LOC110529893 (LOC106571757)


Basic Information

Item Value
gene id LOC110529893
gene name LOC106571757
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 38330693 ~ 38387308 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612549.2
ACTGGCCTTGGCCATGTTGTAGGGAGGGGAGGAGCGGGGTCCTAAAAGAGTTCGCTGCCTCTCACGTTTCATCACTTGAGCGCTCGACTACCCCGTCTCGGTCCTATGACCCATTTTAGGCGCGTGCATGCATACTTGCTGACTACTGACTACCTTTTTTTATTGCTTTTATCGCATTTGCCGTGGTTTCCGGACGAGCAGGAGCCAAAGAGGTGAAATAAGTGCTGTTTTCGCTATGGGAGCACAGACCTCAGCGCATCGGGACGGGAAGAGCCAAGAAGATGCTTCAGCCGAGAATCTGAGATCAGCGGTGAACGCGATTTCGGAGGGAGATAGCGTCGTcgaatccaagCTCCAGCAGAAGAATGGACAGATCTCCATCACCAGTCTGAAGGGGAaggcagatgaacagacagaGCTCAATGACCACTCAGAGGACAACACCCTGGCAGAGGAAGTTGATGGCGTGTCCGTGTCTCAGAAGGAGGAGGTTCTTGAGACGATGGGCTCCCTCCAGGCTGTGGTGGCCTCTCAggtgaacagagaggaggaggagaatgagtctcCTGATGCCAACAACATCACCAGGCCTGAAGAGAAGGTTGTTGAGGAGAAACCAGGCGAGGCCAATGAGGTGGGCTTCAAGAAGATCTTCAATTTCATCGGCTTCAAGTTCACTCTGAAGAAGGACAAGAATGAGAAGACTGACCCGGTGCAGATGCTGAAGTTGATGGACAAGGAAGTGGAAGGAGGGACTAAGGGGTCTGAGGAAACTAAGGAGGAAGCCGCCACGGCAGAGGAGGGGAAGGCAGCTGAGCCAGAGACCGCCACTGTTGAGGCTGACTTCTCTGAAACCACAACTGAAGCTGCAACTCCAGTGGATTCCCCATCTCAGACTGTGGATGGAGAGGCTGCAGAAAAAGAGCCCTCGGACCCAGCTGCAGCTGCAACTACCCTACGTGGCCAGGAGGCCCCCCTGTCCCCCTTCAGAAGGTTCTTTACACAGGGAATCTTCTCCAATCAGCGCAAGAAGGCAAGTATCAAAAGAGccaaagagaaggaaccaaaagaGAAAGCTGCTGAGGATAAgataaaggagggagaggaggaagcagaGCAAGAGGTGAAGGAGGTGGAGCCAGTGACAACACCAGAAACTGAGACACCTGAAGTATCTGCGGAAGAGATCAAAGAGGAGATCCAAGCCGAATTTGCCATGGAAACCTCAGAAGCTGCTGTTACTGATGACGCCAAACAAGCGGAGGAGAATGTTGAAGAAGCTGTGGAATCAGACAAGGCCCTAGTTGAGGTCACCACCAAGACTGAGCTTTTCTCATCCCAGAAGAAGGTCAAGGCCCAGGGTAGCCCACTGAAAAACCTGTTTACTGGCGCTGGCCTGAAGAAGCTCTCTACCAAGAAACAGAAGAAAGACAAGAAAGATACAGAGACCAAGCTGACCGAGTCTGGGGAACAGGCGGCTGAACAGCTCCAGTCCTCTACAGAGTCGGCAGAGGTCCAGAAACCTGACAGTGGGGCATCATCTCCAGAGGAGTCTGGTGAGCATGCCATCGGGGTGGAAGCCACCCAAGCTGAGCCCAGCCAAGAGGCTGATGAGGAGGTAACAAGCTTAGACGAAGGGAAGAAGAAAGAAGGTATCATGCCCTGGTCCTCCTTCAAGAAGCTGGTGACACCCAAGAAACGAGTCAAGAGGCCCTCTGAGAGCGAGGACGAGGCAACTGTTGAGAAGGCCATGTTGGCCACCCTGTTCTCCACTGACAGTGCCGTGTTTGTGGAGAAAAATAAAGAGGAGCCGGAACTCCCTGAAGAGGAGCCAAAAGCCAAAACCACAGAGGACCTGGATGGCACCACAGAGGACCCCAAAAAGATGAAGATGGACACCTCACTCTCCTGGGAGGCCCTGATGTGTATGGGGGGAAACAAGAAGAGGACCAGGAAGACCTCTGACTCTGAAGATGAGGAGACCAAAATCGAAGAGGAGACACCACCAACTGGGGAAGAGCAGGTTAAGACAGCAGTCTCTCCTTTTGGCAGCTCTGGAGAGGCAGATCAGGAAAACACAGTGTCATCCCCCGAACCATCCACTAGCCCCGCCGCAGGAGACTCCACATGGGATACTCTCAAGCGTCTTGTCACCCATAGAAAGAAGCCCAAAAACGAGGAGAGGACAGATGAATCTGGTGGTGAACAGGTAATCTCAGACAGTGAAATTCCCAAAGAAGATTCCTCCTTCTCTCTGAGGAAACTCATTCCCGGACGCAGAAAGAAGAAGCTGCTTTCCTCCGATCTGGGGTCTGGCGAGGAAGATTCCGACACACCAGCCGTGGTCCCTCTCTCAGAGTACGACAACGAGCACGCCGAGAGTAAAGAAGAGGCTGAAGCCGAAATGACAGTGGAGACGAAGGACTCTGAGGAAGCAGCACCAATCACTCAGGTCCAATTGTCAATTGAAGAGAGATCCCCCTCTTGGATCTCAGCCACGGCTGTCATGGAAAACCTCCAGGAGATCCCACATGATCAGCTGAGTGACATCCCAGAAGAGGGTGCCGCCACCCCCAAATCTGCTGACACCACCATCGCAGAGGACATTGCAGAACAGACCTTAGAGGCAGTCCCATGCCAAGAGCAGGAACCTGAGTTGTCTGTTGCCGAGGTGACTGCAAATTCTGATGCCAAGAACATTTTAGAGCAGATCCCAGAAACAGTCACTTGCCAGGAGCCTGAGCTGTCTGTTTCCAAGGTAACTGAAGAGATGATCCCAGTCACGTATAGCGAAACCACCCCTCTGCCCAATGAGCCTGAGACAGAGTCTTTGGAGGTCCCGCAGGAGGCTGTGGAGCTGCTCAATGATCTTCCAAGCCTGACTTCTATGGAAATCATAGAGATCCAACTGGAGGAGGCTGCTTCCATCCCAGAACCCACACCGCCAATCAAGTTCACCGAAACCAAATCAAAGGTTGTCTTGATGGTGCATGAAGAAATCGAGGGTTCTGCCATCTGCACTGACCTGGGTACCAAGGAGATCACCAAGGTGGCTGTGGAGAAGCTTGTAATTCCCACCATGGAATGTCTACCTGAGATCAGCAATGGTCTGTCCGCTGAGATGCCAGTAGAAGATAAGGCTGAACCAACTGAGGCGGCTGACGCTAATGAAGACCCAGTATTCAAGGCTCAAGTGGAGCAGGTCGAAAGCATATTCCTGGAGCCGCCACTAGAGAAAACTATTGAAGACATCCCAGATCCTGATATAGCCACTGAGGGTAAAGAGCATGAAGATGAAAAGGTCGCCACGATCAATAATATCAAGATGGAGGTTGAAATTGTTGAGGCCCCTGCGGTGAATGAGAACATTGTGGACCCCATTGTACCAACTGTCGAAGACTCCATTGCCGCTAACATTGTGGATGGCTCTGAGGCACCTGTCATTGAGGTCAAAAGTAAAGAAGAGATGGCCGCTGCCAAAAAGATTGCTGCTGTAGAGGAGGTGAATGAGCCTGCTGCCCAAGAAATGGTCACTTCACTAACTGATGCCAACCAGCCCACAGTCACTGAAGTGTGCGAGGCAGCCATTGTTGCCCCTGCGTTAGAGTTTGCCATTGTAAAGGAGACCACGTACCTCGTCTTCCCACTGTCCGAGTCCTTGGAAACACAGAAGGTGGAGGTCACAGAGGCTGTGGCAGTGGAAAAGCTCTCAGTGACAGTTGCAGAGCCCGCTGGCGATGACCAAATTCAAGTGCAGGTGACTGAGGTTGGCATTACAGAGGCTGAAGAGACAAAGGAGGCAGAGGCCATGGAGGAGACGGGCTTGGTCATTGCTCAGGTGGTTATCCAGAGTGCTGTGGAGAAAGTGTCTGAAGCAGAGTTTGAACCCAAAGCGTCTGCCTCTGCCACTGCTACCATCACAACTGAAGATGCACTACCAGTCCAGGCGGTAGCAACGATAGAGAAAGAGATTGAACTAGTAGCAGAGGAAAAACCTGTCATTGCTGAAACACCTGTAGTCCAAGTTGAGGAACCAGCACCAGAAAACCCAGCAGAGGTGTCTACCACTCCAGAGGCACCAGCCGAGGGTGAAAAACCACCAAAGGAAGTCCACGAGGCTGTCCAGGTCATTGAAACCGTTCCAGTCACAATTGAAATCACAAAGAGTATCATGGAAGAGGTTACCAAGGAGGTGGAGTATGTTCTCAAAGAGAAAGTAGAGGAAATTAAACATGAAGTGGAATTAAAGCAAGCAATGGAGGTCAATGTAAGTGTGGAGAAAGTTGTAGAGGTTGAAGTTGTAACAGAGGTggaacagacagagagtgagacagatggaaagggagaggaggagatcaaAGAGGTAGAGGGCAACATTGAGGCATTAGAGGTTCAGGAAGTTGTTAAGGAATTACAACTTGAGGTTCAACAAGCTGAGGTAATAACGGTGGTTCAGGAAGTGATAGCAGAGGTTCCCACTCCAGAGACAGCTGAAGAGAAGTCAGAAGCAACGATTGTGACAGAAGAGACCCCAGTCCCAGATGCCCCCACAGAGACTGCTGAAGCCCCAGCCCAGCCAGAGGGGACAACTGCAGAGGTCGTAGTCCCACAGACCACACAGGTGGTCATACAGGCAACAGAGATCAttgaagaggcagaggaggaaaTCATGGTGGAGGTGGTAGAAAAATATGCCATTGTAAGCTCACCAGAGACAAAGGAAGCTCCGGCCAAAGAAGACACAACAGACCCTGAACAAACGCCAGACACCCCCACCCCTGAACCCACACCAGATACCCCCGCTCCAACTGTTGCCGATGTTGTCGAAACAAACATGAAAGACGACAGTGCCGCAGTTCAGGGACACGTATCGGATGGCCCCCAGACAGCACTGGAAGAGCAACAAATATGTGTTTCAATAGAGGCTGGGGCTGCCATCCGAGATGCCCCCGTTaacagcatggaagaggaggttgCTGTTGCCATGGCTGTGACAGTTGCCAGCCCAGCGGAGGCAGCGGCAGAGAAGGCGACGTCGGTGAAGTGTGCGGAGGTGATGGTGCAGGTGATTAAGGAGGTGGTGAAGGAGATCAAACCTGTCTCCTAAGAGCTTACAGCAGCATTGTGAGCAGCTGTAGATGCAAGATGGTTGACTGGAAGACAATGTCCTGACCAGGAAGGGAGTGATAGTGAAAAAGGGAGCGAGAGAATGCTCTATGGAGAAACACACTGAGACTCAGCTCCAACCCACCCTGCCCAGAGTGACTGAGCGACAACTtcacccctctccttcccccctgcCCCCTTCACCCCCTGCCCTGCAGAACCAGCCCCTTCACACAGAGGTGACCCCTCCCCACCCCTGGGGTGAAGCATCAATCTCCCTAAACACACACCAAGCCACTGTCCTAGTCCCACACATCTGAAGCTTCCCACCTGGCTGATAATCAATGTGATGTACGCTTCCTGTCTTGATGAGCTTCCATCGCCCTTGCTGCAACTCGGGAGTATTCTGTCCCCTGgagagtgtggtgtgtgtttgtgtctgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtaaagtgagtttgagaaagtgtgtgtgtgtgtgtaaagtgagTTTgagaaagtatgtgtgtgtgtggtcttagaGTTGGAGGATTATTATCTTGTTTATTGTATTTATATTTTGTGAGTATTTTCTCATTCTCCCCATCCTTTATCTTTTCTATTTCTGATTGTATAGAATATGTGCCCTATtttcacatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacat

