LOC110529887 (wtap)


Basic Information

Item Value
gene id LOC110529887
gene name wtap
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37793008 ~ 37801035 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985438.1
TCTCACGTTTAGCAAATTTGACAGAGCTCAGAATGACAAATGAGGAACCTCTTCCAAAGAAGGTTCGCCTCAGTGAATCTGACATGAAGACCCTGACCAGAGAGGAACTGTGTGTGAGGTGGAACCAACATGAAGCCTACGTTCAGATCCTGGAGGCAAAATATGCTGATCTGAATTCGAACGATGTGACTGGGCTGAAGGAGTCTGAGGAGAAgctgaagcagcagcagcaggaggcgTCACGCAGGGAGAACATCCTAGTCATGCGGCTCGCAACCAAGGAGCAGGAAATGCAAGAGTGTACAACCCAGATCCAGTACCTCAAGCAAGTCCAGCAACCCAGTGCCGCCCAATTGCGGTCGTCAATGGTAGACCCGGCCATCAACTTATTTTTCCTCAAAATGAAGGGAGAACTGGAACAGACTAAAGACAAACTGGAGCAGGCCCAAAATGAACTGAGTGCCTGGAAATTTACACCAGATAGCCAGACGGGGAAGAAGCTAATGGCCAAGTGCCGGATGCTGATCCAGGagaaccaggagctggggaggcAGCTGTCCCAGGGACGTATCGCCCAGTTGGAGGCAGAGCTGGCCCTGCAGAAGAAGTACAGCGAGGAGCTCAAGAGCAGCCAAGATGAGTTGAACGATTTCATCATCCAGCTGGATGAGGAAGTAGAGGGCATGCAGAGCACCATCCTGGTCCTCCAGCAGCAGCTCAGGGAGACCCGTCAGCAGCTCTCCCAGAACCCAGCTCAAGCTGCCTCTGCCGGGGCAGGCCCCAGCAGGACTTCACCCTCCGCCGAGCCCCCCAGCCAGCCCGAGCAGCCCTCCGCCCAAGCCGGGAAAGACTGCGGAAGGGTCTCCAACGGCCCAAGCAACGGCAGCTCGTCCTCCCAGAGGGGTGCGGCGACCACCCCCAGCCTGTACCGCGAGGTCAGCAGCACAGAGGAAGACTTTCCCCCGTCCCCCATGGTCTCCAGCCCCGGTGAGGGCGAGACGAAACTCTCCAACCACTCAGAGGAGGCAGCGGGTGGCCAGACTGGTGGCAGTGCAGGGGGTACAGCAGCAGGGGGGTTCGGGAGCCAGCTGAGCACAGGGTATGAGAGCGTGGACTCCCCGACGGGCAGCGAAACGTCCCTGACGCAGCACTCGAACGACACAGACTCCAACACCGACCCCCACGAAGACAAGTCTGCCCTGGTCGTCAAGGGGAACAGGACTGCGGGGTCGCGGCAGGCTCAGAACGGCCTGAGCGCGAGCAGTGGCACAGTTTTGTAA
>XM_036985437.1
GTTGAAAAACGATTTATCTGGCAAGAGCTCAGAATGACAAATGAGGAACCTCTTCCAAAGAAGGTTCGCCTCAGTGAATCTGACATGAAGACCCTGACCAGAGAGGAACTGTGTGTGAGGTGGAACCAACATGAAGCCTACGTTCAGATCCTGGAGGCAAAATATGCTGATCTGAATTCGAACGATGTGACTGGGCTGAAGGAGTCTGAGGAGAAgctgaagcagcagcagcaggaggcgTCACGCAGGGAGAACATCCTAGTCATGCGGCTCGCAACCAAGGAGCAGGAAATGCAAGAGTGTACAACCCAGATCCAGTACCTCAAGCAAGTCCAGCAACCCAGTGCCGCCCAATTGCGGTCGTCAATGGTAGACCCGGCCATCAACTTATTTTTCCTCAAAATGAAGGGAGAACTGGAACAGACTAAAGACAAACTGGAGCAGGCCCAAAATGAACTGAGTGCCTGGAAATTTACACCAGATAGCCAGACGGGGAAGAAGCTAATGGCCAAGTGCCGGATGCTGATCCAGGagaaccaggagctggggaggcAGCTGTCCCAGGGACGTATCGCCCAGTTGGAGGCAGAGCTGGCCCTGCAGAAGAAGTACAGCGAGGAGCTCAAGAGCAGCCAAGATGAGTTGAACGATTTCATCATCCAGCTGGATGAGGAAGTAGAGGGCATGCAGAGCACCATCCTGGTCCTCCAGCAGCAGCTCAGGGAGACCCGTCAGCAGCTCTCCCAGAACCCAGCTCAAGCTGCCTCTGCCGGGGCAGGCCCCAGCAGGACTTCACCCTCCGCCGAGCCCCCCAGCCAGCCCGAGCAGCCCTCCGCCCAAGCCGGGAAAGACTGCGGAAGGGTCTCCAACGGCCCAAGCAACGGCAGCTCGTCCTCCCAGAGGGGTGCGGCGACCACCCCCAGCCTGTACCGCGAGGTCAGCAGCACAGAGGAAGACTTTCCCCCGTCCCCCATGGTCTCCAGCCCCGGTGAGGGCGAGACGAAACTCTCCAACCACTCAGAGGAGGCAGCGGGTGGCCAGACTGGTGGCAGTGCAGGGGGTACAGCAGCAGGGGGGTTCGGGAGCCAGCTGAGCACAGGGTATGAGAGCGTGGACTCCCCGACGGGCAGCGAAACGTCCCTGACGCAGCACTCGAACGACACAGACTCCAACACCGACCCCCACGAAGACAAGTCTGCCCTGGTCGTCAAGGGGAACAGGACTGCGGGGTCGCGGCAGGCTCAGAACGGCCTGAGCGCGAGCAGTGGCACAGTTTTGTAA
>XM_021612539.2
GAAATTGGTGTTATTCTGTAGTGACAAAGTTAGCTAGCCTAACATGTCTGATAGCATCATGTTAACTCAGCCCGCCCCTTCAGCACTGTAGCAACTAGAGAGCTTTGATGCGCTGCTGTGGTTGCCATCGTCTCTCAGATGATGGCGGCGACACCGAATCCCTACCGTGGCGAATTCGAATAACAATAATTAAGTTATAGAAACCAATTAAAATCGGATTGTAACGTTGCATATTAGTGCTAAGGCGGTCAACACATACTGGTTTCGAATATTGAAGGAAACGGGTCCGAGCTCAGAATGACAAATGAGGAACCTCTTCCAAAGAAGGTTCGCCTCAGTGAATCTGACATGAAGACCCTGACCAGAGAGGAACTGTGTGTGAGGTGGAACCAACATGAAGCCTACGTTCAGATCCTGGAGGCAAAATATGCTGATCTGAATTCGAACGATGTGACTGGGCTGAAGGAGTCTGAGGAGAAgctgaagcagcagcagcaggaggcgTCACGCAGGGAGAACATCCTAGTCATGCGGCTCGCAACCAAGGAGCAGGAAATGCAAGAGTGTACAACCCAGATCCAGTACCTCAAGCAAGTCCAGCAACCCAGTGCCGCCCAATTGCGGTCGTCAATGGTAGACCCGGCCATCAACTTATTTTTCCTCAAAATGAAGGGAGAACTGGAACAGACTAAAGACAAACTGGAGCAGGCCCAAAATGAACTGAGTGCCTGGAAATTTACACCAGATAGCCAGACGGGGAAGAAGCTAATGGCCAAGTGCCGGATGCTGATCCAGGagaaccaggagctggggaggcAGCTGTCCCAGGGACGTATCGCCCAGTTGGAGGCAGAGCTGGCCCTGCAGAAGAAGTACAGCGAGGAGCTCAAGAGCAGCCAAGATGAGTTGAACGATTTCATCATCCAGCTGGATGAGGAAGTAGAGGGCATGCAGAGCACCATCCTGGTCCTCCAGCAGCAGCTCAGGGAGACCCGTCAGCAGCTCTCCCAGAACCCAGCTCAAGCTGCCTCTGCCGGGGCAGGCCCCAGCAGGACTTCACCCTCCGCCGAGCCCCCCAGCCAGCCCGAGCAGCCCTCCGCCCAAGCCGGGAAAGACTGCGGAAGGGTCTCCAACGGCCCAAGCAACGGCAGCTCGTCCTCCCAGAGGGGTGCGGCGACCACCCCCAGCCTGTACCGCGAGGTCAGCAGCACAGAGGAAGACTTTCCCCCGTCCCCCATGGTCTCCAGCCCCGGTGAGGGCGAGACGAAACTCTCCAACCACTCAGAGGAGGCAGCGGGTGGCCAGACTGGTGGCAGTGCAGGGGGTACAGCAGCAGGGGGGTTCGGGAGCCAGCTGAGCACAGGGTATGAGAGCGTGGACTCCCCGACGGGCAGCGAAACGTCCCTGACGCAGCACTCGAACGACACAGACTCCAACACCGACCCCCACGAAGACAAGTCTGCCCTGGTCGTCAAGGGGAACAGGACTGCGGGGTCGCGGCAGGCTCAGAACGGCCTGAGCGCGAGCAGTGGCACAGTTTTGTAA
