LOC110530911 (parp1)


Basic Information

Item Value
gene id LOC110530911
gene name parp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37905170 ~ 37921411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110530911
ATGCGCGGCTCCAGCAGCACGCCAACAccgcctcggggacgacccggagggcgaggtgcagggcaATCCGGACAGAGACGGTGCAGCATAgaagggtccaacacgtcctcctctggaacccagcatctctcctccgtgCCGTACtgctcccagtccacgagaccacCCGGTcgtggccagctgcgacagagcctgggcgcaaacccagtcTCTGGTGGCAAAGCTAgagctgcgatgcagtgccatagaccactgcgccacccgggaggcctcACTGACCTTATCAATGACCCTGTAGGCCCTGAGCTCCCCGGCTGGACTCTGCTGACCCCCTCTGCTGATGGGGTTGACGCAAAGGGTGGGGCAAAAGGAGAGAAGACTCTGAATGACTTTGCAGTGGAGTATGCCAAGTTCAACAGCAGCACATGCAAAGAGTGTGAGGAAAAAATTGAAAAGTTTAAAATCCGTGTGTTTAACAAGACCGTGGACCCAGAGAAGCCCCAGCTTGGGTTGATACACCGCTGGTACCATACGGCCTGCTTCGTGGGTCTTCAAAGCAGAGTACAGCGCTGCCCAGCTCAAAGGCTTCAACACACTCAGGGGAAGACAAGGAGCTCAAGATGAGGCTGCCTGCCATTAAATCTGAAGGGACagacaacttttttttttcagGGACAGCCCTTATTTCCAAATTTGACATCTTTGATCTCCTAGAGGAGATGGAAGGAGTCTGGCGTGCGTGTCGTCTCAGAGGACTTCCCTCACAGACATCAAGTCATCTGGCAAGGCTATGCAGGAGCTGGTCTCCCTGAACACCATCTACACCTGGAGGACAGAGGTCAAACTAGAGACCCATGCTACAGTAGTAGCCTCCAAGTCTGGAGCCATGGCTGCCAAGAGCACTAGGAAGGTAAGGAATCGGATGCCAGTAAAGAAGATGAAACTGACTGAAAGGAGGGGCAGCAGTGGACCCAGATTCTGGTCTAGAGAACAGTGCTCACGTCCTGGAGCAAAACGACAAGATCTTTAGCGCTATGCTGGGTCTGGTGGACATCGTCAGGGGAACCAACTACAAACTGCAGCTGCTGGAGGACGATGTTCAGAAACGGGTGccactttctcGCTCCTGGGGCAGAGTGGGCACCACCATCGGGGGGCAATACGCTGGATAAGTTCCATGAGAAGAACTCTACCATGGACAACTTCCTTGGTGTGTATGAAGAGAAGACAAGCAACACCTGGGGTTCTTCCCACTTCACCAAGTACCCCAACAAATTCTACCCTCTGGCAATCGACTATGGACAGCATATCTTCAGAATCGTTAGGGAGGGAGAGTACCAGGGGTACTGCCCTTTCAAGGATCTGCCCAATCGTCAGCTACTGTTCTCGTGCCACCAACTATGCTGGTATCCTGTCTCGGGGTCTGCGCATCGCCCTGCCAGAGGCCCCCGTGATGGATTACATGTTTGGCAAAGGTGTGTACTTTGCAGACATAGTGTCCAAGTTCGCCAACTACTGCCACACCGCCCAGTCCAACCCTACTGGCCTCATTCTACTGAGAAAAGTTGCCCTCTGAAACagGCATGAACGTAAGAAGGCCCCGCACATCACAAAACTACCCAAGGGTAAACCAAGTGTGAAAGGTTTGGGTAGAAATGCCCCAGATTCTAGTGCCATTGTCACTTTAGACGGGGTGCAAGTGCCTGTGGGAAAAGGAACCAACACCAACATTGAAGTCTGCTGTACAACGAGTATCCTTTGCTTCCTCTGA

Function

symbol description
parp1 Predicted to enable NAD+ ADP-ribosyltransferase activity and protein ADP-ribosylase activity. Predicted to be involved in double-strand break repair and protein poly-ADP-ribosylation. Predicted to act upstream of or within protein ADP-ribosylation. Predicted to be located in chromosome and nucleus. Predicted to be active in nucleolus. Human ortholog(s) of this gene implicated in several diseases, including arthritis; bacterial meningitis; neurodegenerative disease (multiple); stomach carcinoma; and type 2 diabetes mellitus. Orthologous to human PARP1 (poly(ADP-ribose) polymerase 1).

NR:

description
PREDICTED: poly [ADP-ribose] polymerase 1

GO:

id name namespace
GO:0006471 protein ADP-ribosylation biological_process
GO:0005634 nucleus cellular_component
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0051287 NAD binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110530911 True 1771 mRNA 0.54 12 37905170 37921411

Neighbor

gene id symbol gene type direction distance location
LOC110530910 LOC106571760 coding downstream 25292 37859257 ~ 37879878 (-)
acbd3 LOC106571761 coding downstream 53326 37817872 ~ 37851844 (-)
sod2 sod2 coding downstream 112442 37782174 ~ 37792728 (-)
LOC110530908 otof coding downstream 278210 37474229 ~ 37626960 (-)
opn8a LOC106608050 coding downstream 448235 37425738 ~ 37456935 (-)
LOC110531088 NA coding upstream 8707 37930118 ~ 37931963 (-)
LOC110529892 LOC106571758 coding upstream 294434 38215845 ~ 38260820 (-)
LOC100136309 LOC100136309 coding upstream 363492 38284903 ~ 38302289 (-)
LOC110529893 LOC106571757 coding upstream 409282 38330693 ~ 38387308 (-)
trnal-uaa-3 NA coding upstream 518787 38440198 ~ 38440280 (-)
G704114 NA non-coding downstream 1733 37903220 ~ 37903437 (-)
G704105 NA non-coding downstream 6900 37897674 ~ 37898270 (-)
G704094 NA non-coding downstream 15957 37888902 ~ 37889213 (-)
G704072 NA non-coding downstream 90965 37813997 ~ 37814205 (-)
G704071 NA non-coding downstream 91565 37813067 ~ 37813605 (-)
G704154 NA non-coding upstream 13341 37934752 ~ 37935205 (-)
G704689 NA non-coding upstream 102121 38023532 ~ 38023778 (-)
G704696 NA non-coding upstream 108188 38029599 ~ 38029849 (-)
G704697 NA non-coding upstream 108608 38030019 ~ 38030248 (-)
G704701 NA non-coding upstream 114946 38036357 ~ 38036719 (-)
LOC110529880 LOC106571768 other downstream 543577 37355096 ~ 37361922 (-)
G701618 LOC106571560 other downstream 1986995 35900623 ~ 35918175 (-)
LOC110529865 LOC106571568 other downstream 2199857 35633473 ~ 35705333 (-)
G701454 NA other downstream 2315293 35582998 ~ 35589877 (-)
G704702 NA other upstream 116314 38037725 ~ 38038346 (-)
G704874 NA other upstream 392078 38313489 ~ 38313803 (-)
G706683 stxbp5 other upstream 1298233 39219644 ~ 39226313 (-)
slc22a16 LOC106571810 other upstream 2035550 39956961 ~ 40017167 (-)
G709272 NA other upstream 4798360 42719771 ~ 42720699 (-)

Expression


Co-expression Network