LOC110530909 (LOC106571774)


Basic Information

Item Value
gene id LOC110530909
gene name LOC106571774
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37652125 ~ 37733599 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986868.1
CCATTGGAATCATATTAATGCCCACTGTGTGCGTTGCCCGTCAATGGGCCACGTGGTGCATTCTGAATACACTCCGACACGGAGATCTCTCATTCAAGGAGTCAATGGCAGTCATTTGTGCACTAGCAGAAAAACCCAACATGAGCATGATTTACGTGAACAAGAAGCTTGCGATATTAAGTACTTTGAGGAAAATATGCAGGTTTCTCGACTCATATCCTGACCTTTAGAAGGGATTGTTTGATGATTAGTTTAGAAAACGGCGGGACTCAGCCTGACAATGTGAATGCGATTGGTCGACAGGCTGCTGGGTGGGGCATTATACGTTTCCCCATTCATTGGCCACTGAGATTCTTATCTCCTCTGAAGTATCTCTGGGAATACTGGTTAACATCCAAAAGCGGAAGTCATGTCACAGGCTTACTTCCATTTCCCCTATAGAGAATGATAGcggcatctagtggccaaaaggctgTATTAACATTGGCAGCGCCATTAGAGGCTTCCGCCATTTTAATGTAGTACTTCCAACTTCATTTGGCgaccctgttggagtcatgtccaacgggttcatcaggagggatcagccaatcgtGAAGAAGAAAATTTGCTATTTCGAAATGGAGAttgcctcaatggcactgcccatactgtcacagacgctataatggcacagatacaaagatgagtagTCTATCTTACTCTATGATTTCCCCTGAAAACCAGATGCATCCGGTTATTACTGTCCCCACTGAAGGTGCTCCCAGTCCAGCCagccttccctctccctcctctttccctctgttgCGCAGCACCGCGGGACTAGAGCACTATACTCACTATGGCATCCACCACAGCACGGACTCTCTTAGTGCTTTTCGCCACCTTCTGTGCATCAAGTACTGGATCAACAGcCGACAAGCCCCTGCGGCCGCGGAACGTGCAGCTGACGTTGGTGGACAAGGGCCTGAGGGTAAGCTGGGAACCTCCCAACGAGCTGGACGGTCGGCCGGTGGACCGCTACAACATTGGCTACGGCAAGTCCATGAGGACACTCCGCTTCATCAAGGTGGACAAGGACAGACGGTCCAAGGTACTGGAGGATGTAGAGCCCGGAGTTCTGCACTTTCTCAAGATGAGTGCCGAGAACAAGGAGGGGATAAGCAAACCTGTGTACAGAGCAGAGACGCCAggagGTGGTGAGTGGGTCAAACTGGATGGCTTCGCAGTGGCGGACGGGGCACCTGTTAACGCATCAACTCCAGctcGTCCATCTCCTACTCCAGACATGTGGACCAGGGCTAACTCCCCTGTCGGGATCCCCGTGAGAACAGGAAGCGGATCAGTGGTTGATGGGGGGGTGCGCCCGTCAGGCCTGACCTCCTCCAAGGGGCAGCGGATCCGGAGACCCCCCCAATCATCCTCCGGCCCTCGTCAGCCAGATAGGGCCAGGGCAGGGACACCCCTGCTGGACCAGAggtcccaacaccaccaccatcacacccAGCCACAGGCTGACCAGAGAAACAGACACAACCCCAAACTAGCGTCTGAGTCCATCTATGTGGTATCACTGCAGGCACAGAGAGCCACGGGGCGGAGCGTGCCAAGCAACAGAGCCACCCTGACCAAAAAAACTCCCCCAGAGCCTGAGGAGTATGAGGCCAAAGACATCGGTGTGAGGGTCATGTCCCCTCAGTCTGTCCTCATCAGCTGGGTGGACCCGGCTATCGAGATGGAGAAGGTCCTACCTGGTGGCTCCAGacACTACACAGTGAAGTACAGGGAGAAGGGTGAGTCTGCTCGTTGGGAGTACAAGGAGACCACCCAGAGGAGGCTGCTGATAGATACCCTGTCAGCTGACGGGATGTACGAGTTCTCCGTCCGAATCTCCCAGGGAGACAACCACGGCAAGTGGAGCGTGTCCGTGTTCCAGAGGACCCCAGAATCTGCTCCCTCTGGTCCTCCGGAGAACTTTGATGTGAAGCCACTGAGAGGGAAGGGAACCGCTGTCACGGCGACCTGGGACCCGCCTGAGGAACCCAACGGGAGGATACGAGAGTACATAATGTCCTATGCTCCTGCCATGAAACCCTTTGGGATGAAGTCAGTGACATACCGCGGCAGCACCACCTCAGCCATCATAGACGGCTTCCTGCCTGGGGACCTCTACATCTTCAAGATCAGAGCCACCAACAGGAGGGGCCAGGGCCCCCAGACCAAAGCCTTTAGCGTAGCCATGCCTGGAGGCACCGCCAGCAGTGCTGCCTCCTCGCCAACTCAAGGTGGCCGTAGAACCAGCTACACCCCTTCTCAGACGTCCAAACAGGACAGTTACCGTGACGATGTCGTCAACCTCCAATTAGAAGACGTGACCAAGGAGCCGACCACACCCACTCAGACCACATCTGCCCCGCCCTCCTCCAGGCGGACACGGCCCCTCACCAAGACACGCTCCCATCACAGCATCTTCTCAGATGTGAGGGGCACGGTCAGGAACAGGGCGACCAATCAGCGACTAGGAGCCGGTACTGCTCCGGCCAGAGACaaggggagaaagacagaaacagaggatgaacaggaggaggagaacaaaacaacagaaaccactcgagacgaagaggaggagaagCTCACTAACGAAGATgtggaggagaagaaagaagCAGTGACTCAGAACAATGTTGTTCCTTCTACACCTGAGGACAGTGGCTACGTCAGAGGGAGTGGTAAAGGGAAGGATGTAGATGAGCCCTCCAGACCAAGCCTCAAAACAGAAGTTCCCTCATCAGAGGGCTCCTCATCATCTTCTAAACCCTCCTACCCTCTCCGCAAACCTCTCTCTGGCAGACGCATCAATTCTGGTCGAAGACCATTCTCCCGGACATCAGTCTCAGGGTCAGTGTCCCAGTCAAAGACACAGGATGCAGAAAAGGACAGcgcctcctcatcctcctcatcttctTCGTCCTCCAGCCCATCCCCAAACGAGGAGTCTGCAGCCATCAGGAAGGACGACACTGTCACCAACTACTCCGAGGGCAAAAAGACCTACGACCAGCCAAGTGCCACAGCGGCCAAACCCTCCACCTCAACCCCTACCCCAAACCAGGCCGTCTCAGAGCCCAAGACCGAGGCACCATCTGTGGGAAGAGGATCTGCTCTGCCGGGCCGTGGATATGGTTATGGCAGGCGGAAACCCGGGATCCTGTCTCGAGGGAATCCAAATGGCCGGGTTCTTACTGGACTCATCAAACCTGGGTCAGACTCGACTTCCGCCGGCATGTCCCAGTCCACTCTACCGACCAAAGGCAAGATCCCAGAAACATCACACACTGACGGCTCACACACTCCTAGCACACAGGACTTAACACACCACCAGGACAATAATGACTACAACGACTACAAAGTCACAGAGGCAGAGGCCACCAAAGAAGAAGAACCCACTTCCAGTTCCCGGACCATTTCCACTAAACATTCTTCTGAGGACAGGACACAggacaagagagaggagggagggaggggagacaggagagaggagcgagggagtggaaggaaagaggagggagggaggggagataggagagaggagggagggaggggggagaactACTACAACACCCCAGCTCCCCCACCTTCCAAGACACCTGCTCCCCCTGCCTCCAGGATTAACCCCTTTGTGAAACGTCACCAGAGCAGGTTTGGAACAGGGATGGGGAGCAGTAGCAGGGTGTCTTCCCCCCGCGCGGACGGGAGGGTTCCCTGGAGCAGGACAGCCTCCTCATCCTCTGTTGGGGCTGGAAGACCCATCCTGAGAGGATTCCCCTCTAGGACAGCTGCCTCGGGGGCAGCATCTGCCTCAGGGGCTTCAAGGACCTCCGCAGTGCAGGAGACCAGTGAGGATGCTAAAAAACCCTCCACCCTCTATCCGTTAAAGAATGGGGTGGGGGCTGGGGCACTTAAACCCTCTCTGCCCAACAGAAATACTGTTCTAGGTGAATCGAGGAATCCCAtcacctcctcttcttcttctttctcctcgtcctcctccaactcctcctctAGTAGTCGTAGAAACTCCAGTGAGCCCGTCCACAGAGGAAGCAGCACCAGGGAGGACAGCAGTAATGACCATAAGGAGGACTATCTCTACAAGGGGAGTAAGGAGATGTATGAGTGGAATGAGAAAGTCACAGACCCAACCACCGCCCCCAAAACTACTGCCACCACTACCACtgccaccactaccactacctcagCCCCAACTACCGCCCGCAGGGTGCCCCAGAGTAGGGCCATCGAGAGTGTGGACAGGGAAGCCACACCTGGTAGAACCAGGCCCGGTTTCATCCCCGGTTCTACGCTCCCCCGCCGTACCATTATAGGTCCCAACGGGAGGGTGCGATCTCCCCTGCTCATAAACAGGCAGACAGGTTCTAGGTTCCCGCTTAGAGCACAACCAGCACAGAGCACACGGTTAGGTTCCTCTAACACAAACACatcatcttcctcttcttcctcttcctcctctagtcTGTCGCAGCCAGATCACGGGGTTAGCGGGGCCGCTAGTGTTAGCACTGGAggctcctccccttccctctctcgccCCTCCCACAGACAGACCTCCATTGGCAGCAGCCAGGGATCTCAaggctcctcttcctcctcgtcatTCTCATCCAGAGACTCTGTGGTGGGCCAGGGTACAAGGACACGCTACCCCAGCCGGTCAGACCCCCATCTCAGGAGTAAAACCCCCAGTGGAGGCCTCAAGCCCGGTTACGGAAATGGTCATGGAAATGGTAAAAATGGCCGCCCCAATCTCACGGCGACCAGTGACAAAGAGTCCAGCACATCCAATGACAACACCAAACCTAATGGAAGAAGGTACATCACTGGGCCTGATGGAGCCAAGtggGTGTTGGACTTGGATAAGGGGGTCCTGATGAACGAGGATGGCAGGGTTCTCCAGGACTCTCAGGGCCAACCCAAGAGGGTGGTTCTGGGAGAGGACGGACGCACCATCTTTGACCACCAGGGCAGCCCATTGGTGAACCAGGAGGGCCAGGCTCTGTTTGGTCACGGACGGGAAAGCCAACCGGTGGTCAACCCCAAAGACAAGTTCCTGACTGTGGGTGGCAAACCCATCATTGGCCTGGACCAGGCTAAACCAaggaccacaaccacaaccagacCTCCTACCACGACCACACCTGAACCGACAACGCTACCAACCACCACTGAAATGTCCACAGAGGAGACTATAACCATGCCGGTGTTCCCGACCTGTCCTCCAGGAACATTTTTGATCAGGGATGATGAGGGATTCCCAATGCTGGATGCTGATGGCATCCTGGACTGTTATCCTGAAGAGGAATCCTCGGGACTGGAAACGGACTCTATGGATGAGTTGTTGTGGCAGACCACGCTGCCCCCCACgctgccccccaccaccaccacgacaGACCACCCCACCCCTGAACCAGACACCAGGCCCTTCAACAATAGCCCCTCCAATGAGTTCGACCTCACCGGGAAGAAACGCTTCACAGctcCGTATGTGAACTTCATCCAGAAGGATCCGGGCGCTCCGTGCTCGCTGACGGAGGCTCTGGAATACCTACAGGTGGACGTCCTGGAAAACCTGCTCAAGAAAGACAGCCTGGCTACTAATCAGAAACAGCCGCCCAAAAACAAGCCCCACAACATCACGGTGGTCGCCATGGAAGGCTGTCACTCATTCGTCATCCTGGACTGGGCCATCCCACTGAAGGATGACATGGTGTCAGGCTACATGGTCCACAGTGCCTCATACGATGACGTCCTTAACAACAGGTGGTCCTCCAGTGCATCCAGCGGCTCACATCTGGCTGTTGAAAACCTCAAACCTAACTCCAGGTACTACTTCAAAGTGCAGGCGAAGAATGTCTTTGGGCTGGGACCGGTCAGCGATACAATCACCTATGTCACTGAGTCAGACGACCCTCTTCTTATTGAACGACCACCTGGTGGAGAGCCTATCTGGATCCCATTTTCCTTCCGATACAACCCCCAGCACAGTGCCTGTAAGGGCAGCCAGTACGTCAAGAGGACATGGTACAGAAAGTTTGTAGGTGTGGTCCTCTGCAACTCACTGAGATACAAGATCTTCATGGGAGATGGGCTAAAAGaaacattctacagtataGCAGACACATTCGGTCATGGGGAGGACCACTGCCAGTTTGTAGACTCTTACCTAGATGGGAGGACAGGCTCCCCCAACCTCTCAATGCATCTGCCAACAGCACaagGTTACTATCGCTCATACAGGCAGGAGCCAGTGAACTTTGGACCTATCGGCCGGCGTACGCCACATCTCTTCGGAGGATGGTATGAGTGCGGGGTGCCCATCCCTGGCAAGTGGTAACACAGGGGGTCACAAAGAGTACGTCATCGAGGGCAACCCAACTCCACCCTGCTGCAGCCTTTCTCATGCTGTTACTGACCCCGCCCCCTGGAGATAAACTGTTGCTAACCACAGCAGAAAGACAACAACATTCCAAATGTATACTACTTCAGATTGAAGAGAATATAATACTTTAAACAACAATTTATATTTTCATGTATTCATTAACATGCACTTTTATAAAAGCAGTCTGTATATGAGGGAGGAAAAgcatgtacagtggcttgcgaaagtattcaccccccttggcatttgtcctattttgttgccttactacctggaattaaaatgtattttttggggggtttgtatcatttgatttacacaacatgcctaccactttgaagatgcacaatattttttattgtgaaacaaacaaaaaaatggaaAACTTGAAAATGTGCATAACAattcaaagtcaatactttgtagagccaccttttgcagcaattacagctgcaagtctcttggggtatgtctctattagctaggcacatctagccactgggatttttttgcccattcttcaaggcaaaa