Function

NR:

description
A-kinase anchor protein 12-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612549.2 True 5841 mRNA 0.51 4 38330693 38387308

Neighbor

gene id symbol gene type direction distance location
LOC100136309 LOC100136309 coding downstream 28404 38284903 ~ 38302289 (-)
LOC110529892 LOC106571758 coding downstream 69873 38215845 ~ 38260820 (-)
LOC110531088 NA coding downstream 398730 37930118 ~ 37931963 (-)
LOC110530911 parp1 coding downstream 409282 37905170 ~ 37921411 (-)
LOC110530910 LOC106571760 coding downstream 450815 37859257 ~ 37879878 (-)
trnal-uaa-3 NA coding upstream 52890 38440198 ~ 38440280 (-)
LOC110530913 NA coding upstream 400205 38787513 ~ 38801952 (-)
LOC118965515 NA coding upstream 434834 38822129 ~ 38826089 (-)
LOC110531091 NA coding upstream 663441 39050749 ~ 39053399 (-)
slc22a16 LOC106571810 coding upstream 1572061 39956961 ~ 40017167 (-)
G704877 NA non-coding downstream 14678 38315706 ~ 38316015 (-)
G704862 NA non-coding downstream 34632 38295787 ~ 38296061 (-)
G704855 NA non-coding downstream 49684 38280711 ~ 38281009 (-)
G704800 NA non-coding downstream 51158 38192006 ~ 38279535 (-)
G704806 NA non-coding downstream 100200 38226612 ~ 38230493 (-)
G705135 NA non-coding upstream 270061 38657369 ~ 38657680 (-)
G705145 NA non-coding upstream 278182 38665490 ~ 38665706 (-)
G705254 NA non-coding upstream 354034 38741342 ~ 38741544 (-)
G705261 NA non-coding upstream 358568 38745876 ~ 38746078 (-)
G705266 NA non-coding upstream 361706 38749014 ~ 38749394 (-)
G704874 NA other downstream 16890 38313489 ~ 38313803 (-)
G704702 NA other downstream 292347 38037725 ~ 38038346 (-)
LOC110530908 otof other downstream 838536 37474229 ~ 37626960 (-)
LOC110529880 LOC106571768 other downstream 969100 37355096 ~ 37361922 (-)
G701618 LOC106571560 other downstream 2412518 35900623 ~ 35918175 (-)
G706683 stxbp5 other upstream 832336 39219644 ~ 39226313 (-)
G709272 NA other upstream 4332463 42719771 ~ 42720699 (-)
G709454 NA other upstream 4783452 43170760 ~ 43171082 (-)
G711133 NA other upstream 6151485 44538793 ~ 44539504 (-)

Expression


Co-expression Network