Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110530908 |
| gene name | otof |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 37474229 ~ 37626960 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| otof | Predicted to enable AP-2 adaptor complex binding activity and calcium ion binding activity. Predicted to be involved in plasma membrane organization and synaptic vesicle priming. Predicted to be located in endoplasmic reticulum. Predicted to be active in presynaptic active zone membrane and synaptic vesicle membrane. Implicated in autosomal recessive nonsyndromic deafness 9. |
| description |
|---|
| LOW QUALITY PROTEIN: otoferlin-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036985435.1 | False | 6553 | mRNA | 0.53 | 45 | 37474229 | 37626960 |
| XM_036985432.1 | False | 6535 | mRNA | 0.54 | 46 | 37477332 | 37626960 |
| XM_036985434.1 | False | 6535 | mRNA | 0.54 | 46 | 37477332 | 37626960 |
| XM_036985431.1 | False | 6611 | mRNA | 0.54 | 47 | 37477464 | 37626960 |
| XM_036985433.1 | False | 6611 | mRNA | 0.54 | 47 | 37477464 | 37626960 |
| TU800488 | True | 595 | TUCP | 0.52 | 6 | 37489227 | 37492157 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| opn8a | LOC106608050 | coding | downstream | 17294 | 37425738 ~ 37456935 (-) |
| LOC110529880 | LOC106571768 | coding | downstream | 112307 | 37355096 ~ 37361922 (-) |
| LOC110529879 | LOC106571770 | coding | downstream | 202969 | 37149323 ~ 37271260 (-) |
| gzf1 | LOC106571746 | coding | downstream | 791891 | 36674680 ~ 36682338 (-) |
| trnaa-ugc-26 | NA | coding | downstream | 817591 | 36656565 ~ 36656638 (-) |
| sod2 | sod2 | coding | upstream | 155214 | 37782174 ~ 37792728 (-) |
| acbd3 | LOC106571761 | coding | upstream | 190912 | 37817872 ~ 37851844 (-) |
| LOC110530910 | LOC106571760 | coding | upstream | 232297 | 37859257 ~ 37879878 (-) |
| LOC110530911 | parp1 | coding | upstream | 278210 | 37905170 ~ 37921411 (-) |
| LOC110531088 | NA | coding | upstream | 303158 | 37930118 ~ 37931963 (-) |
| G703647 | drc1 | non-coding | downstream | 1486 | 37470891 ~ 37472743 (-) |
| G703627 | NA | non-coding | downstream | 31616 | 37442267 ~ 37442613 (-) |
| G703548 | NA | non-coding | downstream | 44406 | 37428107 ~ 37429823 (-) |
| G703547 | mut | non-coding | downstream | 50945 | 37390375 ~ 37423284 (-) |
| G703617 | NA | non-coding | downstream | 60672 | 37412941 ~ 37413557 (-) |
| G704025 | NA | non-coding | upstream | 123642 | 37750602 ~ 37750921 (-) |
| G704028 | NA | non-coding | upstream | 126507 | 37753467 ~ 37753666 (-) |
| G704035 | NA | non-coding | upstream | 133307 | 37760267 ~ 37760785 (-) |
| G704036 | NA | non-coding | upstream | 135387 | 37762347 ~ 37762806 (-) |
| G704037 | LOC106584613 | non-coding | upstream | 144315 | 37771275 ~ 37771522 (-) |
| G701618 | LOC106571560 | other | downstream | 1556054 | 35900623 ~ 35918175 (-) |
| LOC110529865 | LOC106571568 | other | downstream | 1768916 | 35633473 ~ 35705333 (-) |
| G701454 | NA | other | downstream | 1884352 | 35582998 ~ 35589877 (-) |
| ankef1a | LOC106571587 | other | downstream | 3450344 | 34017010 ~ 34029131 (-) |
| G704702 | NA | other | upstream | 410765 | 38037725 ~ 38038346 (-) |
| G704874 | NA | other | upstream | 686529 | 38313489 ~ 38313803 (-) |
| G706683 | stxbp5 | other | upstream | 1592684 | 39219644 ~ 39226313 (-) |
| slc22a16 | LOC106571810 | other | upstream | 2330001 | 39956961 ~ 40017167 (-) |
| G709272 | NA | other | upstream | 5092811 | 42719771 ~ 42720699 (-) |
| G703648 | NA | non-coding | downstream | 11935 | 37474752 ~ 37477292 (-) |
| G703653 | NA | non-coding | upstream | 6782 | 37498939 ~ 37506549 (-) |
| G703684 | NA | non-coding | upstream | 56770 | 37548927 ~ 37586929 (-) |