>XM_021612538.2
AAATTGGTGTTATTCTGTAGTGACAAAGTTAGCTAGCCTAACATGTCTGATAGCATCATGTTAACTCAGCCCGCCCCTTCAGCACTGTAGCAACTAGAGAGCTTTGATGCGCTGCTGTGGTTGCCATCGTCTCTCAGATGATGGCGGCGACACCGAATCCCTACCGTGGCGAATTCGAATAACAATAATTAAGTTATAGAAACCAATTAAAATCGGATTGTAACGTTGCATATTAGTGCTAAGGCGGTCAACACATACTGGTTTCGAATATTGAAGGAAACGGGTCCGGTAAGTGTTCATTTGCGGCAGGGTTTAGCGAACACGAGTCCGCGAAAGGAAGAGGAACGCAAATTTTGCAGGAGGGAGTCTGGAGTCTCTGCTTTCTCCGCCATTTTGTGATAACAAGAAGCAGAACACGATAACCGacagAGCTCAGAATGACAAATGAGGAACCTCTTCCAAAGAAGGTTCGCCTCAGTGAATCTGACATGAAGACCCTGACCAGAGAGGAACTGTGTGTGAGGTGGAACCAACATGAAGCCTACGTTCAGATCCTGGAGGCAAAATATGCTGATCTGAATTCGAACGATGTGACTGGGCTGAAGGAGTCTGAGGAGAAgctgaagcagcagcagcaggaggcgTCACGCAGGGAGAACATCCTAGTCATGCGGCTCGCAACCAAGGAGCAGGAAATGCAAGAGTGTACAACCCAGATCCAGTACCTCAAGCAAGTCCAGCAACCCAGTGCCGCCCAATTGCGGTCGTCAATGGTAGACCCGGCCATCAACTTATTTTTCCTCAAAATGAAGGGAGAACTGGAACAGACTAAAGACAAACTGGAGCAGGCCCAAAATGAACTGAGTGCCTGGAAATTTACACCAGATAGCCAGACGGGGAAGAAGCTAATGGCCAAGTGCCGGATGCTGATCCAGGagaaccaggagctggggaggcAGCTGTCCCAGGGACGTATCGCCCAGTTGGAGGCAGAGCTGGCCCTGCAGAAGAAGTACAGCGAGGAGCTCAAGAGCAGCCAAGATGAGTTGAACGATTTCATCATCCAGCTGGATGAGGAAGTAGAGGGCATGCAGAGCACCATCCTGGTCCTCCAGCAGCAGCTCAGGGAGACCCGTCAGCAGCTCTCCCAGAACCCAGCTCAAGCTGCCTCTGCCGGGGCAGGCCCCAGCAGGACTTCACCCTCCGCCGAGCCCCCCAGCCAGCCCGAGCAGCCCTCCGCCCAAGCCGGGAAAGACTGCGGAAGGGTCTCCAACGGCCCAAGCAACGGCAGCTCGTCCTCCCAGAGGGGTGCGGCGACCACCCCCAGCCTGTACCGCGAGGTCAGCAGCACAGAGGAAGACTTTCCCCCGTCCCCCATGGTCTCCAGCCCCGGTGAGGGCGAGACGAAACTCTCCAACCACTCAGAGGAGGCAGCGGGTGGCCAGACTGGTGGCAGTGCAGGGGGTACAGCAGCAGGGGGGTTCGGGAGCCAGCTGAGCACAGGGTATGAGAGCGTGGACTCCCCGACGGGCAGCGAAACGTCCCTGACGCAGCACTCGAACGACACAGACTCCAACACCGACCCCCACGAAGACAAGTCTGCCCTGGTCGTCAAGGGGAACAGGACTGCGGGGTCGCGGCAGGCTCAGAACGGCCTGAGCGCGAGCAGTGGCACAGTTTTGTAATGTACTTTATAATAACACGTCATTTGTCTTTTTCTTTTTATACGAGACACAAACGCATAGTTGGTAAAAACAGAACTGCTGTCCAGAactttttctcctctcctttgcCTATCGTGATACCTCTTCCACAATTTTAAAGAAAATAATTGCATTGCTAAACAGGAACATTACGTGAAATGAATTAATGTATGTGCATATGACTTGAGTTTTGTATGATTCAAGCTAGATCTTTTTTTCTTTGGTCTCTTGGTTATTTGAACATGTTGCTCGATAACGTTCTTGTTTGAACTCTTGACAAACTCAAATGATCAAGCATCTGGTGTTGTAGTCATGCTCAATAAAAGTCAAACCACAGTTCACTTTAGTAGCTTTGCAATGTTAAATGATACCTTTTAGATGttgacttttattttttttaatccttGGCAAATACATTTCTGTTTGACAATGTGTGTAGTTTCTACGCGATGTACCTTGAATTCATTATTCTGACTTCCATCCTTCTCATGTACTGACCAAATATCAATAAAGACTTTTAATATG
