cipcb (LOC106571573)


Basic Information

Item Value
gene id cipcb
gene name LOC106571573
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35502866 ~ 35505831 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612468.2
tacatgtgtcattgttctatctgtggtacAACTCCCATAGTTCACTGTTGAACACAATTTCGTCAGATGGCATACGGGTGAAATATAGTAGTGGGTGGGCTAGACAGCACAAAACATGCTTAGAACACGACGATACAGCCACAAACTTCCAAATATGGATAGGTGAGGTACACAGACTTTAGACGAGAAGATCGTGTCCCATCCGTTTTCTCACTGCCGGGAGAACATTGTTGATCATTCGGAACATTAGCTACTCACTCACTCCCTGTGGTGTTGCTGCACCGTCTCGATCAAGAAAATCGCATCACATCGGATTCTCCTGGAATTCCTCGCTGCATGTGCGCTAGCTGGCAGGAGTGCACCAGAAGCCTAGCCCCGTGTATATGTGTACTACCTTGCCGACTAACGTTACACACTCACACCAGACCGACAGACTGTGGCGGAGAGACTGTGAGCGGACGATAGACCACAAGTTAGGATTGAGCAAGGACACGAAGTTGGGTACATTTGTATCGTTTCAATCATGTCTATGCATTGTTCTGTATTGTAATCGTTGCTAGCTAATACGTCCAAAGGAAAGATGTAACTAGATACGTTGCATTCAGACATGCTAACGTAGTTGGTATAGCTAGCTAGTGGTCTTATGACAATCAAGTAGccaacgttagttagctaacttCAAAATCCAGAAATTGGAGTAGCTAGCAGTTATGCTAAAACTGCAGCTAGCTACTGAACTATAATCCTAGCAGGAGGGACACAGAAACGTCTAGATTCTAACAGAATAGAAAGCGTAGTTCACCCCTAGAACAGTGTTGCACCCCTACAACACGGAAGGAGTTGCAATATATATGTAGTAACGAACCATATAAtaatgcagattttttttttttggggggggggggggtgcatcccAGGTTTCCTATCCATTCTACTACACTGATGTGGGTGTAGTAGTCTGAGTGACTGACAAGACCATTGAAAATAAACTAGATGAGTAGTACCAAGAGGAAAGCAGAAGGGCAATCTAGGACCAGGAAGTCTGGAAGCTCCAGAACAGACTCGGAGAGAGACTCTGGCTTCTCAGATGCCAGCACCATAGACCTGACAGATTCTGAGGACTCATCTCGCACTGTGTCCAAGAGAGAGGCCCAGCGCACTCCATCCGGGTCAGGGTCTCATCCCTCACAGCTAGCTGTGTTGGGGGGGTCCTACTCCAACATGTCCCCCATGATCATGAAAAATGTCCTCCTAAAACAGcctggGAACAACCCTCCCTCTCAGAAGCCATGGGGGTTCAGCCCAGCTGTGGAGATGGTCCAGCAGCCTCAGGTGGACTTCGTCCAGCCCGTTGTCTCCCCTGTGGTCTCCCACTGCACCACATCCAACCCTAAGGAGGCCACTTCCAAACGCCGGCGCCCCAAGAAGTATCTTCCCATCCTCAGGTCCTACCCGAAGATCGCCCCTCACCCTGGAGACAGTTCGAGTTCCTCCGGGGGAGTAAGCTCTTGTTATTTCCCCGCTTCATCCCCCTCTGCCTCTAGCCACCgggaacaccatcacaaccacaGAAACAAACAGCACAGGCACCAGTCTAGAGGTTCTAGCTGTGGTTCTTCTGGTTCCAACACCcccagtctccctcctccctctagctccctgtccccctcttcccagcataggctCACCCCCTCCCTCACAGACTCCAGTGCTTGCAGCAGCCCTGCAAGATCCTCTCTCGTCAGTAGATCAGAGTTCTCCCCAGCCCCGTCCCCTGCCTTAACCGTAACGCCTTCAGACACCCTCACCTCTGAGGTCCCTGAGAAAACCAAGACCCTCTCCCTCCCACAACCCACCATCGCCACAACCAACGACAACAGCTGCCACGATGACAGCAACCACGACCACAATAGCGATGACCATGACATAAAGCGCAAGCGTTTCTGCAACACGTACAACATCCTGTCCAAGTCTGGCCTGCTGGAGATCACCCTGAGTACCAAGGACCTGATTCGTCAGAACCGCAGGACCCAGGTAGACCTGGACCGGCTCAAGGAGCACACCAACCTCTTCCTGCAGGCCCTGCAGACCGGAGATACCAGCATCTGGAGCAAGCTGCAGACCAGCCTCCAGGAAGAGAAGGGCAGTGGGCAGCAGAGCAGCTTAAAGGCAGATACAGATTAGATCTGAACTAAGTAAAAGCAGGGTTTCATCTGTTAGACTGGGCAGAGACTGAGTTGAAGTGGGGGAGGCTGAGGCAGCTAGACTGGCATTACTATGCCCACAATtatcacacagacatacagtgccttgcgaaagtaatcggcccccttgaactt
