XLOC_025784 (hbbe1.2)


Basic Information

Item Value
gene id XLOC_025784
gene name hbbe1.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 55122662 ~ 55123439 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050657
ACAGCACTCTTCAGCTTCTGTTTAAGACACTTAGTCTGAACATCTAAAGTCGAAAACATGGTTGTGTGGACAGACTTCGAGAAGGCCACCATTCAAGATATCTTCGCCAAGGCTGACTACGACGTCATCGGTCCTCAGGCTCTGGCAAGGTAATGAGTCTTGGAGCTTATATTAACTTATATTTATAACATTACATAAGGCAGGAGACTGGTTTCGagacagctgctctaataaaaTTTGTTTTCATCAGGTGTCTTATCGTGTACCCCTGGACCCAGCGGTACTTCGCCAAGTTTGGAAACCTCTACAATGCCGCTGCCATCCTGGGAAACCCAATGGTTGCTGCCCACGGTAAAACTGTGCTCAAGGGTCTGGAGCTGGCTGTAAAGAACATGGACAACATCAAGGCCACCTATGCTGATTTAAGTGTGCTGCACTCCGAGAAGCTCCACGTAGATCCCGACAACTTCAGGCTTTTGGCTGATTGCTTGACCATCGTTGTTGCTGCTCAGATGGGTGCTGGATTCACACCTGAAGTTCAGGCCGCTTTCCAGAAATTCATCGCTG
>TCONS_00050658
ACAGCACTCTTCAGCTTCTGTTTAAGACACTTAGTCTGAACATCTAAAGTCGAAAACATGGTTGTGTGGACAGACTTCGAGAAGGCCACCATTCAAGATATCTTCGCCAAGGCTGACTACGACGTCATCGGTCCTCAGGCTCTGGCAAGGTGTCTTATCGTGTACCCCTGGACCCAGCGGTACTTCGCCAAGTTTGGAAACCTCTACAATGCCGCTGCCATCCTGGGAAACCCAATGGTTGCTGCCCACGGTAAAACTGTGCTCAAGGGTCTGGAGCTGGCTGTAAAGAACATGGACAACATCAAGGCCACCTATGCTGATTTAAGTGTGCTGCACTCCGAGAAGCTCCACGTAGATCCCGACAACTTCAGGCTTTTGGCTGATTGCTTGACCATCGTTGTTGCTGCTCAGATGGGTGCTGGATTCACACCTGAAGTTCAGGCCGCTTTCCAGAAATTCATCGCTGTTGCGGTGTCCGCTCTGGGAAGACAGTACCACTAAATACAGACAGAGAGAGATTATAATGTTTCCACTAAAGAATGTGCTATTCTGAGTTGAAGCAAATAAATATTTCACTATTCAA

Function

symbol description
hbbe1.2 Predicted to enable several functions, including heme binding activity; oxygen binding activity; and oxygen carrier activity. Predicted to contribute to haptoglobin binding activity and peroxidase activity. Predicted to be involved in hydrogen peroxide catabolic process. Predicted to be part of haptoglobin-hemoglobin complex and hemoglobin complex.

GO:

id name namespace
GO:0016999 antibiotic metabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0048468 cell development biological_process
GO:0042743 hydrogen peroxide metabolic process biological_process
GO:0030154 cell differentiation biological_process
GO:0042744 hydrogen peroxide catabolic process biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0051186 obsolete cofactor metabolic process biological_process
GO:0051187 obsolete cofactor catabolic process biological_process
GO:0015893 drug transport biological_process
GO:0017144 drug metabolic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0015669 gas transport biological_process
GO:0015671 oxygen transport biological_process
GO:0032502 developmental process biological_process
GO:0048066 developmental pigmentation biological_process
GO:0072593 reactive oxygen species metabolic process biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0031838 haptoglobin-hemoglobin complex cellular_component
GO:0005833 hemoglobin complex cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0016684 oxidoreductase activity, acting on peroxide as acceptor molecular_function
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0004601 peroxidase activity molecular_function
GO:0016209 antioxidant activity molecular_function
GO:0140104 molecular carrier activity molecular_function
GO:0043177 organic acid binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0031720 haptoglobin binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090501-3 Predicted to enable several functions, including heme binding activity; oxygen binding activity; and oxygen carrier activity. Predicted to contribute to haptoglobin binding activity and peroxidase activity. Predicted to be involved in hydrogen peroxide catabolic process. Predicted to be part of haptoglobin-hemoglobin complex and hemoglobin complex.

Ensembl:

ensembl_id ENSDARG00000115405

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050657 False 567 lncRNA 0.47 2 55122662 55123322
TCONS_00050658 True 583 mRNA 0.48 3 55122662 55123439

Neighbor

gene id symbol gene type direction distance location
XLOC_025783 hbbe1.1 coding upstream 7788 55114097 ~ 55114874 (+)
XLOC_025782 si:ch211-5k11.8 coding upstream 16696 55105066 ~ 55105966 (+)
XLOC_025781 hbaa1 coding upstream 21726 55100045 ~ 55100936 (+)
XLOC_025780 hbaa2 coding upstream 28263 55093581 ~ 55094399 (+)
XLOC_025779 mpg coding upstream 79512 55031685 ~ 55043150 (+)
XLOC_025785 hbbe1.3 coding downstream 7850 55131289 ~ 55132052 (+)
XLOC_025786 si:dkey-114l24.2 coding downstream 164761 55288200 ~ 55290637 (+)
XLOC_025787 CT583658.1 coding downstream 175604 55299043 ~ 55299158 (+)
XLOC_025788 NA coding downstream 262776 55386215 ~ 55387657 (+)
XLOC_025789 NA coding downstream 358681 55482120 ~ 55488241 (+)
XLOC_025429 BX649540.1 misc upstream 24873626 30248739 ~ 30249036 (+)
XLOC_025776 NA non-coding upstream 286145 54834509 ~ 54836517 (+)
XLOC_025769 NA non-coding upstream 786023 54332726 ~ 54336639 (+)
XLOC_025768 NA non-coding upstream 819038 54289678 ~ 54303624 (+)
XLOC_025767 NA non-coding upstream 838477 54283767 ~ 54284185 (+)
XLOC_025766 NA non-coding upstream 851317 54270703 ~ 54271345 (+)
XLOC_025790 NA non-coding downstream 523434 55646873 ~ 55654264 (+)
XLOC_025791 FP326652.1 non-coding downstream 975817 56099256 ~ 56107909 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000113_00308045_00308457 HBBE2, HBBE1.1 coding CI01000113 null 307904 ~ 308514 (-)