LOC110529868 (LOC106571561)


Basic Information

Item Value
gene id LOC110529868
gene name LOC106571561
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35916240 ~ 35920906 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985398.1
CCTCCTCCAACCTCTGCACTGACAACTAACGACTGAGAACACAGCTCTCACTGTCTCAGTGTTCTTGAAATATTTAACCGTTGTTTTTCAAGCATTCTGAGATATTTCTTCAATTCTTGAATTTCATGTCTGAATAGGCCTCTCtatctgtgtgtgcatgcatgaggGTTTTagcgtgcatgtgtgcatgtctgcatgtgtgtgtgtctctgactgtgtATGCGTGTACCCTTCTTGTCCCACCAGCTCTCTGATGCTCTGTGTGGCTGTTCGTCCTCTGGTTCTATCCCCCAGGGAAGCAACAGCATCTGGCCCAGCCAGAACCAAACAGGGGGTCCTGCCTGGCCGGCACAGCCCACCCAGCCCCCATCTTGCTGGCCTGGGCAACCCAACACCCCCTGCTGGCCTGGGCCACAACCATCCCAACCAGCCCCAGCTTCAGCCCAAAACTGGCCTGGTCCCCAACCACAACCACCCCAACCAGCCCCATCCCATCCCTGCCAGCCATGCTGGCCTGGACCCCAGCCTCCCCAATTCCAGCCCCAGCCTCCCCAACCCCAGCCGCAGCCCCAACCTCAGCCTGCACCCCAGCCTTTTCAACCTACAGCTTCAGCCCCGGCTTCTTCCCAAGTCCCCAGCCAGCCTAGTGCCCCAAGGTGGCCGGTTACCCAAGGCCTTATCCCAGGCGTTAACCCAGGGTCTGGATGGCCTTTCAGCCCTGGTCAGTCTGGTTGGCCTGGTCAGAATCCAGGTGGCTTTACACCTGCTCCACAGTGGACTCCAACGCCAGCTGGACGTCTGAGCGTGCCCTACAACCTGAACCTACAAAGAGGCATCTACGACAAGATGATGATCACCATCATGGGCCGGGTCAAACCAAATGCTAAGCAGTTCACAGTGAACTTTGTGCGTGGTAATGACATTGCCTTCCACCTCAACCCTCGGTTCAACGACGGGGGCAAGCAGGCAGTGGTGAGGAACACCATGGTGGGAGAGcgctgggggaaggaggagaggcacACACAGGGAGGCTTCCCCTTCATGGCTGGACAGTCCTTCGAGATGAAGATTCTGGTTACGTTTGAGGAGTTCAAGGTGGCTGTGAACGGAGCTCAGCTGTTCGAGTTCAAACACCGCGTCAGAGAACTCAACCAGATCGATCGCATCAACATCCTCCATGATGTCATCCTCACCTACGTCAACGTAGACACAATACCATGACACCCACACCCATGACATCACTATACAGCATATAACACCCAGCATGTGCTAAATACATACAATTAATTATTTGCACCtgtttcatgatgatgatgatgatgagctgTGCTCATTCTGTGGTGCACACACAGTACTGCGTTAATGCCCACTAACTCTGTCCATGTGCAAATATACGTGATCTTAggacaaaaaaaaatgcaatgTTCTTTACTGTGACACGTTGCTTTCATCAAGAGAAAAGTCAACTGTTTCCAGCAATCAGCAAATATAAGCGCACAAAATTGTAAGCGTCTCTATCCGTTCCAAATCATGCATATTATAAGGAAAAAGCTAAGCAATGGGGACCGTCTATTTTGAAATGCTTTTTTAAACTCATCATCTCCAACATTGTGAGCATCCATTACAGAGCTTTGCTTTGGTGTAGTTTGAGGCCTGTCCATTCACATCAGTTGTGTTCTTCTACTGAATTTCCTTTTCCTGATGTCTGTTGGGGATTCTTTTTCTGCTTGCCAATGCAAAGTCTACAAACCTACCGTGTAAGAGCAGACCGACCTACATATTGAATAGGCCTACATGGGAAGAATCCTGCACAACGTGCACATTTCGCAATTCATTTTTGATCATGAACAAGTATTTGATTCGTTGTGTATGAAAATGATTGGTGACATATGCATAAAAGGTGAGTAATTTACCATCATTTGTCAACCTTTTGATAGTTGATTTTCCAATTTTGATAGTTTAGTGACCGCAAAGACGGTAATGAAATGATTAAGTGGGATATTTTTCAAGGCATACCTCTAGTCAGCTTGACTCTAGAGATATGCATGTATAGTGTTTTTGACTCTTTATGCAGGCAGTTATGTTCTTTTGATTTATTTGATGTTTTGAGAAGGCAACTACATTTTCAAAATGCATTTACTGTTTTGAAAAAGGCCACAGAGTTCTGAGACTTGTGTACACTGAATATTTTCCCGATAAAATACCGCTGGCAataaagtggggcaaaaaagtatttagtctgccattgtagggtttttaatgaatttatttgcaaattatggtggaaaataagtatttggtcacctacaaaacaagcaagaat
