LOC110529872 (LOC106571739)


Basic Information

Item Value
gene id LOC110529872
gene name LOC106571739
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 36543815 ~ 36552132 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612508.2
ACAGGAGGTGGTTGGAATCGACATGAATGACAGCCCTGCGTTGGTGACATCACTGGACAACAAAAAGCCTCGTCCGGGGAAGGAAAGGCAACAATCAATTGGACTGCTACAGTGTGCcgcacacaggagagagaggtgacgCTCCCCAACCCacagacacagagtacaaggagcGACGGACAGAGTACAGTTTAATCTTCCACACCCGTTCTCTGCTAAAGTTGATCCTTCTAAAGTTAGCATTTGAAGATGTTTAATGGCGCTTCTTTATACTTACTTCGATGGGTTCTGCCTACACAAGTCCGCTTAGATAGAACGTAGGCATTTCTTTTATTTTATTCTATTGACCAAGAAGTCTCCAGATTCCCAGCTGCGGAGATATGTGCAAAAGAGGAGGCGATCGGAGCAGTGGACGGACTGTATTTCGTCCACAGAAGGAACGCGTGGAATAAACACGAATTAATGTGGAATTTATTGGAGCCCAAAGCTGGAAGGACGACTGGACACAGCGCTTCCTTATCAGggACTGACTGACCATGGTCGCCGTGTTTCGTTCTCTCATGGTACTGCTGCTGGCTCAGGTGTTGCTAGGAGGCGCTGCGGGACTTATCCCCGAGGTCGGCCGGAGGAAGTACAGCGAGTCCGGGAAGCAGAGCCCGGAGCAGTCGGATAACTTTCTTAACGAGTTTGAGCTGCGGCTCCTCAATATGTTCGGACTTAAACGGAGGCCGAACCCGAGCAGGCAGGCTGTGGTGCCCCAGTACATGGTGGACCTGTACCGTATGCACTCGGCGAACGGAGACCACAGCACTAAACGGCCCCGGAGCATGgggagacacgcagagagagccGCCAGCAAGGCCAACACGATTAGAAGCTTTCACCACGAAGAATCCATGGAGGCTCTGGCAAGTCTGAAGGGCAGGACCACCCAGCAGTTCTTCTTCAATCTCACCTCCATCCCTGGAGAAGAGCTCATCACCTCTGCAGAGCTCCGGGTCTACAGGGACCAGGTCCTGGGGGCCACAGCAGCTCCCACCAGTAACACCAGTCACAACAGCAGTAACCGCTCCAGTACCAATACCAGTACCAGTGTTGGTGGCATCCATCGTATCAACGTGTACGAGGTGTTTGGAGCCCCTGCATCTCCCCGTGGGGAACCCCTGACGCGCCTCCTGGACACTCGGCTGGTGCAGGATTCTCTGAGCCGTTGGGAAAGCTTCGACGTCAGCCCCGCCGTGTCCCAGTGGTCCTCCGGGGGGAGCCACAACCACGGATTCATGGTGGAGGTGTTCCACCCAGACACCCAGGGGGACGAGGAGGCCCGGAGACAGAGCAGGCACGTCAGGGTGAGCCGCTCCCTCCACGAGGACCAGGACTCATGGCCCCAGGCTCGACCCCTGCTGGTGACCTACAGTCATGACGGGCGGGGGAACGCGGTGCTGCACAGGGACAAGAGACAGGCAGCAGGCCACAGGAAACAGAGGAGGAAGCATCAACACAAGGCCAACTGCCACAGACACGAACTCGACGTGGACTTCAGCGAAGTGGGCTGGAACGAGTGGATAGTGGCGCCCCCTGGCTACCATGCCTTCTACTGCCACGGGGTATGTCCCTTCCCATTGGCCGACCACCTCAACTCCACCAACCACGCCATCGTTCAGACGCTGGTCAACTCTGTGAACTCCAACATCCCCCGGGCGTGCTGCGTGCCCACAGAGCTCAGCCCCATATCACTGCTCTATCTGGACGAGTATGAGAAGGTCATCCTCAAAAACTACCAGGacatggtggtggaggggtgtggCTGCCGgtgagacatacagagagagagagagagggatgggatgaagggatggagactGAGAAGGACGTAGAGTGTGAGGCTATATGGACACCCGGTTTCCcaatgaaaatgttttatttaaatgaAAGAAAATACACAAACAGAGCTATTTTGGGAGAAGAAGTACAAATAACTATATATGAATATATTTATGTCTAGTTAAAGTTgggaaaaataaatattttacttGGAGGAATAATCCTTTACTGGTTTTGAAAATGTATATCTGATGTACATTTCGAATTGGGTGCAATACCACATGAAGTATAATGCTcagatttttattttgtatttatttctatTATAACCACTTTGTTTGTAAATAAATCATGTGTATTTATCGCGAGAAAACACTTTGGTTGTTCTAATTGTCCCCCAACATGTCCAGCTGACTTCACAACGTGTGTTTGAAAACATTCAAATCACACTAAGGATGTCAAGGGGTGGAAAAGGTAACGGAGCTACAAACCTCTCCCACATAAATTAGCTgcgaccccccccccaaaaaaacaagaCCAGGTTAAAAGCTAACTCTCTAAAACTGAATTGCCTAGATGAAGCATTTACAGCTACTATGATAAACATAGCTGGAGCATGGTGGTGTGTTTTGAAAAGGGTCAGTGTAAGTGTGGTGTAATGGCCTGCAATGGGGTATAGAATCACAGCAGGGTCCAGGGTAGTTACATCTATACAGATGTTATAAGGTCTCTGGGGAGGACTAAGGAAAACACAGCGAGATGTTTGCCTCCGCTACATGGCGTTGTACAGATCCCTGGGAATGAAGGCTGAGGTAAAAGTTAACCCCTGGGAATAGTTcatttaaaag

