LOC110529870 (LOC106571558)


Basic Information

Item Value
gene id LOC110529870
gene name LOC106571558
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 36052936 ~ 36059371 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985404.1
CAACGTCAGTGCAGTGAAAAGCTCATTGTGAGAAGAATACTCAAATGCAAGTCATTATTATAACATGTATTAGACTCACCGGTGTGGACATCTCTATGCCCTGCCCATTTTTCTAGCATAGACATGCGGGATCCTGGCCCGGTTGACCGTGATGGctgagcaagagggagagaatcTCTCCGGTCTGTCCACCAACCCAGACAAAGACATCTTCGTGGTCCGGGAGAACGGGACCACCTGCCTCATGGTCGAGTTCGCTGTCCGCTTCACGGTCCCCTTCGACGTCCTCGCGATCAACGGGATAGACCTCATCACGGAGAATGCGTATCTGTCTCTGCCTCGCGGGGCAGACATTGAAGGGAAATGCGGGAGCCAGGACGCCGATATACACATCTCGTGGAAGGATAAGGCCTACACACTCCGCATCAACTTCGTCAAGGAAACCCGTGACAAGGGAGATGAGGTGTGGAAGATTAGCAAATTGCAGTTTGTTTATGACACCTCGGAGAAAACGCATTTCATCAACCCATACAACCctGGGAAGCACACAGCCAGCTCCCACGGTCTGTCAGCGCTAGTGACCCCTGCTGGCCACTCCTATGTCTGCGAGGCTAAGCAGACACTCACCCTCATCTCCAGTGACCACCAAAAGGGAGTGACTGTCGCCATGAGTGACATTCAGATCCAGCCCTTCGACATCAACTCAGACTTCATGTTTAGTGAAGCCTATAAGTGCATCACGGACCAGCGGGAACAGCTGGAGGAGACTCTTCCTCTGATCCTGGGTTTCATCCTGGGCCTCATCATCGTCATCACGCTGTCCGTCTACCACTTCCACCTCAAACTGACCGCTGTCACCCAGCCACAACTGCCCCGCGACCGGTCCATGTACAAGAACATGTAAGGAACTGGACATTGAAACAAACACTATATGACGACTCTCCATGGTCAAGGATAGTACAGTAGAACAACATTCCAAGACTCCCCATGTTCAAGACCATCTAAGGAATCAAACATTAGATCATCATCAACACAATGACTCTCCATGTACAAGGTAATAGGACACTGAAACAAGCACAACATGATGTTCAAGACATGTAAGGAATCAGACACTACAAATCACTACGACTCTCCATGTTCAAGGATATAGGACATTAAAAACAAGACGACATGACTACTCTCCATTCAAGGATATAAAAAAAATGGTACTAGACTACAATTATAACCACAACGCTCCTGCCTCTCCAAAGTCAAACCAATGTGACTTCCCTTGCTCTGAACTCCCCATATATTGGAGAGTAGGCCATCACTTTATGGAGGCCTAACTTGAGATACGTGTGCGTAATTTGGAGCGTTCTCGTAAAATCCTGCATTGAAGTCCTTTGGAGACTTGCGCAACATTCGATTTACGCacacgttttttttcttcttcagttaGCGTTccaccccagtgtgttctgctgtCCAGAAATcgctgttttttctttttttgttgagagGCCTGCGCTTTTGTCATCATCCCCCCCATCACGTGTCTCTGTCTTTTCTGTCAACGAGCTACAAAAGAAACCTGGCAGGTTAGCAGGTCCAGAGTTGATGTTCAGCTGAAGTTTTTACTTTCCTGACTCCGGTTTTTACTTTTTGTTTTAGAATGCAACCATCGTGGTGAAAGTGGACGgtgttgtggtgtgtatgtaCACTGTGCAGGTGTTTCAATGAACTTCAGAAATCATGCAAAATAAAACATTGCAGGAAACGCTTTACTTTGGTATGAACGGATCATTTTCCAGATCTGACTCGATGGAATTATGTcaagaaaaaaatatgaaacgtaaattgaaaaaaaaagaaggaaaacaTGGTCTGTAAAAacgtgccccccccccaaaaaaaaatatttaatacatttatcTCATATCAGAATGTCAGAAGAAGTTTATCATTGTGTTTATCATTGTGAAAGAAATGTGCAAAGATATTTCAGATTTAAAAAGAATAAATGTACACTATTTTCAGAAAGACTATGCATAGAAAACTATGCTGATGCTACTTTAATGTTCACCGAAATAAATTTTACAGGAGATATCCTAA
>XM_036985403.1
