LOC110530910 (LOC106571760)


Basic Information

Item Value
gene id LOC110530910
gene name LOC106571760
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37859257 ~ 37879878 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614211.2
CACACCCTGGTGTCCATGGAAACGCCGACGCGGAGCTCCAAGAGTAGCAGACTGTTCGGGGAAGAGGAGGAACAGCGCCTCCCATCCAGATCCCCTAGAAGGAGCCAAAGGGTCACCTCTGTGCCCCAGAAGTTTACTAATGTGACAACCCCAGATAAGAAAGTGTCTCAGAGAATTGGTCTGCGATTGAGAAACCTCCTCAAACTGCCAAAAGCACACAAATGGTGCATCTACGAGTGGTTTTACTCTAACATAGACAGACCTTTATTTGAAGGGGACAATGACTTCTGCCTGTGTTTGAAAGAGTCCTTTCCTAACCTGAAGACCAGGAAGTTGATCCGTGTGGAGTGGGGGACAATCAGGAGACTGATGGGAAAACCCAGACGGTGTTCATCTGCATTCTTTTCAGAGGAGCGGACTGCACTGGGGCAGAAGAGGCAGAAGATGCGTCTGCTGCAGCAGAGGAAGCTTGCCGACGTGTCACACTGCAAAGACCTCCCTGATGAGATTCCCCTGCCGCTTGTCATAGGAACCAAAGTCACTGCTCGTCTCAGGGGAGTCCATGACGGCCTGTTCACTGGGCAGATTGATGCTGTGGATACAGGCGCTGCCACTTACCGTGTGACCTTTGACCGGAATGGGCTGGGCACACACACTGTGCCTGACTACGAAGTGTTGAGTAACGAGCCTAACGAGACCATGCCCATCTCAGCCTTTGCCCAGAAACAGAGACCCTCCCGCTTCCAGAACTTCATGACCCCACCTAGGGAAACTTACCCCTCTGCCACCACACCCGTCCTCATGgacaatgaccccctCATCAGCCAGTCTCCATGGAAAAGCAAACTCTCCGGAGCTGAAGGGGATACACTCGGCGGATTCCCTGTCAAGTTCCTCGTTCAAGTGACGAGGCTTTCCAAGATCCTTATGATCAAGAAGGAACACATCAAGCACTTGAAAGATATGAACTCAGAGGCTGAAAAACTGAAGTCGTACTCAATGCCTATAGGCCTGGAGTTCCAGAAGCGGTATGCCACCACAGTCCTGGAGCTGGAGCAGCTCAATAAGGATCTGAACAAGGTGCTGCATGAGGTCCAGCAGTTCTGCTGCGAGCTGGCCCCAGATCAGGGCATGGCGCCTGCAGACCGGCCCACAGAGCTGCGTCAGCACTGTGAGGAAGAGGCCAAGGAGATAGTGCAGCAGACCAACTCCCTCCGCGACGACCAGCAGTGTGTTTCTAACTCCAGCCTCACACACCTCATCTCAGGCCTCACCGCCTTGTTGCTTCAGATCAAGTGTCTGGCTGAGGGAGGAGACCTGAACTCCTTTGAATTTAAATCACTGATGGACTCTCTGAATGACATAAAGAGCTCAATAGACCCCTCCAACCTCAGTTGCTTCCAGAACAACGTCGAGATCCACGTAGCACACATCCAGAGTGGCCTGAGTCAGCTGGGAAACCTGCATGCCTTTGCAGCCAACAACACCAACACGGTCTGAAGCCGGCATCATTACCACACAGAGAGCAGCCTGGTCAGCACCAACTAAgtggaacatacacacacacaccatctcgaATGACTGAAAGAAAATATGTCCTTTGTGGATCCCCTAACTTCCCTCCAAGAAAGGCCCCACTGAAATGATCTGGTTCAACATGTATTTTTTAGGTTGTGGGGAAATATCCAGATTTGTATCAGTCTGTCGTCCACTTTTATTGTGGATGTCTTTTGAAAATGATTTGTTTACTATAATGAAAACTGACATTTTAATGTAAAAAAATTGCCCTGGTCTCTCAACTAGATTTTGGTCATTGCGGGAATTCACATACATTTCCTGTTGTAGATGATTCTATAGTCTCATGGGCCAGACAGTACGTTAAACAGTTTCTATAATaatctatatttatttatttttgagtgATATAACAATTTACCATTTGGAGCTTCCCTTTGAGTCAATGTTTTGTGTTCCTTTACTCAACTGGTAGTAAGCACAGGGGAGGCTAAagaatgttttgtacattttctttattgtgGATATATGTAGAATGCCTTTATGATTACTAGGATTTATCATCAACATTTCTGTAACATACTCAAAGATGGCTTTTGTAATTTTGTGTGCACTGAAGAGATTTTTGTAAAAAGAGGTTTGACAGTCTCGAACAGGGCATTGCTGTTGCTGAAAGCTCACATCAGGCCTACATCACTGATGTAACCAAATTTCAAACACAAAACTGAGTTGGTAAAGTTTGTTACCAGAATTTCTCCATTTCACAATTGGTTTTGTAAATCTGTATATGGAAATGCCCCAGGGCAATTGTAAATATTCCTTGCTGTCATTTTGTATTAAACATATAGCAAAGCAAACTGATTACATGCATTTGTACACAGTGCTGGTACATTAAATGTCGTATAT