>XM_021612469.2
tacatgtgtcattgttctatctgtggtacAACTCCCATAGTTCACTGTTGAACACAATTTCGTCAGATGGCATACGGGTGAAATATAGTAGTGGGTGGGCTAGACAGCACAAAACATGCTTAGAACACGACGATACAGCCACAAACTTCCAAATATGGATAGGTGAGGTACACAGACTTTAGACGAGAAGATCGTGTCCCATCCGTTTTCTCACTGCCGGGAGAACATTGTTGATCATTCGGAACATTAGCTACTCACTCACTCCCTGTGGTGTTGCTGCACCGTCTCGATCAAGAAAATCGCATCACATCGGATTCTCCTGGAATTCCTCGCTGCATGTGCGCTAGCTGGCAGGAGTGCACCAGAAGCCTAGCCCCGTGTATATGTGTACTACCTTGCCGACTAACGTTACACACTCACACCAGACCGACAGACTGTGGCGGAGAGACTGTGAGCGGACGATAGACCACAAGTTAGGATTGAGCAAGGACACGAAGTTGGGTTTCCTATCCATTCTACTACACTGATGTGGGTGTAGTAGTCTGAGTGACTGACAAGACCATTGAAAATAAACTAGATGAGTAGTACCAAGAGGAAAGCAGAAGGGCAATCTAGGACCAGGAAGTCTGGAAGCTCCAGAACAGACTCGGAGAGAGACTCTGGCTTCTCAGATGCCAGCACCATAGACCTGACAGATTCTGAGGACTCATCTCGCACTGTGTCCAAGAGAGAGGCCCAGCGCACTCCATCCGGGTCAGGGTCTCATCCCTCACAGCTAGCTGTGTTGGGGGGGTCCTACTCCAACATGTCCCCCATGATCATGAAAAATGTCCTCCTAAAACAGcctggGAACAACCCTCCCTCTCAGAAGCCATGGGGGTTCAGCCCAGCTGTGGAGATGGTCCAGCAGCCTCAGGTGGACTTCGTCCAGCCCGTTGTCTCCCCTGTGGTCTCCCACTGCACCACATCCAACCCTAAGGAGGCCACTTCCAAACGCCGGCGCCCCAAGAAGTATCTTCCCATCCTCAGGTCCTACCCGAAGATCGCCCCTCACCCTGGAGACAGTTCGAGTTCCTCCGGGGGAGTAAGCTCTTGTTATTTCCCCGCTTCATCCCCCTCTGCCTCTAGCCACCgggaacaccatcacaaccacaGAAACAAACAGCACAGGCACCAGTCTAGAGGTTCTAGCTGTGGTTCTTCTGGTTCCAACACCcccagtctccctcctccctctagctccctgtccccctcttcccagcataggctCACCCCCTCCCTCACAGACTCCAGTGCTTGCAGCAGCCCTGCAAGATCCTCTCTCGTCAGTAGATCAGAGTTCTCCCCAGCCCCGTCCCCTGCCTTAACCGTAACGCCTTCAGACACCCTCACCTCTGAGGTCCCTGAGAAAACCAAGACCCTCTCCCTCCCACAACCCACCATCGCCACAACCAACGACAACAGCTGCCACGATGACAGCAACCACGACCACAATAGCGATGACCATGACATAAAGCGCAAGCGTTTCTGCAACACGTACAACATCCTGTCCAAGTCTGGCCTGCTGGAGATCACCCTGAGTACCAAGGACCTGATTCGTCAGAACCGCAGGACCCAGGTAGACCTGGACCGGCTCAAGGAGCACACCAACCTCTTCCTGCAGGCCCTGCAGACCGGAGATACCAGCATCTGGAGCAAGCTGCAGACCAGCCTCCAGGAAGAGAAGGGCAGTGGGCAGCAGAGCAGCTTAAAGGCAGATACAGATTAGATCTGAACTAAGTAAAAGCAGGGTTTCATCTGTTAGACTGGGCAGAGACTGAGTTGAAGTGGGGGAGGCTGAGGCAGCTAGACTGGCATTACTATGCCCACAATtatcacacagacatacagtgccttgcgaaagtaatcggcccccttgaactt

