream 170794 35295027 ~ 35318460 (+)
cipcb LOC106571573 coding downstream 207 35502866 ~ 35505831 (+)
znf410 zn410 coding downstream 12275 35514934 ~ 35538337 (+)
LOC110529863 LOC106571570 coding downstream 71647 35574306 ~ 35596404 (+)
LOC110529234 LOC106571562 coding downstream 352301 35854960 ~ 35901652 (+)
LOC110529869 LOC106571559 coding downstream 433748 35936407 ~ 36051280 (+)
G700617 NA non-coding upstream 37633 35451418 ~ 35451621 (+)
G700609 NA non-coding upstream 58131 35430904 ~ 35431123 (+)
G700559 prpf39 non-coding upstream 176313 35306934 ~ 35312941 (+)
G700492 NA non-coding upstream 185940 35224258 ~ 35303314 (+)
G700471 NA non-coding upstream 299375 35189474 ~ 35189879 (+)
G700651 NA non-coding downstream 50463 35553122 ~ 35608232 (+)
G700667 NA non-coding downstream 87052 35589711 ~ 35640025 (+)
G700687 NA non-coding downstream 110785 35613444 ~ 35618274 (+)
G700707 LOC107392296 non-coding downstream 150379 35653038 ~ 35655716 (+)
G700746 NA non-coding downstream 226511 35729170 ~ 35729421 (+)
G699605 NA other upstream 1360953 34127593 ~ 34128301 (+)
G694036 NA other upstream 5696507 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 6550981 28930668 ~ 28939888 (+)
G693207 NA other upstream 6783502 28704850 ~ 28705752 (+)
G700685 NA other downstream 110505 35613164 ~ 35614666 (+)
G700864 NA other downstream 401390 35904049 ~ 35904698 (+)
G702415 NA other downstream 1197779 36700438 ~ 36700739 (+)
G702687 NA other downstream 1555686 37058345 ~ 37059223 (+)
G702817 LOC106571770 other downstream 1746078 37248737 ~ 37249809 (+)

Expression


Co-expression Network