LOC110529892 (LOC106571758)


Basic Information

Item Value
gene id LOC110529892
gene name LOC106571758
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 38215845 ~ 38260820 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612548.2
AGCTactgagcagacagacagataaggagagacagggggagtggaagaaagggagagagagagaagtaagagCAAGAGGCATGGGGGGAGCCAGGTgagatcagagagaggagagtgagggagaggaaagaTAAAGGATTAGGTGATAGTAGTCAGCGTGTTAGTGCCTGTACAGGTGAGTGGACTCTGAATAGGATTTCCCTTCAAGCTACAGGTGGAGAAAGCCTGATACAGGACCAACTGGATTTACAGAGTGCTGGAGGAAGGTCTTGAACCTCATGTGAAGATCCATGTGGTCACCCTAGCAGCTACACAGACTCACCCTCcgtcctacccctcctctcttcacAGACTACAGCCATGGAGTGCCAGGTGGAGGAGCTGAGGCAGCAGCTGGAGAAACAGACCCTAGTCAACCAGGAGCTGCAGAACCACAACAAGGACCTGGAAAGAAGACTGCAGGAGACGGAGAAGTTGCTGCAGGAGCTTCAGAGTCATTACCATGACCTGGACTTCCCTGATCAGAGGATCAGTAATGAAGGGGGACTTGTGGTCAGGAAGAGCAGAGTGGCTGTCATGGCCCCTGAGCCAATCCCAGAGGATCAGCAGGAGATCATAAAGACTAAAGTCAAGAAGACCGTCAGTGAGACGAGTCTGATCATCAAGGCCATCCAGAAGAATGACTTCCTGAGTCGCCTTGACGATGAGCAGATCACCATGATGGTGGAGCTCCTGGTGGCGATCGACTTCAAACCAGGAAATGATGTAATCAAGGAGGGCACTGAGGGAGACAGCATGTACATCGTAGCAGCGGGTGAGCTCCTTGTCAGTCAAGCAGATTGTAACCTTCGAACCCTgacctgtggggatgtttttggaGAGTTGGCTATTCTGTATAACTGCAAACGCACAGCCACAGTCAAAGCCAAGACAGTGGTGCGTCTGTGGTTTATGGAGAGACAGATGTATAGAACCATCATGACCAACAAGTCCAAGAAGAAACGTGAACAGCTAATGGGCTTCCTAAAAACGTCTCGGACTCTGAAGGCCCTAAATGACAGTCAGCTCTCTAAGATAATTGACTCCATGGAGGAGGTGAAGTACCAGAACAATGATGTCATTGTGCGTGAGGGGGCGGAGGGCAACACGTTCTACATCATTCTCAAAGGAGAGGTCAAGGTGACTAAGAAGTTGAATGGGCAGGAGAAACAGATTCGCAAGATGGGCAAAGGGGAGCATTTCGGGGAATTGGCCCTGATACGTGAAATCCTGAGGACTGCAACATGTACAGCTGTTGGCCCTGTGACCTGCTTCTCCATCGATAAGGAGGTGTTTGAGGAGACGATCCCCATTGAACACCTGGAGCTCCATGATGACATCAGCTCTAAGGTTTTGGAGGAGCCAGATGCTCCAGAGAAGACCAGTCCTAGTTCCTATCTGAGACTGAAGGACCTGATCCCCGTACTGTACCAGGAGGGGCGTTACCAGGGAGAACCTGTCACTCTCGGAGTGGGAGGGTTTGGTCGCGTTGAACTGGTGACCACTCTGCATCATGGAAAGTACTTTGCCATGAAGCGGGTCAGTAAGAAACACATTGTTGCCAAGCGACAGGAGGAGCACGTCCTGTTTGAGAAGAGGATCCTCAAAGCCATCAAGAGTGACTTCATTGTCAGGCTCCATTCTGCCTTCAAAGACACTCGCTACATCTACATGATTATGGAGTTCTGTGTAGGAGGGGAGATCTGGACCAAGCTGAAAGAAGTTGGGCGATTTGATGAGCCCATTGCCGTATTCTGCGCTGCCTGTGTAGTGGAGGCCTACGCCTACCTCCATAAAAAGGGCATCATGTACAGAGACCTCAAGCCTGAGAATCTGATGCTGGATGCCAAGGGCTACGTTAAACTGGTGGACTTTGGCTTTGCTAAGGAGTTAGTGCACGGTAATAAGACCTACTCATTCTGTGGTACTCCAGAATACATGGCCCCAGAAATCATCCAGAACCAGGGACATGACTTTGCTGCTGACTTCTGGTCCCTGGGCATCCTAGTCTATGAGCTGCTGGTGGGGAGCCCTCCATTCTCCAGTTCCGAGCCCGCGAAGATCTACCCTAAAATTTTGGACGGGGTGCTCAAGTTCCCACCTTACATGGGCGAGGGGGCCAAGTCCCTCATCAGTAAACTGTGCAGGCCTCGACCGGGTCAGAGGCTGGGAAACACCAAGAATGGGATTAAAGATGTACGCCACCACAGGTGGTTCAGCAGTATGAACTGGCACAAGCTGCGTGTGGGCCAGGTGGAGGCTCCTACAATCAGACTCATACGCAAGGGTCCGTGCTACATCAACTTTGATCGCTTCCCCTTCGACCAGGCTCTGGCTGATGAGGAGTTCTCCGGCTGGGACAAAAACCTCTGACTTGAACCAGAACCTGAAGCAGTCCAAGTGAGTCAGAGTTCAGAGGTCACGGGTTCACTGATAGATCTATCCAGATCAGACTACTTCTTGGTGACATTGGTTTACCCCTTACCTTTAAGACTCTGAACGCAATGTAGCGGTAGGGACTCGTGTGCTCATTGaaagctgtatgtgtgtgttgtgcccAAAAGAAAGATGAATTTAATTTTTAAAAAGTTTGAATGTAATGTCTCATGCTGGACAAAGATATGGTTTTACCGTTGACCCTCATTGTACTTTGTAATTTAGGATGGCATTATTGTTAGTATCTGTTGCTTGTAACATATACTGACTGTATATAATATTCAATGTATGTGTTTCAcattaaaataaatgtatacGTCACCAATGTCCCTTAAATGTATACATAGAGGAGAAAAGGTGCTTCAGTACATGTCATCACTGCTGGGTGGAGACTGAACAGGAATGCAGAGTCTGTTCTAAATGGAATCCTATACTGTGGTTTGGTACAGAGCACAGGTTTGGTATGACGTCAAGTACTATGTAGTATTTGAACATCATTACACACTTCCTCAGTGTCTGTTAGCTTGACTTAAGCTGTTTTACTTTACTGTGGTGAATCAATCAAGTCATCAGACCTCTAAGGACAAACAACTCTTATCAGGAGGGAATAAAACAACAAATCAATATGCCTAATCTGTGATGGTGGTCTGAAGTACATCTGATTTATGTTGGATTAAAAACGAACTGGATGATTGATCAACATGTTTGGTACAAGGGGAGTACAAATTGCCATTGACAATACTACTATTATGATTAATAATATTTTGTATATGCTGCCAAGGACAGCTTCCAGTGTTTGTTACTGCTGTTTTTCATTTGTGTATATCTTCCAGGCCATctttgtatactgaacaaaatataaatgaaacagtgttggtttcatgtttcatgaactgaaataaaaaatcccagacatttt
>XM_036985440.1
AGCTactgagcagacagacagataaggagagacagggggagtggaagaaagggagagagagagaagtaagagCAAGAGGCATGGGGGGAGCCAGGTgagatcagagagaggagagtgagggagaggaaagaTAAAGGATTAGGTGATAGTAGTCAGCGTGTTAGTGCCTGTACAGGTGAGTGGACTCTGAATAGGATTTCCCTTCAAGCTACAGGTGGAGAAAGCCTGATACAGGACCAACTGGATTTACAGAGTGCTGGAGGAAGGTCTTGAACCTCATGTGAAGATCCATGTGGTCACCCTAGCAGCTACACAGACTCACCCTCcgtcctacccctcctctcttcacAGACTACAGGGTGAAGTAAAGCCATGGAGTGCCAGGTGGAGGAGCTGAGGCAGCAGCTGGAGAAACAGACCCTAGTCAACCAGGAGCTGCAGAACCACAACAAGGACCTGGAAAGAAGACTGCAGGAGACGGAGAAGTTGCTGCAGGAGCTTCAGAGTCATTACCATGACCTGGACTTCCCTGATCAGAGGATCAGTAATGAAGGGGGACTTGTGGTCAGGAAGAGCAGAGTGGCTGTCATGGCCCCTGAGCCAATCCCAGAGGATCAGCAGGAGATCATAAAGACTAAAGTCAAGAAGACCGTCAGTGAGACGAGTCTGATCATCAAGGCCATCCAGAAGAATGACTTCCTGAGTCGCCTTGACGATGAGCAGATCACCATGATGGTGGAGCTCCTGGTGGCGATCGACTTCAAACCAGGAAATGATGTAATCAAGGAGGGCACTGAGGGAGACAGCATGTACATCGTAGCAGCGGGTGAGCTCCTTGTCAGTCAAGCAGATTGTAACCTTCGAACCCTgacctgtggggatgtttttggaGAGTTGGCTATTCTGTATAACTGCAAACGCACAGCCACAGTCAAAGCCAAGACAGTGGTGCGTCTGTGGTTTATGGAGAGACAGATGTATAGAACCATCATGACCAACAAGTCCAAGAAGAAACGTGAACAGCTAATGGGCTTCCTAAAAACGTCTCGGACTCTGAAGGCCCTAAATGACAGTCAGCTCTCTAAGATAATTGACTCCATGGAGGAGGTGAAGTACCAGAACAATGATGTCATTGTGCGTGAGGGGGCGGAGGGCAACACGTTCTACATCATTCTCAAAGGAGAGGTCAAGGTGACTAAGAAGTTGAATGGGCAGGAGAAACAGATTCGCAAGATGGGCAAAGGGGAGCATTTCGGGGAATTGGCCCTGATACGTGAAATCCTGAGGACTGCAACATGTACAGCTGTTGGCCCTGTGACCTGCTTCTCCATCGATAAGGAGGTGTTTGAGGAGACGATCCCCATTGAACACCTGGAGCTCCATGATGACATCAGCTCTAAGGTTTTGGAGGAGCCAGATGCTCCAGAGAAGACCAGTCCTAGTTCCTATCTGAGACTGAAGGACCTGATCCCCGTACTGTACCAGGAGGGGCGTTACCAGGGAGAACCTGTCACTCTCGGAGTGGGAGGGTTTGGTCGCGTTGAACTGGTGACCACTCTGCATCATGGAAAGTACTTTGCCATGAAGCGGGTCAGTAAGAAACACATTGTTGCCAAGCGACAGGAGGAGCACGTCCTGTTTGAGAAGAGGATCCTCAAAGCCATCAAGAGTGACTTCATTGTCAGGCTCCATTCTGCCTTCAAAGACACTCGCTACATCTACATGATTATGGAGTTCTGTGTAGGAGGGGAGATCTGGACCAAGCTGAAAGAAGTTGGGCGATTTGATGAGCCCATTGCCGTATTCTGCGCTGCCTGTGTAGTGGAGGCCTACGCCTACCTCCATAAAAAGGGCATCATGTACAGAGACCTCAAGCCTGAGAATCTGATGCTGGATGCCAAGGGCTACGTTAAACTGGTGGACTTTGGCTTTGCTAAGGAGTTAGTGCACGGTAATAAGACCTACTCATTCTGTGGTACTCCAGAATACATGGCCCCAGAAATCATCCAGAACCAGGGACATGACTTTGCTGCTGACTTCTGGTCCCTGGGCATCCTAGTCTATGAGCTGCTGGTGGGGAGCCCTCCATTCTCCAGTTCCGAGCCCGCGAAGATCTACCCTAAAATTTTGGACGGGGTGCTCAAGTTCCCACCTTACATGGGCGAGGGGGCCAAGTCCCTCATCAGTAAACTGTGCAGGCCTCGACCGGGTCAGAGGCTGGGAAACACCAAGAATGGGATTAAAGATGTACGCCACCACAGGTGGTTCAGCAGTATGAACTGGCACAAGCTGCGTGTGGGCCAGGTGGAGGCTCCTACAATCAGACTCATACGCAAGGGTCCGTGCTACATCAACTTTGATCGCTTCCCCTTCGACCAGGCTCTGGCTGATGAGGAGTTCTCCGGCTGGGACAAAAACCTCTGACTTGAACCAGAACCTGAAGCAGTCCAAGTGAGTCAGAGTTCAGAGGTCACGGGTTCACTGATAGATCTATCCAGATCAGACTACTTCTTGGTGACATTGGTTTACCCCTTACCTTTAAGACTCTGAACGCAATGTAGCGGTAGGGACTCGTGTGCTCATTGaaagctgtatgtgtgtgttgtgcccAAAAGAAAGATGAATTTAATTTTTAAAAAGTTTGAATGTAATGTCTCATGCTGGACAAAGATATGGTTTTACCGTTGACCCTCATTGTACTTTGTAATTTAGGATGGCATTATTGTTAGTATCTGTTGCTTGTAACATATACTGACTGTATATAATATTCAATGTATGTGTTTCAcattaaaataaatgtatacGTCACCAATGTCCCTTAAATGTATACATAGAGGAGAAAAGGTGCTTCAGTACATGTCATCACTGCTGGGTGGAGACTGAACAGGAATGCAGAGTCTGTTCTAAATGGAATCCTATACTGTGGTTTGGTACAGAGCACAGGTTTGGTATGACGTCAAGTACTATGTAGTATTTGAACATCATTACACACTTCCTCAGTGTCTGTTAGCTTGACTTAAGCTGTTTTACTTTACTGTGGTGAATCAATCAAGTCATCAGACCTCTAAGGACAAACAACTCTTATCAGGAGGGAATAAAACAACAAATCAATATGCCTAATCTGTGATGGTGGTCTGAAGTACATCTGATTTATGTTGGATTAAAAACGAACTGGATGATTGATCAACATGTTTGGTACAAGGGGAGTACAAATTGCCATTGACAATACTACTATTATGATTAATAATATTTTGTATATGCTGCCAAGGACAGCTTCCAGTGTTTGTTACTGCTGTTTTTCATTTGTGTATATCTTCCAGGCCATctttgtatactgaacaaaatataaatgaaacagtgttggtttcatgtttcatgaactgaaataaaaaatcccagacatttt

Function

NR:

description
cGMP-dependent protein kinase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612548.2 False 3394 mRNA 0.47 21 38215845 38260820
XM_036985440.1 True 3406 mRNA 0.47 22 38215845 38260820

Neighbor

gene id symbol gene type direction distance location
LOC110531088 NA coding downstream 283882 37930118 ~ 37931963 (-)
LOC110530911 parp1 coding downstream 294434 37905170 ~ 37921411 (-)
LOC110530910 LOC106571760 coding downstream 335967 37859257 ~ 37879878 (-)
acbd3 LOC106571761 coding downstream 364001 37817872 ~ 37851844 (-)
sod2 sod2 coding downstream 423117 37782174 ~ 37792728 (-)
LOC100136309 LOC100136309 coding upstream 24083 38284903 ~ 38302289 (-)
LOC110529893 LOC106571757 coding upstream 69873 38330693 ~ 38387308 (-)
trnal-uaa-3 NA coding upstream 179378 38440198 ~ 38440280 (-)
LOC110530913 NA coding upstream 526693 38787513 ~ 38801952 (-)
LOC118965515 NA coding upstream 561322 38822129 ~ 38826089 (-)
G704730 NA non-coding downstream 136226 38079402 ~ 38079619 (-)
G704727 NA non-coding downstream 139344 38076265 ~ 38076501 (-)
G704712 NA non-coding downstream 160046 38055577 ~ 38055799 (-)
G704703 NA non-coding downstream 176596 38039023 ~ 38039249 (-)
G704701 NA non-coding downstream 179126 38036357 ~ 38036719 (-)
G704855 NA non-coding upstream 19891 38280711 ~ 38281009 (-)
G704862 NA non-coding upstream 34967 38295787 ~ 38296061 (-)
G704877 NA non-coding upstream 54886 38315706 ~ 38316015 (-)
G705135 NA non-coding upstream 396549 38657369 ~ 38657680 (-)
G705145 NA non-coding upstream 404670 38665490 ~ 38665706 (-)
G704702 NA other downstream 177499 38037725 ~ 38038346 (-)
LOC110530908 otof other downstream 723688 37474229 ~ 37626960 (-)
LOC110529880 LOC106571768 other downstream 854252 37355096 ~ 37361922 (-)
G701618 LOC106571560 other downstream 2297670 35900623 ~ 35918175 (-)
LOC110529865 LOC106571568 other downstream 2510532 35633473 ~ 35705333 (-)
G704874 NA other upstream 52669 38313489 ~ 38313803 (-)
G706683 stxbp5 other upstream 958824 39219644 ~ 39226313 (-)
slc22a16 LOC106571810 other upstream 1696141 39956961 ~ 40017167 (-)
G709272 NA other upstream 4458951 42719771 ~ 42720699 (-)
G709454 NA other upstream 4909940 43170760 ~ 43171082 (-)

Expression


Co-expression Network