ACTGCGCGGGTGTCCTCAAGCCTGAgttcacacacactgagctgtgtgtgagagagagcgcgtTGCCAGACTGCAAtccacgcacgcacatacaccaCAGCAGCTGCAATCTTGCTCAGAagcagagaggagggggtagcaaagatcccctcacacacacacacacacacacacctcagctgCAATCACAGTGATGGAAAGAGAAGCATTGCGGGACTAGCTGCGGTTGCTGCAGCGAAGCTCTTTGGAAGAAACAAACTTCGGGAGAGAAACTGAACTTCTTCCCCCGGTGAATCACGCTACCCCGCCAGTCAGCGGTTTCAGTGCCTGGATCCAGTACAATGGAGCGGCTCAGATTCAGCACCTTGGACAGCGCAGGACTTCTGCTACGTTTGTTCGGGATCCTGGCCCGGTTGACCGTGATGGctgagcaagagggagagaatcTCTCCGGTCTGTCCACCAACCCAGACAAAGACATCTTCGTGGTCCGGGAGAACGGGACCACCTGCCTCATGGTCGAGTTCGCTGTCCGCTTCACGGTCCCCTTCGACGTCCTCGCGATCAACGGGATAGACCTCATCACGGAGAATGCGTATCTGTCTCTGCCTCGCGGGGCAGACATTGAAGGGAAATGCGGGAGCCAGGACGCCGATATACACATCTCGTGGAAGGATAAGGCCTACACACTCCGCATCAACTTCGTCAAGGAAACCCGTGACAAGGGAGATGAGGTGTGGAAGATTAGCAAATTGCAGTTTGTTTATGACACCTCGGAGAAAACGCATTTCATCAACCCATACAACCctGGGAAGCACACAGCCAGCTCCCACGGTCTGTCAGCGCTAGTGACCCCTGCTGGCCACTCCTATGTCTGCGAGGCTAAGCAGACACTCACCCTCATCTCCAGTGACCACCAAAAGGGAGTGACTGTCGCCATGAGTGACATTCAGATCCAGCCCTTCGACATCAACTCAGACTTCATGTTTAGTGAAGCCTATAAGTGCATCACGGACCAGCGGGAACAGCTGGAGGAGACTCTTCCTCTGATCCTGGGTTTCATCCTGGGCCTCATCATCGTCATCACGCTGTCCGTCTACCACTTCCACCTCAAACTGACCGCTGTCACCCAGCCACAACTGCCCCGCGACCGGTCCATGTACAAGAACATGTAAGGAACTGGACATTGAAACAAACACTATATGACGACTCTCCATGGTCAAGGATAGTACAGTAGAACAACATTCCAAGACTCCCCATGTTCAAGACCATCTAAGGAATCAAACATTAGATCATCATCAACACAATGACTCTCCATGTACAAGGTAATAGGACACTGAAACAAGCACAACATGATGTTCAAGACATGTAAGGAATCAGACACTACAAATCACTACGACTCTCCATGTTCAAGGATATAGGACATTAAAAACAAGACGACATGACTACTCTCCATTCAAGGATATAAAAAAAATGGTACTAGACTACAATTATAACCACAACGCTCCTGCCTCTCCAAAGTCAAACCAATGTGACTTCCCTTGCTCTGAACTCCCCATATATTGGAGAGTAGGCCATCACTTTATGGAGGCCTAACTTGAGATACGTGTGCGTAATTTGGAGCGTTCTCGTAAAATCCTGCATTGAAGTCCTTTGGAGACTTGCGCAACATTCGATTTACGCacacgttttttttcttcttcagttaGCGTTccaccccagtgtgttctgctgtCCAGAAATcgctgttttttctttttttgttgagagGCCTGCGCTTTTGTCATCATCCCCCCCATCACGTGTCTCTGTCTTTTCTGTCAACGAGCTACAAAAGAAACCTGGCAGGTTAGCAGGTCCAGAGTTGATGTTCAGCTGAAGTTTTTACTTTCCTGACTCCGGTTTTTACTTTTTGTTTTAGAATGCAACCATCGTGGTGAAAGTGGACGgtgttgtggtgtgtatgtaCACTGTGCAGGTGTTTCAATGAACTTCAGAAATCATGCAAAATAAAACATTGCAGGAAACGCTTTACTTTGGTATGAACGGATCATTTTCCAGATCTGACTCGATGGAATTATGTcaagaaaaaaatatgaaacgtaaattgaaaaaaaaagaaggaaaacaTGGTCTGTAAAAacgtgccccccccccaaaaaaaaatatttaatacatttatcTCATATCAGAATGTCAGAAGAAGTTTATCATTGTGTTTATCATTGTGAAAGAAATGTGCAAAGATATTTCAGATTTAAAAAGAATAAATGTACACTATTTTCAGAAAGACTATGCATAGAAAACTATGCTGATGCTACTTTAATGTTCACCGAAATAAATTTTACAGGAGATATCCTAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985404.1 False 2091 mRNA 0.45 6 36052936 36058362
XM_036985403.1 True 2362 mRNA 0.47 7 36052936 36059371