Function

NR:

description
bone morphogenetic protein 2-like

GO:

id name namespace
GO:0040007 growth biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K21283 BMP2; bone morphogenetic protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612508.2 True 2672 mRNA 0.51 3 36543815 36552132

Neighbor

gene id symbol gene type direction distance location
LOC110529236 plcb1 coding downstream 53077 36216234 ~ 36490738 (-)
LOC110529235 plcb4 coding downstream 337335 36063537 ~ 36206480 (-)
LOC110529870 LOC106571558 coding downstream 484444 36052936 ~ 36059371 (-)
LOC110529868 LOC106571561 coding downstream 622909 35916240 ~ 35920906 (-)
LOC118936680 LOC106571560 coding downstream 637114 35901651 ~ 35906701 (-)
LOC110529875 LOC106571742 coding upstream 66969 36619101 ~ 36626061 (-)
trnaa-ugc-26 NA coding upstream 104433 36656565 ~ 36656638 (-)
gzf1 LOC106571746 coding upstream 122548 36674680 ~ 36682338 (-)
LOC110529879 LOC106571770 coding upstream 597191 37149323 ~ 37271260 (-)
LOC110529880 LOC106571768 coding upstream 802968 37355096 ~ 37361922 (-)
G702295 NA non-coding downstream 58348 36483708 ~ 36485467 (-)
G702161 NA non-coding downstream 283991 36259368 ~ 36259824 (-)
G702149 NA non-coding downstream 309931 36229175 ~ 36233884 (-)
G702145 NA non-coding downstream 319026 36224432 ~ 36224789 (-)
G702056 NA non-coding downstream 441625 36101349 ~ 36102190 (-)
G703117 NA non-coding upstream 85100 36637232 ~ 36699970 (-)
G703087 NA non-coding upstream 91188 36643320 ~ 36644736 (-)
G703147 NA non-coding upstream 158494 36710626 ~ 36710921 (-)
G703155 NA non-coding upstream 166964 36719096 ~ 36719296 (-)
G703179 LOC106571747 non-coding upstream 210073 36762205 ~ 36767971 (-)
G701618 LOC106571560 other downstream 625640 35900623 ~ 35918175 (-)
LOC110529865 LOC106571568 other downstream 838502 35633473 ~ 35705333 (-)
G701454 NA other downstream 953938 35582998 ~ 35589877 (-)
ankef1a LOC106571587 other downstream 2519930 34017010 ~ 34029131 (-)
G699468 NA other downstream 2591459 33943022 ~ 33952356 (-)
LOC110530908 otof other upstream 937095 37474229 ~ 37626960 (-)
G704702 NA other upstream 1485593 38037725 ~ 38038346 (-)
G704874 NA other upstream 1761357 38313489 ~ 38313803 (-)
G706683 stxbp5 other upstream 2667512 39219644 ~ 39226313 (-)

Expression


Co-expression Network