>XM_036985399.1
CTGCTAGAGCTGTCTAGCTGTCACCTCAACAACACAGCAACAACCTGGTTCTACAGTGTTACATCTGAGGAGACCAGTGAATAACAGATACTATGGAACTCTCTGATGCTCTGTGTGGCTGTTCGTCCTCTGGTTCTATCCCCCAGGGAAGCAACAGCATCTGGCCCAGCCAGAACCAAACAGGGGGTCCTGCCTGGCCGGCACAGCCCACCCAGCCCCCATCTTGCTGGCCTGGGCAACCCAACACCCCCTGCTGGCCTGGGCCACAACCATCCCAACCAGCCCCAGCTTCAGCCCAAAACTGGCCTGGTCCCCAACCACAACCACCCCAACCAGCCCCATCCCATCCCTGCCAGCCATGCTGGCCTGGACCCCAGCCTCCCCAATTCCAGCCCCAGCCTCCCCAACCCCAGCCGCAGCCCCAACCTCAGCCTGCACCCCAGCCTTTTCAACCTACAGCTTCAGCCCCGGCTTCTTCCCAAGTCCCCAGCCAGCCTAGTGCCCCAAGGTGGCCGGTTACCCAAGGCCTTATCCCAGGCGTTAACCCAGGGTCTGGATGGCCTTTCAGCCCTGGTCAGTCTGGTTGGCCTGGTCAGAATCCAGGTGGCTTTACACCTGCTCCACAGTGGACTCCAACGCCAGCTGGACGTCTGAGCGTGCCCTACAACCTGAACCTACAAAGAGGCATCTACGACAAGATGATGATCACCATCATGGGCCGGGTCAAACCAAATGCTAAGCAGTTCACAGTGAACTTTGTGCGTGGTAATGACATTGCCTTCCACCTCAACCCTCGGTTCAACGACGGGGGCAAGCAGGCAGTGGTGAGGAACACCATGGTGGGAGAGcgctgggggaaggaggagaggcacACACAGGGAGGCTTCCCCTTCATGGCTGGACAGTCCTTCGAGATGAAGATTCTGGTTACGTTTGAGGAGTTCAAGGTGGCTGTGAACGGAGCTCAGCTGTTCGAGTTCAAACACCGCGTCAGAGAACTCAACCAGATCGATCGCATCAACATCCTCCATGATGTCATCCTCACCTACGTCAACGTAGACACAATACCATGACACCCACACCCATGACATCACTATACAGCATATAACACCCAGCATGTGCTAAATACATACAATTAATTATTTGCACCtgtttcatgatgatgatgatgatgagctgTGCTCATTCTGTGGTGCACACACAGTACTGCGTTAATGCCCACTAACTCTGTCCATGTGCAAATATACGTGATCTTAggacaaaaaaaaatgcaatgTTCTTTACTGTGACACGTTGCTTTCATCAAGAGAAAAGTCAACTGTTTCCAGCAATCAGCAAATATAAGCGCACAAAATTGTAAGCGTCTCTATCCGTTCCAAATCATGCATATTATAAGGAAAAAGCTAAGCAATGGGGACCGTCTATTTTGAAATGCTTTTTTAAACTCATCATCTCCAACATTGTGAGCATCCATTACAGAGCTTTGCTTTGGTGTAGTTTGAGGCCTGTCCATTCACATCAGTTGTGTTCTTCTACTGAATTTCCTTTTCCTGATGTCTGTTGGGGATTCTTTTTCTGCTTGCCAATGCAAAGTCTACAAACCTACCGTGTAAGAGCAGACCGACCTACATATTGAATAGGCCTACATGGGAAGAATCCTGCACAACGTGCACATTTCGCAATTCATTTTTGATCATGAACAAGTATTTGATTCGTTGTGTATGAAAATGATTGGTGACATATGCATAAAAGGTGAGTAATTTACCATCATTTGTCAACCTTTTGATAGTTGATTTTCCAATTTTGATAGTTTAGTGACCGCAAAGACGGTAATGAAATGATTAAGTGGGATATTTTTCAAGGCATACCTCTAGTCAGCTTGACTCTAGAGATATGCATGTATAGTGTTTTTGACTCTTTATGCAGGCAGTTATGTTCTTTTGATTTATTTGATGTTTTGAGAAGGCAACTACATTTTCAAAATGCATTTACTGTTTTGAAAAAGGCCACAGAGTTCTGAGACTTGTGTACACTGAATATTTTCCCGATAAAATACCGCTGGCAataaagtggggcaaaaaagtatttagtctgccattgtagggtttttaatgaatttatttgcaaattatggtggaaaataagtatttggtcacctacaaaacaagcaagaat