Function

NR:

description
fibronectin type III domain-containing protein 1-like

GO: NA

KEGG:

id description
K24484 FNDC1; fibronectin type III domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986868.1 True 6988 mRNA 0.54 23 37652125 37733599

Neighbor

gene id symbol gene type direction distance location
drc1 drc1 coding upstream 178000 37462007 ~ 37474125 (+)
mut mut coding upstream 227936 37385172 ~ 37424189 (+)
fkbp1b fkbp1b coding upstream 267283 37365191 ~ 37384842 (+)
mfsd2b LOC106571769 coding upstream 297265 37312731 ~ 37354860 (+)
LOC110530907 LOC106571749 coding upstream 505292 36816598 ~ 37146833 (+)
LOC110529887 wtap coding downstream 59409 37793008 ~ 37801035 (+)
LOC118965681 NA coding downstream 65942 37799541 ~ 37799675 (+)
LOC110529891 LOC106571759 coding downstream 360232 38093831 ~ 38139085 (+)
LOC118965514 NA coding downstream 729936 38463535 ~ 38467848 (+)
LOC110530912 LOC106571754 coding downstream 738594 38472193 ~ 38641598 (+)
G702950 NA non-coding upstream 151422 37494356 ~ 37500703 (+)
G702916 NA non-coding upstream 217041 37434878 ~ 37435084 (+)
G702915 opn5 non-coding upstream 217357 37434522 ~ 37434768 (+)
G702913 NA non-coding upstream 218532 37433365 ~ 37433593 (+)
G702904 NA non-coding upstream 238484 37413192 ~ 37413641 (+)
G703816 NA non-coding downstream 17244 37750843 ~ 37751055 (+)
G703828 NA non-coding downstream 28950 37762549 ~ 37762789 (+)
G703831 NA non-coding downstream 31464 37765063 ~ 37765474 (+)
G703837 NA non-coding downstream 41362 37774961 ~ 37775268 (+)
G703839 NA non-coding downstream 43840 37777439 ~ 37777638 (+)
G702817 LOC106571770 other upstream 402316 37248737 ~ 37249809 (+)
G702687 NA other upstream 592902 37058345 ~ 37059223 (+)
G702415 NA other upstream 951386 36700438 ~ 36700739 (+)
G700864 NA other upstream 1747427 35904049 ~ 35904698 (+)
G700685 NA other upstream 2037459 35613164 ~ 35614666 (+)
G703835 LOC106584613 other downstream 37265 37770864 ~ 37771635 (+)
G704281 NA other downstream 492456 38226055 ~ 38229974 (+)
G705273 LOC100136012 other downstream 1022272 38755871 ~ 38756305 (+)
adgb adgb other downstream 1266897 38929456 ~ 39047229 (+)
G705853 NA other downstream 1669349 39402948 ~ 39403296 (+)

Expression


Co-expression Network