>XM_021612537.1
AAACAGTTTAAGGCGATGCACATTTTACTTGAGATCATCCTTAAAAAGCTCAGAATGACAAATGAGGAACCTCTTCCAAAGAAGGTTCGCCTCAGTGAATCTGACATGAAGACCCTGACCAGAGAGGAACTGTGTGTGAGGTGGAACCAACATGAAGCCTACGTTCAGATCCTGGAGGCAAAATATGCTGATCTGAATTCGAACGATGTGACTGGGCTGAAGGAGTCTGAGGAGAAgctgaagcagcagcagcaggaggcgTCACGCAGGGAGAACATCCTAGTCATGCGGCTCGCAACCAAGGAGCAGGAAATGCAAGAGTGTACAACCCAGATCCAGTACCTCAAGCAAGTCCAGCAACCCAGTGCCGCCCAATTGCGGTCGTCAATGGTAGACCCGGCCATCAACTTATTTTTCCTCAAAATGAAGGGAGAACTGGAACAGACTAAAGACAAACTGGAGCAGGCCCAAAATGAACTGAGTGCCTGGAAATTTACACCAGATAGCCAGACGGGGAAGAAGCTAATGGCCAAGTGCCGGATGCTGATCCAGGagaaccaggagctggggaggcAGCTGTCCCAGGGACGTATCGCCCAGTTGGAGGCAGAGCTGGCCCTGCAGAAGAAGTACAGCGAGGAGCTCAAGAGCAGCCAAGATGAGTTGAACGATTTCATCATCCAGCTGGATGAGGAAGTAGAGGGCATGCAGAGCACCATCCTGGTCCTCCAGCAGCAGCTCAGGGAGACCCGTCAGCAGCTCTCCCAGAACCCAGCTCAAGCTGCCTCTGCCGGGGCAGGCCCCAGCAGGACTTCACCCTCCGCCGAGCCCCCCAGCCAGCCCGAGCAGCCCTCCGCCCAAGCCGGGAAAGACTGCGGAAGGGTCTCCAACGGCCCAAGCAACGGCAGCTCGTCCTCCCAGAGGGGTGCGGCGACCACCCCCAGCCTGTACCGCGAGGTCAGCAGCACAGAGGAAGACTTTCCCCCGTCCCCCATGGTCTCCAGCCCCGGTGAGGGCGAGACGAAACTCTCCAACCACTCAGAGGAGGCAGCGGGTGGCCAGACTGGTGGCAGTGCAGGGGGTACAGCAGCAGGGGGGTTCGGGAGCCAGCTGAGCACAGGGTATGAGAGCGTGGACTCCCCGACGGGCAGCGAAACGTCCCTGACGCAGCACTCGAACGACACAGACTCCAACACCGACCCCCACGAAGACAAGTCTGCCCTGGTCGTCAAGGGGAACAGGACTGCGGGGTCGCGGCAGGCTCAGAACGGCCTGAGCGCGAGCAGTGGCACAGTTTTGTAATGTACTTTATAATAACACGTCATTTGTCTTTTTCTTTTTATACGAGACACAAACGCATAGTTGGTAAAAACAGAACTGCTGTCCAGAactttttctcctctcctttgcCTATCGTGATACCTCTTCCACAATTTTAAAGAAAATAATTGCATTGCTAAACAGGAACATTACGTGAAATGAATTAATGTATGTGCATATGACTTGAGTTTTGTATGATTCAAGCTAGATCTTTTTTTCTTTGGTCTCTTGGTTATTTGAACATGTTGCTCGATAACGTTCTTGTTTGAACTCTTGACAAACTCAAATGATCAAGCATCTGGTGTTGTAGTCATGCTCAATAAAAGTCAAACCACAGTTCACTTTAGTAGCTTTGCAATGTTAAATGATACCTTTTAGATGttgacttttattttttttaatccttGGCAAATACATTTCTGTTTGACAATGTGTGTAGTTTCTACGCGATGTACCTTGAATTCATTATTCTGACTTCCATCCTTCTCATGTACTGACCAAATATCAATAAAGACTTTTAATATGGTA