>XM_036985400.1
CTGCTAGAGCTGTCTAGCTGTCACCTCAACAACACAGCAACAACCTGGTTCTACAGTGTTACATCTGAGGAGACCAGTGAATAACAGATACTATGGAAGGAAGCAACAGCATCTGGCCCAGCCAGAACCAAACAGGGGGTCCTGCCTGGCCGGCACAGCCCACCCAGCCCCCATCTTGCTGGCCTGGGCAACCCAACACCCCCTGCTGGCCTGGGCCACAACCATCCCAACCAGCCCCAGCTTCAGCCCAAAACTGGCCTGGTCCCCAACCACAACCACCCCAACCAGCCCCATCCCATCCCTGCCAGCCATGCTGGCCTGGACCCCAGCCTCCCCAATTCCAGCCCCAGCCTCCCCAACCCCAGCCGCAGCCCCAACCTCAGCCTGCACCCCAGCCTTTTCAACCTACAGCTTCAGCCCCGGCTTCTTCCCAAGTCCCCAGCCAGCCTAGTGCCCCAAGGTGGCCGGTTACCCAAGGCCTTATCCCAGGCGTTAACCCAGGGTCTGGATGGCCTTTCAGCCCTGGTCAGTCTGGTTGGCCTGGTCAGAATCCAGGTGGCTTTACACCTGCTCCACAGTGGACTCCAACGCCAGCTGGACGTCTGAGCGTGCCCTACAACCTGAACCTACAAAGAGGCATCTACGACAAGATGATGATCACCATCATGGGCCGGGTCAAACCAAATGCTAAGCAGTTCACAGTGAACTTTGTGCGTGGTAATGACATTGCCTTCCACCTCAACCCTCGGTTCAACGACGGGGGCAAGCAGGCAGTGGTGAGGAACACCATGGTGGGAGAGcgctgggggaaggaggagaggcacACACAGGGAGGCTTCCCCTTCATGGCTGGACAGTCCTTCGAGATGAAGATTCTGGTTACGTTTGAGGAGTTCAAGGTGGCTGTGAACGGAGCTCAGCTGTTCGAGTTCAAACACCGCGTCAGAGAACTCAACCAGATCGATCGCATCAACATCCTCCATGATGTCATCCTCACCTACGTCAACGTAGACACAATACCATGACACCCACACCCATGACATCACTATACAGCATATAACACCCAGCATGTGCTAAATACATACAATTAATTATTTGCACCtgtttcatgatgatgatgatgatgagctgTGCTCATTCTGTGGTGCACACACAGTACTGCGTTAATGCCCACTAACTCTGTCCATGTGCAAATATACGTGATCTTAggacaaaaaaaaatgcaatgTTCTTTACTGTGACACGTTGCTTTCATCAAGAGAAAAGTCAACTGTTTCCAGCAATCAGCAAATATAAGCGCACAAAATTGTAAGCGTCTCTATCCGTTCCAAATCATGCATATTATAAGGAAAAAGCTAAGCAATGGGGACCGTCTATTTTGAAATGCTTTTTTAAACTCATCATCTCCAACATTGTGAGCATCCATTACAGAGCTTTGCTTTGGTGTAGTTTGAGGCCTGTCCATTCACATCAGTTGTGTTCTTCTACTGAATTTCCTTTTCCTGATGTCTGTTGGGGATTCTTTTTCTGCTTGCCAATGCAAAGTCTACAAACCTACCGTGTAAGAGCAGACCGACCTACATATTGAATAGGCCTACATGGGAAGAATCCTGCACAACGTGCACATTTCGCAATTCATTTTTGATCATGAACAAGTATTTGATTCGTTGTGTATGAAAATGATTGGTGACATATGCATAAAAGGTGAGTAATTTACCATCATTTGTCAACCTTTTGATAGTTGATTTTCCAATTTTGATAGTTTAGTGACCGCAAAGACGGTAATGAAATGATTAAGTGGGATATTTTTCAAGGCATACCTCTAGTCAGCTTGACTCTAGAGATATGCATGTATAGTGTTTTTGACTCTTTATGCAGGCAGTTATGTTCTTTTGATTTATTTGATGTTTTGAGAAGGCAACTACATTTTCAAAATGCATTTACTGTTTTGAAAAAGGCCACAGAGTTCTGAGACTTGTGTACACTGAATATTTTCCCGATAAAATACCGCTGGCAataaagtggggcaaaaaagtatttagtctgccattgtagggtttttaatgaatttatttgcaaattatggtggaaaataagtatttggtcacctacaaaacaagcaagaat

