LOC100136309 (LOC100136309)


Basic Information

Item Value
gene id LOC100136309
gene name LOC100136309
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 38284903 ~ 38302289 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124558.1
ttcccaagaagagtggaggctgttataacagcaaagggggggccaactccatattaatgaccatgattttggaatgagatgttcgacgagcaggtgtccacatacttttgtctaTATAGTGTAAAAACTAACTGACTTGAGCATTCAAAGAGGAAATCACACCAGGGTGAAAGCTGTCTGCTAAAAGCTTTTCAGGGAAAAGAAGCTGGCATTTTAGAAAAATTTAAGAAAGGATAGGGGAGTTCTTGGAATGACTGcctgtttctttccttcttatactctctccctctgtcattatttttttctcctttcctctatccctcttAGTTAAGGGAATAGAGCAAAAAGCTCTGCCTCTCGATGGAAGGAACGAGGTAGGAATTTTTGGGGGTCGGGTGTGTCTAGCCGGAAGCTGGGCAAGAAAGAGAGATAACACAGTGAACCCCACTCCCAAACCTCTTCAGCGTAACAGCCTGTAATAAGTTGTTTGGCACACATTGAAGAACAgggcaagagacagagagagaagaggaaaaaaGAGGCAAAACAGAgcacctctcccctcccaccccttAGTGAGCCAGTCTAAATCATACTGGTTATAAGTGCTGCTGTTCTGTGAGTGTGATGCTGGTCAGACAGACACAGGCGCAGACCTTCAAACCTTGCGGAGCTCCTCTCAGATCCTAAGCAACCCTGGAGAGCCTAGCCATCTCACCCCAGAAACTCTCGCCGCAGCCACCGCTCACTCCCTACAGTGACATGTACCCTGAGGAGACCCGTGGGGGTGGAGGGGCAGCCTCCATTGACTACCTGGAGGGAGTGGATGACTACACTGCCCATGCCCCTGGCCTCGTCCCCTTCTACAGTTCCTCAACCGCGTCCCTGGATGCCCATGGACCCCCCTCGGACGGCCGCCTGCAGTCCCTTCTGTTTGTGCCCTCCACTCCCCAGCTCAGCCCCTTCCTCCGCCACACCAGCCTCCCCAGCCAGTCTATCTACCTGGAGATCTCCTCCAAACCCGTAAACAGGTCAAGTGTGGTAGCCAATCAGCAGTCAGTGTCCCAGGAGGAGCTCAGCAGCGCCTCCGACACTGCGGTGGAGTCAGGGTCAGGCTCAGGTTCAGGGCCAGGGGTTGGTGTGTTAGAGATGGCCAAGGAGACTAGGTACTGTGTGGTCTGCAGTGACTATGCCTCTGGGTATCACTACGGAGTTTGGTCCTGCGAGGGCTGTAAAGCCTTCTTCAAAAGGAGCATCCAAGGTCACAATGACTACATGTGCCCTGCGACCAACCAGTGTACCATCGACAGGAACCGTAGGAAGAGCTGCCAGGCATGCCGCCTCAGAAAGTGTTACGAAGTGGGCATGATGAAAGGAGGCTTGCGAAAGGACCACGGTGGGCGGGTTTTCCGGAGGGATAAGCGGCATGGTGGCACTGCTGGTGACAACAGTGTCCTGGAGCACAGCAAAGCGTCCCCTCAGGATAGTAGCAAGAACAGCAGCttcggtggtggaggaggaggagaagggcgTCTCAAGATCACCATGCCTCCTGAACAGgTGCTGTTCCTGCTGCAGGGTGCGGAGCCTCCAGCCCTGTGTTCTAGTCTGCAGTTGGGCCGTCCCTACACAGAGATCACCATGATGACCCTGCTCACCAGCATGGCTGACAAGGAGCTGGTACACATGATCGCCTGGGCTAAGAAAATACCAGGTTTCCAGGAGCTGTCTCTCCATGGCCAGGTGCAGTTGCTTGAGAGTTCCTGGCTGGAGGTGCTGATGATCGGACTCATTTGGAGGTCCATCCCCAGCCCTGGGAAACTAATCTTCGCCAAGGACCTCATACTTGACagGAGTGAAGGGGACTGTGTGGAGggcatggcggagatctttgacATGCTCCTGGCCACTGTGTCTCGCTTCCGCATGCTCAAACTAAAGCCTGAGGAGTTTGTGTGTCTCAAAGCCATCATCTTGCTTAACTCTGGTGCCTTCTCCTTCTGTTGTTACTCTGTGGAGTCCCTCCACAACAGCCCGGAGGTGCAAAGCATGTTGGATAACATCACTGATGCCCTCATCCACCACATCAGCCAATCAGGAGCCTCGGTGCAGCAGCAGTCCAGACGGCAGGCCcagctcctgctcctgctctcaCACATCAGACATATGAGcAACAAAGGCATGCAGCACCTGTACAGCATGAAGTGTAAGAACAAAGTGCCTCTGTACGACCTGCTCCTGGAGATGCTGGACGCTCACAGGATCCACTCCCCAGGCAAGGTGGCCCAAGCCTGGGGACAGGCCAAGGGGGAGCCCCTCTCTACCAAAGGCTCCAGCATAGGACCCAAGCAAGGCAACCAAGATACCCAGCTCAGAAGCCCCGGTCCTGGGGTACTCGAGTATGGCACTCCACGCTCTGACCGGAGCCCCATTCCATGATGAGATATAGAAATAGGTATTTGTAGATATGGAAGATGTAAAAGTCCTTCCATGCGATATAGTATATGTAGAGAAATATTTTGACATTTGTGGAGGTGAGagtaga