Function

symbol description
wtap Acts upstream of or within regulation of apoptotic process. Predicted to be located in cytoplasm and nuclear speck. Predicted to be part of RNA N6-methyladenosine methyltransferase complex. Predicted to be active in nucleus. Is expressed in head. Orthologous to human WTAP (WT1 associated protein).

NR:

description
pre-mRNA-splicing regulator WTAP-like isoform X1

GO: NA

KEGG:

id description
K22824 WTAP; pre-mRNA-splicing regulator WTAP

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985438.1 False 1280 mRNA 0.59 8 37793008 37800489
XM_036985437.1 False 1281 mRNA 0.59 8 37793210 37800489
XM_021612539.2 False 1545 mRNA 0.56 8 37793270 37800489
XM_021612538.2 False 2228 mRNA 0.50 8 37793271 37801032
XM_021612537.1 True 1848 mRNA 0.51 8 37793730 37801035

Neighbor

gene id symbol gene type direction distance location
LOC110530909 LOC106571774 coding upstream 59409 37652125 ~ 37733599 (+)
drc1 drc1 coding upstream 318883 37462007 ~ 37474125 (+)
mut mut coding upstream 368819 37385172 ~ 37424189 (+)
fkbp1b fkbp1b coding upstream 408166 37365191 ~ 37384842 (+)
mfsd2b LOC106571769 coding upstream 438148 37312731 ~ 37354860 (+)
LOC110529891 LOC106571759 coding downstream 292796 38093831 ~ 38139085 (+)
LOC118965514 NA coding downstream 662500 38463535 ~ 38467848 (+)
LOC110530912 LOC106571754 coding downstream 671158 38472193 ~ 38641598 (+)
grm1a LOC106607995 coding downstream 1038961 38839996 ~ 38896580 (+)
LOC110529894 LOC106571778 coding downstream 1095812 38896847 ~ 38923455 (+)
G703826 sod2 non-coding upstream 312 37782204 ~ 37792696 (+)
G703841 NA non-coding upstream 13778 37779012 ~ 37779230 (+)
G703839 NA non-coding upstream 15370 37777439 ~ 37777638 (+)
G703837 NA non-coding upstream 17740 37774961 ~ 37775268 (+)
G703831 NA non-coding upstream 27534 37765063 ~ 37765474 (+)
G703860 NA non-coding downstream 16872 37817907 ~ 37821054 (+)
G704127 NA non-coding downstream 114739 37915774 ~ 37916003 (+)
G704149 NA non-coding downstream 132461 37933496 ~ 37933713 (+)
G704150 NA non-coding downstream 132757 37933792 ~ 37934038 (+)
G704151 NA non-coding downstream 133081 37934116 ~ 37934383 (+)
G703835 LOC106584613 other upstream 21373 37770864 ~ 37771635 (+)
G702817 LOC106571770 other upstream 543199 37248737 ~ 37249809 (+)
G702687 NA other upstream 733785 37058345 ~ 37059223 (+)
G702415 NA other upstream 1092269 36700438 ~ 36700739 (+)
G700864 NA other upstream 1888310 35904049 ~ 35904698 (+)
G704281 NA other downstream 425020 38226055 ~ 38229974 (+)
G705273 LOC100136012 other downstream 954836 38755871 ~ 38756305 (+)
adgb adgb other downstream 1199461 38929456 ~ 39047229 (+)
G705853 NA other downstream 1601913 39402948 ~ 39403296 (+)
G706274 NA other downstream 2296871 40097906 ~ 40102291 (+)

Expression


Co-expression Network