XLOC_025786 (si:dkey-114l24.2)


Basic Information

Item Value
gene id XLOC_025786
gene name si:dkey-114l24.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 55288200 ~ 55290637 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050660
GCACACCGAATCATCACTCACGGTCAGAGTTTCTGAGAAAGAGGACAAGATGCGGGCAGTTTTATCTCTGCTGTTCGTAACTCTGTGTTCAAACAGTGCCTTTACGTCCCCGCTGAAGACTGGTCAAGCTGGAGAAAACCTGGTGTCCAAGGATGAAGTGAACATCCTGATGTATGGCGTGCTGCAGTTTAGTGAATCCCTGCACCACATGTACCAGAGCACAGAGGCCAGACTGGCCCGCGTCATGACAGCCGTGAGCCGAACTGAGAGCGAGGTGAAGAAACTAGGCTACGACACAGAGGCCGCGGCACAAACCAAACAACAGATCAAAGAGAAGCTTCAGCTCATCAAGGCTCAGACGAAAGCGCTGCAGATTCAGGTCCAAGAGAACAGAGGTAAAGTCACCAGGGTAGAGCTGGAAGAGGCACAGCTGAAGAAAAAACTCCACAGCATGGAGGAAAACCTGAACAGCTCCGTCTCAGACACCTTCAAGGGCAAACCActtaaaaatatctttatcaGGGAGGACTTGATGAAGTGGACACAAGAACAGAAACTCAAATTGCAGAATCAAAACCAGCAGATGTCTGATTTACAGAAACTGAATATGGTGTGACCACTAAAATCAGCTATGAGGAAGAAGCACAATCCTGATCAACACTCCATTCCCGGCACTGCAGATGGATCTCAGAAATATAACACCGATGACAATGATGATTGTTTTTCACACAAGTTGGGTCTCTTTCAGAAACATCAGCAGAAGAGAATCTCTAAAACATAAAATTCCCAATCACAGACACCATTTGTCAAATATAAAGCTACATTGTACCATTTTATACATAATGATCATTATATTTGTTTGGGTTTGTTGTTAGTAACTTATACTGAAATACTGAAATATAATAACTTATAACTGAAAAAATGTAACTGTTGTGTTAAGAAATCAATACTGTTATAgtgtaaactttatttattaacagaataaaaatctgtgtttttc
>TCONS_00050661
ACACCGAATCATCACTCACGGTCAGAGTTTCTGAGAAAGAGGACAAGATGCGGGCAGTTTTATCTCTGCTGTTCGTAACTCTGTGTTCAAACAGTGCCTTTACGTCCCCGCTGAAGACTGGTCAAGCTGGAGAAAACCTGGTGTCCAAGGATGAAGTGAACATCCTGATGTATGGCGTGCTGCAGTTTAGTGAATCCCTGCACCACATGTACCAGAGCACAGAGGCCAGACTGGCCCGCGTCATGACAGCCGTGAGCCGAACTGAGAGCGAGGTGAAGAAACTAGGCTACGACACAGAGGCCGCGGCACAAACCAAACAACAGATCAAAGAGAAGCTTCAGCTCATCAAGGCTCAGACGAAAGCGCTGCAGATTCAGGTCCAAGAGAACAGAGGTAAAGTCACCAGGGTAGAGCTGGAAGAGGCACAGCTGAAGAAAAAACTCCACAGCATGGAGGAAAACCTGAACAGCTCCGTCTCAGACACCTTCAAGGGAGGACTTGATGAAGTGGACACAAGAACAGAAACTCAAATTGCAGAATCAAAACCAGCAGATGTCTGATTTACAGAAACTGAATATGGTGTGACCACTAAAATCAGCTATGAGGAAGAAGCACAATCCTGATCAACACTCCATTCCCGGCACTGCAGATGGATCTCAGAAATATAACACCGATGACAATGATGATTGTTTTTCACACAAGTTGGGTCTCTTTCAGAAACATCAGCAGAAGAGAATCTCTAAAACATAAAATTCCCAATCACAGACACCATTTGTCAAATATAAAGCTACATTGTACCATTTTATACATAATGATCATTATATTTGTTTGGGTTTGTTGTTAGTAACTTATACTGAAATACTGAAATATAATAACTTATAACTGAAAAAATGTAACTGTTGTGTTAAGAAATCAATACTGTTATAgtgtaaactttatttattaacagaataaaaatctgtgtttttctaagtac

Function

GO:

id name namespace
GO:0019216 regulation of lipid metabolic process biological_process
GO:0070328 triglyceride homeostasis biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-512 Predicted to act upstream of or within regulation of lipid metabolic process and triglyceride homeostasis.

Ensembl:

ensembl_id ENSDARG00000097571

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050660 False 1000 mRNA 0.42 4 55288200 55290630
TCONS_00050661 True 976 mRNA 0.42 4 55288202 55290637

Neighbor

gene id symbol gene type direction distance location
XLOC_025785 hbbe1.3 coding upstream 156148 55131289 ~ 55132052 (+)
XLOC_025784 hbbe1.2 coding upstream 164761 55122662 ~ 55123439 (+)
XLOC_025783 hbbe1.1 coding upstream 173326 55114097 ~ 55114874 (+)
XLOC_025782 si:ch211-5k11.8 coding upstream 182234 55105066 ~ 55105966 (+)
XLOC_025781 hbaa1 coding upstream 187264 55100045 ~ 55100936 (+)
XLOC_025787 CT583658.1 coding downstream 8406 55299043 ~ 55299158 (+)
XLOC_025788 NA coding downstream 95578 55386215 ~ 55387657 (+)
XLOC_025789 NA coding downstream 191483 55482120 ~ 55488241 (+)
XLOC_025790 NA coding downstream 356236 55646873 ~ 55654264 (+)
XLOC_025791 FP326652.1 coding downstream 808619 56099256 ~ 56107909 (+)
XLOC_025429 BX649540.1 misc upstream 25039164 30248739 ~ 30249036 (+)
XLOC_025776 NA non-coding upstream 451683 54834509 ~ 54836517 (+)
XLOC_025769 NA non-coding upstream 951561 54332726 ~ 54336639 (+)
XLOC_025768 NA non-coding upstream 984576 54289678 ~ 54303624 (+)
XLOC_025767 NA non-coding upstream 1004015 54283767 ~ 54284185 (+)
XLOC_025766 NA non-coding upstream 1016855 54270703 ~ 54271345 (+)

Expression


Co-expression Network