Function

NR:

description
estrogen receptor alpha 2 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005496 steroid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0030284 estrogen receptor activity molecular_function

KEGG:

id description
K08550 ESR1, NR3A1; estrogen receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124558.1 True 2545 mRNA 0.53 9 38284903 38302289

Neighbor

gene id symbol gene type direction distance location
LOC110529892 LOC106571758 coding downstream 24083 38215845 ~ 38260820 (-)
LOC110531088 NA coding downstream 352940 37930118 ~ 37931963 (-)
LOC110530911 parp1 coding downstream 363492 37905170 ~ 37921411 (-)
LOC110530910 LOC106571760 coding downstream 405025 37859257 ~ 37879878 (-)
acbd3 LOC106571761 coding downstream 433059 37817872 ~ 37851844 (-)
LOC110529893 LOC106571757 coding upstream 28404 38330693 ~ 38387308 (-)
trnal-uaa-3 NA coding upstream 137909 38440198 ~ 38440280 (-)
LOC110530913 NA coding upstream 485224 38787513 ~ 38801952 (-)
LOC118965515 NA coding upstream 519853 38822129 ~ 38826089 (-)
LOC110531091 NA coding upstream 748460 39050749 ~ 39053399 (-)
G704855 NA non-coding downstream 3894 38280711 ~ 38281009 (-)
G704800 NA non-coding downstream 5368 38192006 ~ 38279535 (-)
G704806 NA non-coding downstream 54410 38226612 ~ 38230493 (-)
G704730 NA non-coding downstream 205284 38079402 ~ 38079619 (-)
G704727 NA non-coding downstream 208402 38076265 ~ 38076501 (-)
G704877 NA non-coding upstream 13417 38315706 ~ 38316015 (-)
G705135 NA non-coding upstream 355080 38657369 ~ 38657680 (-)
G705145 NA non-coding upstream 363201 38665490 ~ 38665706 (-)
G705254 NA non-coding upstream 439053 38741342 ~ 38741544 (-)
G705261 NA non-coding upstream 443587 38745876 ~ 38746078 (-)
G704702 NA other downstream 246557 38037725 ~ 38038346 (-)
LOC110530908 otof other downstream 792746 37474229 ~ 37626960 (-)
LOC110529880 LOC106571768 other downstream 923310 37355096 ~ 37361922 (-)
G701618 LOC106571560 other downstream 2366728 35900623 ~ 35918175 (-)
LOC110529865 LOC106571568 other downstream 2579590 35633473 ~ 35705333 (-)
G704874 NA other upstream 11200 38313489 ~ 38313803 (-)
G706683 stxbp5 other upstream 917355 39219644 ~ 39226313 (-)
slc22a16 LOC106571810 other upstream 1654672 39956961 ~ 40017167 (-)
G709272 NA other upstream 4417482 42719771 ~ 42720699 (-)
G709454 NA other upstream 4868471 43170760 ~ 43171082 (-)

Expression


Co-expression Network