LOC110529862 (LOC106571571)


Basic Information

Item Value
gene id LOC110529862
gene name LOC106571571
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35553221 ~ 35608497 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985377.1
TGACTTCATCAACGTATAACTGCTAGATAGCTGACTTTATAAATGGCCAGAGGTGTCTGTGTTTAGGGACTGCGGTGTGTGTACTTTGGGCTGAAAGCAATCACAATCTCTTCTACCATGGCAGGGATTCTAGCGAGATCGTTATGGAGCAAAAAGGCACCACTTCAGATGGGTCTCATGTGttattcatcatcatcagtgCCCACCACCAAGCTGTTCATTGACGGCAAGTTTGTAGAGTCCAGCACCTCAGAATGGCTGGACATTCACAACCCTGCCACTAACGAGGTGGTGGGTCGCGTGCCCAAAGCCACCCAGACAGAGATGTTAGCTGCAGTAGAGTCCTGCTCCAGGGCCTACGCCTCCTGGGCCGAGACCTCCATCCTCACCCGCCAGCAGATCTTCCTCCGATACCAGCAGCTCATCAAGGAAAACATTAAAGAGCTAGCCAGGCTGATCACCCTGGAGCAGGGCAAGACTCTGGCTGACGCGGAGGGAGACGTCTTCAGAGGATTGCAGGTGGCAGAGCACGCCTGCAGCATCACCTCCCTGATGCTGGGGGAGACCCTGCCCTCCATCACCAAAGACATGGATACCTACACCTACCGCCTGCCCATCGGGGTGTGTGCTGGTATCGCCCCCTTCAACTTCCCTGCCATGATCCCTCTGTGGATGTTCCCCATGGGCATGGTGTGTGGCAACACCTACCTGATGAAGCCTTCCGAGCGCGTCCCAGGATGCACCATGCTGCTGGCCAGGCTGCTGCAGGACGCAGGGATGCCCGACGGGACCCTGAACATCATTCATGGACAGCACGCTGCCGTGAACTTCATCTGTGACCACCCTGCCATCAAGGCCATCAGCTTCGTGGGCTCCAACCAGGCAGGAGAGTACATCTACGAGAGAGGATCCAAGAATGGCAAGAGAGTGCAGTCCAACATGGGAGCTAAGAACCACGGTGTGGTGATGCCTGACGCAAACAAGGAGAACACTCTGAACCAGCTGGTGGGCGCAGCCTTTGGCGCTGCAGGACAGCGTTGTATGGCTCTCTCAACCGCCATTCTCGTAGGCGAGGCTCGTGAATGGCTCCCAGAGCTGGTGGAGCGCTCCAAAGCCCTGCGCGTCAATGCAGGTGACCAGCCGGGTGCTGACGTGGGTCCTCTGATCTCCCCTGAAGCCAGGGCCCGTGTTGAAAAGTTGATCCAGAGCGGCGTGGACGAGGGAGCTACGCTGCTGCTGGATGGACGCAATGTCCACGTCAAAGGATACGAGAATGGCAACTTTGTAGGGCCCACCATCATCGGCAATGTCACGCCAGCGATGACGTGCTACACGGAGGAGATATTTGGGCCGGTGCTGGTGGTTCTGGAGGCTGACACTCTGGATGAAGCCATCTCCCTGGTCAACAACAACCAGTACGGCAACGGAACCGCCATCTTCACCACCAACGGCGCCACCGCCCGCAAGTACACACACGAGGTGGATGTCGGACAGATTGGTGTGAACGTGCCCATCCCCGTCCCCCTTCCCATGTTCTCCTTCACCGGCTCCAGAGGTTCATTCAGGGGCGACACCAACTTCTACGGCAAACAGGGCATCCAATTCTACACTCAGGTCAAGACGGTTACATCACAGTGGAAGGCCGACGACGCCACCACGAAGAGCCCAGCCGTTACCATGCCGACCATGGGACGCTAAACGGAACGTTCACTTGTTAATGTGGTGTTCTCTACCTGGCACAACGTTCCACATACTGACTGACATGCGTTAACATTCAGAAGGGGTTAGCAGCCAAGGGGTACGAACAACTGATTCGCTGACAACTGATAAGTCTATTAGAGTCATGGAATATGTTTTATACCGAGTGTACTATATGAGAAACGTTTTTGTATTTGCGTTTGACCCTGTTACTGAAATTGCTTCCGCTAGGGTGATGGCAGATTTTAATCTGaaatgtactgttactgtagcaACAAATCCTCTGTTCAAGCACTAGTCATATGCTGACCCTGGGAGTCACATTGGAAGGATGGACTAGGTGGAATGCAATGGGTGAGAGAAGGCCGGTGGCAgctagtctagtggttagagtgttgggccagtaaccgaaaggttgctggatcgaatccccgagctgacaaggtaagaatctgttGGCTGCCCCTGAGCAggccactgttccctggtaggccgtcattgtaaataagaatttgttcttaactgacttgcctagtttaaaaaggTTACATctgaaaaatattttatttttaaaatctaAGATGTTACTCCGCTTGCATCCTAACTACAACTATTAGGAGGGGAACAGCGAGACCAACGATAAACGGCTTCACCCAGTCCCTTGTGGGCATTAGTGTTCCCAATCTGTGAAACGGagacactagctaggtttccatccaattggcgataGATTGTATGCAAATTTGAGAATATTCGCATCAATGTGAATTTtctcaccagagatgtttccatcacgTTGACTTGTTGCCGATTTTAAAGGCTGTGGGttatgacgtagtgcacataaataAAAACTTTTgcagttaaattcccatgtaccaaatATAAATTAAAAAATACACTGTACATTG
>XM_036985378.1
TCTAGCGTTTCCATTTCACAGATGAATAAAGTATCTGCTGCATTCATCAACGTAGCCTAACTTTGCTTTCTCATTGAAAGATCAAATAAAAGGCACCACTTCAGATGGGTCTCATGTGttattcatcatcatcagtgCCCACCACCAAGCTGTTCATTGACGGCAAGTTTGTAGAGTCCAGCACCTCAGAATGGCTGGACATTCACAACCCTGCCACTAACGAGGTGGTGGGTCGCGTGCCCAAAGCCACCCAGACAGAGATGTTAGCTGCAGTAGAGTCCTGCTCCAGGGCCTACGCCTCCTGGGCCGAGACCTCCATCCTCACCCGCCAGCAGATCTTCCTCCGATACCAGCAGCTCATCAAGGAAAACATTAAAGAGCTAGCCAGGCTGATCACCCTGGAGCAGGGCAAGACTCTGGCTGACGCGGAGGGAGACGTCTTCAGAGGATTGCAGGTGGCAGAGCACGCCTGCAGCATCACCTCCCTGATGCTGGGGGAGACCCTGCCCTCCATCACCAAAGACATGGATACCTACACCTACCGCCTGCCCATCGGGGTGTGTGCTGGTATCGCCCCCTTCAACTTCCCTGCCATGATCCCTCTGTGGATGTTCCCCATGGGCATGGTGTGTGGCAACACCTACCTGATGAAGCCTTCCGAGCGCGTCCCAGGATGCACCATGCTGCTGGCCAGGCTGCTGCAGGACGCAGGGATGCCCGACGGGACCCTGAACATCATTCATGGACAGCACGCTGCCGTGAACTTCATCTGTGACCACCCTGCCATCAAGGCCATCAGCTTCGTGGGCTCCAACCAGGCAGGAGAGTACATCTACGAGAGAGGATCCAAGAATGGCAAGAGAGTGCAGTCCAACATGGGAGCTAAGAACCACGGTGTGGTGATGCCTGACGCAAACAAGGAGAACACTCTGAACCAGCTGGTGGGCGCAGCCTTTGGCGCTGCAGGACAGCGTTGTATGGCTCTCTCAACCGCCATTCTCGTAGGCGAGGCTCGTGAATGGCTCCCAGAGCTGGTGGAGCGCTCCAAAGCCCTGCGCGTCAATGCAGGTGACCAGCCGGGTGCTGACGTGGGTCCTCTGATCTCCCCTGAAGCCAGGGCCCGTGTTGAAAAGTTGATCCAGAGCGGCGTGGACGAGGGAGCTACGCTGCTGCTGGATGGACGCAATGTCCACGTCAAAGGATACGAGAATGGCAACTTTGTAGGGCCCACCATCATCGGCAATGTCACGCCAGCGATGACGTGCTACACGGAGGAGATATTTGGGCCGGTGCTGGTGGTTCTGGAGGCTGACACTCTGGATGAAGCCATCTCCCTGGTCAACAACAACCAGTACGGCAACGGAACCGCCATCTTCACCACCAACGGCGCCACCGCCCGCAAGTACACACACGAGGTGGATGTCGGACAGATTGGTGTGAACGTGCCCATCCCCGTCCCCCTTCCCATGTTCTCCTTCACCGGCTCCAGAGGTTCATTCAGGGGCGACACCAACTTCTACGGCAAACAGGGCATCCAATTCTACACTCAGGTCAAGACGGTTACATCACAGTGGAAGGCCGACGACGCCACCACGAAGAGCCCAGCCGTTACCATGCCGACCATGGGACGCTAAACGGAACGTTCACTTGTTAATGTGGTGTTCTCTACCTGGCACAACGTTCCACATACTGACTGACATGCGTTAACATTCAGAAGGGGTTAGCAGCCAAGGGGTACGAACAACTGATTCGCTGACAACTGATAAGTCTATTAGAGTCATGGAATATGTTTTATACCGAGTGTACTATATGAGAAACGTTTTTGTATTTGCGTTTGACCCTGTTACTGAAATTGCTTCCGCTAGGGTGATGGCAGATTTTAATCTGaaatgtactgttactgtagcaACAAATCCTCTGTTCAAGCACTAGTCATATGCTGACCCTGGGAGTCACATTGGAAGGATGGACTAGGTGGAATGCAATGGGTGAGAGAAGGCCGGTGGCAgctagtctagtggttagagtgttgggccagtaaccgaaaggttgctggatcgaatccccgagctgacaaggtaagaatctgttGGCTGCCCCTGAGCAggccactgttccctggtaggccgtcattgtaaataagaatttgttcttaactgacttgcctagtttaaaaaggTTACATctgaaaaatattttatttttaaaatctaAGATGTTACTCCGCTTGCATCCTAACTACAACTATTAGGAGGGGAACAGCGAGACCAACGATAAACGGCTTCACCCAGTCCCTTGTGGGCATTAGTGTTCCCAATCTGTGAAACGGagacactagctaggtttccatccaattggcgataGATTGTATGCAAATTTGAGAATATTCGCATCAATGTGAATTTtctcaccagagatgtttccatcacgTTGACTTGTTGCCGATTTTAAAGGCTGTGGGttatgacgtagtgcacataaataAAAACTTTTgcagttaaattcccatgtaccaaatATAAATTAAAAAATACACTGTACATTG
>TU798059
GGCCAACACCgtgtggggagagggagatgcagCGTTGGACCATTTCGAAGAGTTCACCAGCCACTTCTGGGCAGTCTTCGCCACCCGCCCGAGGGTAGAGCGGTGGGTGAGCGCCTCTTCCgtctgaggcaggggacgaggagcgcccaggagttcaCCCTGGAGCTTCGGATCCTGGCCGCcggcgcgggatggaacgacagggccctgatcgaccctTATTGTTGCAGTCTGCGCGAGGACGTCCATCaggagttggcctgcagagacaccaccGATAAACGGCTTCACCCAGTCCCTTGTGGGCATTAGTGTTCCCAATCTGTGAAACGGagacactagctaggtttccatccaattggcgataGATTGTATGCAAATTTGAGAATATTCGCATCAATGTGAATTTtctcaccagagatgtttccatcacgTTGACTTGTTGCCGATTTTAAAGGCTGTGGGttatgacgtagtgcacataaataAAAACTTTTgcagttaaattcccatgtaccaaatATAAATTAAAAAATACACTGTACATTGGTTTCCATCGCATTTAActctgatggttttgtcacatcAAATGTAGCATTATATAGCGactgtgcccactctggttttggcacgtgcgctctagccaacagtttGCAGTGCGGATACAGCCGACaacatgagattattatggacaaaggAGTGAGATTGACAAAAATAAACTGCAGccaagcattga