Function

NR:

description
CLOCK-interacting pacemaker-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612468.2 False 2339 mRNA 0.51 3 35502866 35505831
XM_021612469.2 True 1923 mRNA 0.53 4 35502866 35505831

Neighbor

gene id symbol gene type direction distance location
LOC110529858 LOC106571724 coding upstream 207 35489254 ~ 35502659 (+)
LOC110529857 LOC106571574 coding upstream 18260 35474492 ~ 35484606 (+)
LOC110529856 LOC106571576 coding upstream 40780 35454437 ~ 35462086 (+)
LOC110529853 LOC106571579 coding upstream 116929 35368702 ~ 35385937 (+)
LOC110529852 arf6 coding upstream 162743 35336979 ~ 35340123 (+)
znf410 zn410 coding downstream 9103 35514934 ~ 35538337 (+)
LOC110529863 LOC106571570 coding downstream 68475 35574306 ~ 35596404 (+)
LOC110529234 LOC106571562 coding downstream 349129 35854960 ~ 35901652 (+)
LOC110529869 LOC106571559 coding downstream 430576 35936407 ~ 36051280 (+)
LOC118965513 NA coding downstream 959125 36464956 ~ 36467606 (+)
G700617 NA non-coding upstream 51245 35451418 ~ 35451621 (+)
G700609 NA non-coding upstream 71743 35430904 ~ 35431123 (+)
G700559 prpf39 non-coding upstream 189925 35306934 ~ 35312941 (+)
G700492 NA non-coding upstream 199552 35224258 ~ 35303314 (+)
G700471 NA non-coding upstream 312987 35189474 ~ 35189879 (+)
G700651 NA non-coding downstream 47291 35553122 ~ 35608232 (+)
G700667 NA non-coding downstream 83880 35589711 ~ 35640025 (+)
G700687 NA non-coding downstream 107613 35613444 ~ 35618274 (+)
G700707 LOC107392296 non-coding downstream 147207 35653038 ~ 35655716 (+)
G700746 NA non-coding downstream 223339 35729170 ~ 35729421 (+)
G699605 NA other upstream 1374565 34127593 ~ 34128301 (+)
G694036 NA other upstream 5710119 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 6564593 28930668 ~ 28939888 (+)
G693207 NA other upstream 6797114 28704850 ~ 28705752 (+)
G700685 NA other downstream 107333 35613164 ~ 35614666 (+)
G700864 NA other downstream 398218 35904049 ~ 35904698 (+)
G702415 NA other downstream 1194607 36700438 ~ 36700739 (+)
G702687 NA other downstream 1552514 37058345 ~ 37059223 (+)
G702817 LOC106571770 other downstream 1742906 37248737 ~ 37249809 (+)

Expression


Co-expression Network