Function

NR:

description
LOW QUALITY PROTEIN: protein lin-9 homolog

GO: NA

KEGG:

id description
K21773 LIN9; protein lin-9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614211.2 True 2421 mRNA 0.47 13 37859257 37879878

Neighbor

gene id symbol gene type direction distance location
acbd3 LOC106571761 coding downstream 7413 37817872 ~ 37851844 (-)
sod2 sod2 coding downstream 66529 37782174 ~ 37792728 (-)
LOC110530908 otof coding downstream 232297 37474229 ~ 37626960 (-)
opn8a LOC106608050 coding downstream 402322 37425738 ~ 37456935 (-)
LOC110529880 LOC106571768 coding downstream 497335 37355096 ~ 37361922 (-)
LOC110530911 parp1 coding upstream 25292 37905170 ~ 37921411 (-)
LOC110531088 NA coding upstream 50240 37930118 ~ 37931963 (-)
LOC110529892 LOC106571758 coding upstream 335967 38215845 ~ 38260820 (-)
LOC100136309 LOC100136309 coding upstream 405025 38284903 ~ 38302289 (-)
LOC110529893 LOC106571757 coding upstream 450815 38330693 ~ 38387308 (-)
G704072 NA non-coding downstream 45052 37813997 ~ 37814205 (-)
G704071 NA non-coding downstream 45652 37813067 ~ 37813605 (-)
G704061 NA non-coding downstream 55010 37804024 ~ 37804247 (-)
G704058 NA non-coding downstream 56894 37802048 ~ 37802363 (-)
G704057 NA non-coding downstream 57693 37801335 ~ 37801564 (-)
G704094 NA non-coding upstream 9024 37888902 ~ 37889213 (-)
G704105 NA non-coding upstream 17796 37897674 ~ 37898270 (-)
G704114 NA non-coding upstream 23342 37903220 ~ 37903437 (-)
G704129 NA non-coding upstream 36150 37916028 ~ 37916501 (-)
G704154 NA non-coding upstream 54874 37934752 ~ 37935205 (-)
G701618 LOC106571560 other downstream 1941082 35900623 ~ 35918175 (-)
LOC110529865 LOC106571568 other downstream 2153944 35633473 ~ 35705333 (-)
G701454 NA other downstream 2269380 35582998 ~ 35589877 (-)
G704702 NA other upstream 157847 38037725 ~ 38038346 (-)
G704874 NA other upstream 433611 38313489 ~ 38313803 (-)
G706683 stxbp5 other upstream 1339766 39219644 ~ 39226313 (-)
slc22a16 LOC106571810 other upstream 2077083 39956961 ~ 40017167 (-)
G709272 NA other upstream 4839893 42719771 ~ 42720699 (-)

Expression


Co-expression Network