Function

NR:

description
galectin-3-like isoform X2

GO: NA

KEGG:

id description
K06831 LGALS3; galectin-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985398.1 False 2323 mRNA 0.47 4 35916240 35919219
XM_036985399.1 False 2175 mRNA 0.47 6 35916240 35920906
XM_036985400.1 True 2127 mRNA 0.47 6 35916240 35920906

Neighbor

gene id symbol gene type direction distance location
LOC118936680 LOC106571560 coding downstream 9539 35901651 ~ 35906701 (-)
LOC110529866 LOC106571566 coding downstream 118220 35708041 ~ 35798020 (-)
LOC110529865 LOC106571568 coding downstream 210907 35633473 ~ 35705333 (-)
LOC110529864 LOC106571569 coding downstream 283803 35628152 ~ 35632437 (-)
LOC110529862 LOC106571571 coding downstream 346433 35553221 ~ 35608497 (-)
LOC110529870 LOC106571558 coding upstream 132030 36052936 ~ 36059371 (-)
LOC110529235 plcb4 coding upstream 142631 36063537 ~ 36206480 (-)
LOC110529236 plcb1 coding upstream 295328 36216234 ~ 36490738 (-)
LOC110529872 LOC106571739 coding upstream 622909 36543815 ~ 36552132 (-)
LOC110529875 LOC106571742 coding upstream 698195 36619101 ~ 36626061 (-)
G701552 NA non-coding downstream 116661 35798798 ~ 35799579 (-)
G701538 NA non-coding downstream 147027 35768175 ~ 35769213 (-)
G701537 NA non-coding downstream 149802 35766223 ~ 35766438 (-)
G701536 NA non-coding downstream 150219 35765802 ~ 35766021 (-)
G701533 NA non-coding downstream 154302 35761708 ~ 35761938 (-)
G701966 NA non-coding upstream 11428 35932334 ~ 35956729 (-)
G702011 NA non-coding upstream 83337 36004243 ~ 36006929 (-)
G702014 NA non-coding upstream 88586 36009492 ~ 36009856 (-)
G702017 NA non-coding upstream 94969 36015875 ~ 36016190 (-)
G702020 NA non-coding upstream 98987 36019893 ~ 36020104 (-)
G701454 NA other downstream 326363 35582998 ~ 35589877 (-)
ankef1a LOC106571587 other downstream 1892355 34017010 ~ 34029131 (-)
G699468 NA other downstream 1963884 33943022 ~ 33952356 (-)
G698356 NA other downstream 2926179 32989245 ~ 32990061 (-)
LOC110529880 LOC106571768 other upstream 1434190 37355096 ~ 37361922 (-)
LOC110530908 otof other upstream 1568321 37474229 ~ 37626960 (-)
G704702 NA other upstream 2116819 38037725 ~ 38038346 (-)
G704874 NA other upstream 2392583 38313489 ~ 38313803 (-)
G706683 stxbp5 other upstream 3298738 39219644 ~ 39226313 (-)

Expression


Co-expression Network