Function

NR:

description
growth/differentiation factor 10-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0004491 methylmalonate-semialdehyde dehydrogenase (acylating) activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985377.1 False 2609 mRNA 0.52 12 35553408 35569679
XM_036985378.1 False 2545 mRNA 0.52 12 35553408 35569807
TU798059 True 736 lncRNA 0.49 2 35553221 35608497

Neighbor

gene id symbol gene type direction distance location
LOC110529861 LOC106571572 coding downstream 6564 35537689 ~ 35546844 (-)
LOC110529855 LOC106571575 coding downstream 79556 35462273 ~ 35473852 (-)
LOC110529854 LOC106571577 coding downstream 124271 35426316 ~ 35429137 (-)
LOC110529851 prpf39 coding downstream 231603 35306928 ~ 35321805 (-)
LOC110529850 fau coding downstream 248678 35302554 ~ 35304730 (-)
LOC110529864 LOC106571569 coding upstream 58345 35628152 ~ 35632437 (-)
LOC110529865 LOC106571568 coding upstream 63666 35633473 ~ 35705333 (-)
LOC110529866 LOC106571566 coding upstream 138234 35708041 ~ 35798020 (-)
LOC118936680 LOC106571560 coding upstream 331844 35901651 ~ 35906701 (-)
LOC110529868 LOC106571561 coding upstream 346433 35916240 ~ 35920906 (-)
G701362 NA non-coding downstream 50763 35458052 ~ 35502645 (-)
G701353 NA non-coding downstream 142250 35410941 ~ 35411158 (-)
G701291 NA non-coding downstream 258072 35289149 ~ 35295336 (-)
G701204 NA non-coding downstream 365405 35187594 ~ 35188003 (-)
G701190 NA non-coding downstream 379890 35173298 ~ 35173518 (-)
G701395 NA non-coding upstream 90543 35660350 ~ 35679252 (-)
G701486 NA non-coding upstream 152266 35722073 ~ 35722772 (-)
G701522 NA non-coding upstream 162434 35732241 ~ 35732648 (-)
G701533 NA non-coding upstream 191901 35761708 ~ 35761938 (-)
G701536 NA non-coding upstream 195995 35765802 ~ 35766021 (-)
ankef1a LOC106571587 other downstream 1529523 34017010 ~ 34029131 (-)
G699468 NA other downstream 1601052 33943022 ~ 33952356 (-)
G698356 NA other downstream 2563347 32989245 ~ 32990061 (-)
G697774 LOC106571626 other downstream 3053998 32498799 ~ 32499410 (-)
LOC110529804 ypel5 other downstream 3335859 32214451 ~ 32217572 (-)
G701454 NA other upstream 13191 35582998 ~ 35589877 (-)
G701618 LOC106571560 other upstream 330816 35900623 ~ 35918175 (-)
LOC110529880 LOC106571768 other upstream 1785289 37355096 ~ 37361922 (-)
LOC110530908 otof other upstream 1919420 37474229 ~ 37626960 (-)
G704702 NA other upstream 2429228 38037725 ~ 38038346 (-)

Expression


Co-expression Network