LOC110531088


Basic Information

Item Value
gene id LOC110531088
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37930118 ~ 37931963 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474628.2
ACCACTGTTTTGACAGCCAAGGAGAAGAGATTGTCATTGAATAGACTAGTGATACCTGTGTGGTTATGagcttttgggggggggggatactggacacaaacacacatgtctCACAGCAAGGTCGATTGTCATCACAATGGATTAATGTCTGAGGAGCTGCAGGGAAAAGACAGCGGAGCTTGCTACACTTACCGCTCTGTCAGAGCAAGtccggaagagagagagaaaagggaaaagagagcgagaaagacggGGGAATGCACAGCACAGGACATGGGTGACTAACTAAACCCACTCATACAGAACGAGAACCTTGGCTGATCTTTACAAAAATCAGTGAGAGCAAGGGAATGCAAAGCCAGGGCCAGGAGGAACCTTCTCTGTTCTCCTGTCTCTTCTCCACTTCCCCAAAAGCAACCGAGAGCCATTTTTCAAGGGGGAAATGATTAAGGAGGAAGTGAGAAGATGAGGTTTGGAGAGTCTGGAGATTCTCACGCTTCAGGTAGAAACTTCTACCTATTCTGATTGGCACAGTTGACGTTGGGTTTTGAGAACTTTAGCTCTGAATATAAATGGGGAAGCGACAGCCAAAAAAGAGGAATCTAAGGCATATTTTTAAGTGAATCAGGCGATACAAATTGTGACAATGCACATACTGTATTATCAACAGACAGAATGACAGTGAGGTAGATAGAATGAAAGGGAGTGAGTGAGATTGAAACAGAGAATGAAAAAGAGAGTAAGACGGAGTGAGTGAAAGTAAGATGAAGAGAAAGAAagtgttaaagagagagagaggttgaagagagtcagagagagagaccagttataTGGACTTCAGACTCCCACAGGCATAGAATCACAACCAGACTCAccgacagactgacagacagagactgaAAGAGACTCACAGGCAGATACTCACAGGCAGAGACTCACAGGCagagactcacagacacacagagactgaaaGAGACTCGCAGGCAAGAGACTCACAGGCAAGAGACTCACAGGCAAGGGACTCACAGACACACCGACAGACTCACAGACAGAGCATGAATCCCCCTGCTGGAACCTCATGGCTACTACACCTATCACAAGCTGCCCAATGAACAGTGCACAAACAGAACCAAACTAACCAGAAAGACATGTAGATTATACATGCTTTGACAATTAGTCATATATCTGGAGCTACATTTATTCAGAATCTAGACGTAGTCACCCCACCACATCAAAAGAATACCATATCTTCATATTTCCCAAATTAAAAGAAGTACAGCCAACACTCAATTCCATCTGGAATGAATGACCCCTATAAGAATGGTTCTATCTGACCTACAAAGTCCCCAACCTCTGCCTGCTTATCCCTCCCTCATCTGTCTTTAGTGCAACAACTCctgctgacctctgacctctgtgttCCCATCTCCATTAGAGGGCTTTAATACATTGATGGTGCTTCTGCTGCTCTGGCCTTCCTGGGGCTTAGGCTACTGTGCATTTTGAATattgtgtgtggagagagatggTGCTTTGCTTTCAGACTTATTGTACTGCCATACATTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474628.2 True 1566 mRNA 0.45 3 37930118 37931963

Neighbor

gene id symbol gene type direction distance location
LOC110530911 parp1 coding downstream 8707 37905170 ~ 37921411 (-)
LOC110530910 LOC106571760 coding downstream 50240 37859257 ~ 37879878 (-)
acbd3 LOC106571761 coding downstream 78274 37817872 ~ 37851844 (-)
sod2 sod2 coding downstream 137390 37782174 ~ 37792728 (-)
LOC110530908 otof coding downstream 303158 37474229 ~ 37626960 (-)
LOC110529892 LOC106571758 coding upstream 283882 38215845 ~ 38260820 (-)
LOC100136309 LOC100136309 coding upstream 352940 38284903 ~ 38302289 (-)
LOC110529893 LOC106571757 coding upstream 398730 38330693 ~ 38387308 (-)
trnal-uaa-3 NA coding upstream 508235 38440198 ~ 38440280 (-)
LOC110530913 NA coding upstream 855550 38787513 ~ 38801952 (-)
G704129 NA non-coding downstream 13617 37916028 ~ 37916501 (-)
G704114 NA non-coding downstream 26681 37903220 ~ 37903437 (-)
G704105 NA non-coding downstream 31848 37897674 ~ 37898270 (-)
G704094 NA non-coding downstream 40905 37888902 ~ 37889213 (-)
G704072 NA non-coding downstream 115913 37813997 ~ 37814205 (-)
G704154 NA non-coding upstream 2789 37934752 ~ 37935205 (-)
G704689 NA non-coding upstream 91569 38023532 ~ 38023778 (-)
G704696 NA non-coding upstream 97636 38029599 ~ 38029849 (-)
G704697 NA non-coding upstream 98056 38030019 ~ 38030248 (-)
G704701 NA non-coding upstream 104394 38036357 ~ 38036719 (-)
LOC110529880 LOC106571768 other downstream 568525 37355096 ~ 37361922 (-)
G701618 LOC106571560 other downstream 2011943 35900623 ~ 35918175 (-)
LOC110529865 LOC106571568 other downstream 2224805 35633473 ~ 35705333 (-)
G701454 NA other downstream 2340241 35582998 ~ 35589877 (-)
G704702 NA other upstream 105762 38037725 ~ 38038346 (-)
G704874 NA other upstream 381526 38313489 ~ 38313803 (-)
G706683 stxbp5 other upstream 1287681 39219644 ~ 39226313 (-)
slc22a16 LOC106571810 other upstream 2024998 39956961 ~ 40017167 (-)
G709272 NA other upstream 4787808 42719771 ~ 42720699 (-)

Expression


Co-expression Network