Neighbor

gene id symbol gene type direction distance location
LOC110529868 LOC106571561 coding downstream 132030 35916240 ~ 35920906 (-)
LOC118936680 LOC106571560 coding downstream 146235 35901651 ~ 35906701 (-)
LOC110529866 LOC106571566 coding downstream 254916 35708041 ~ 35798020 (-)
LOC110529865 LOC106571568 coding downstream 347603 35633473 ~ 35705333 (-)
LOC110529864 LOC106571569 coding downstream 420499 35628152 ~ 35632437 (-)
LOC110529235 plcb4 coding upstream 4166 36063537 ~ 36206480 (-)
LOC110529236 plcb1 coding upstream 156863 36216234 ~ 36490738 (-)
LOC110529872 LOC106571739 coding upstream 484444 36543815 ~ 36552132 (-)
LOC110529875 LOC106571742 coding upstream 559730 36619101 ~ 36626061 (-)
trnaa-ugc-26 NA coding upstream 597194 36656565 ~ 36656638 (-)
G702039 NA non-coding downstream 1115 36051514 ~ 36051821 (-)
G702026 NA non-coding downstream 25480 36027256 ~ 36027456 (-)
G702020 NA non-coding downstream 32832 36019893 ~ 36020104 (-)
G702017 NA non-coding downstream 36746 36015875 ~ 36016190 (-)
G702014 NA non-coding downstream 43080 36009492 ~ 36009856 (-)
G702056 NA non-coding upstream 41978 36101349 ~ 36102190 (-)
G702145 NA non-coding upstream 165061 36224432 ~ 36224789 (-)
G702149 NA non-coding upstream 169804 36229175 ~ 36233884 (-)
G702161 NA non-coding upstream 199997 36259368 ~ 36259824 (-)
G702295 NA non-coding upstream 424337 36483708 ~ 36485467 (-)
G701618 LOC106571560 other downstream 134761 35900623 ~ 35918175 (-)
G701454 NA other downstream 463059 35582998 ~ 35589877 (-)
ankef1a LOC106571587 other downstream 2029051 34017010 ~ 34029131 (-)
G699468 NA other downstream 2100580 33943022 ~ 33952356 (-)
LOC110529880 LOC106571768 other upstream 1295725 37355096 ~ 37361922 (-)
LOC110530908 otof other upstream 1429856 37474229 ~ 37626960 (-)
G704702 NA other upstream 1978354 38037725 ~ 38038346 (-)
G704874 NA other upstream 2254118 38313489 ~ 38313803 (-)
G706683 stxbp5 other upstream 3160273 39219644 ~ 39226313 (-)

Expression


Co-expression Network