LOC110530913


Basic Information

Item Value
gene id LOC110530913
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 38787513 ~ 38801952 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110530913
atgttccagtcaGCCTCAGAGGACGACTTTGATCTATACACTGACTCGTCCTGGGTGTTTCTGGGTAGCTGCCCTCGCCAGCTGGATCAAGTGACCCTCAAGCTGAAGGAGGAGCTGGGCGTGACTATGTTGGTGAACTTCCAGAAGGAGGGGGACGTGGTCAACATCTTTTCCGGCTACTACCGCGACCCCGGGCAGGATATGACCCCAGAGACCATGATACACCTGTACAGGGACTGTCGCCTGAGATTGTGGCTTTGCCTATCATGTGGATCCCCATGCTGGATGGGGGGCTCTGGGAAAGGATGAGGATCCTACCCCAGAATGTTTTCCTGCTGCACGGTCTCCTGGAGAACGGTCACACGGTCTACGTTCACTGTAAGGCTGATGTTGGCCGCTCCACCACAGTCGTGTGTCTCCTTATGTTTGTCCTGGGATGGAGCAAGAGGAAGGAGCATTATTTTGTCACTCCCTGGAGGGCGGCGGTCTAAATCAACAAGGAGACACTGGTAAACGCCATGGGGGACTTCATGCGCACCTCTGTTTGCTACTTGGAGACATGA

Function

NR:

description
PREDICTED: laforin isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110530913 True 563 mRNA 0.55 3 38787513 38801952
Loading

Neighbor

gene id symbol gene type direction distance location
trnal-uaa-3 NA coding downstream 347233 38440198 ~ 38440280 (-)
LOC110529893 LOC106571757 coding downstream 400205 38330693 ~ 38387308 (-)
LOC100136309 LOC100136309 coding downstream 485224 38284903 ~ 38302289 (-)
LOC110529892 LOC106571758 coding downstream 526693 38215845 ~ 38260820 (-)
LOC110531088 NA coding downstream 855550 37930118 ~ 37931963 (-)
LOC118965515 NA coding upstream 20190 38822129 ~ 38826089 (-)
LOC110531091 NA coding upstream 248797 39050749 ~ 39053399 (-)
slc22a16 LOC106571810 coding upstream 1157417 39956961 ~ 40017167 (-)
LOC110530919 cdc40 coding upstream 1330239 40132191 ~ 40164976 (-)
LOC118965516 LOC106588149 coding upstream 1341959 40143911 ~ 40145193 (-)
G705292 NA non-coding downstream 20124 38764581 ~ 38767389 (-)
G705271 NA non-coding downstream 33373 38753922 ~ 38754140 (-)
G705266 NA non-coding downstream 38119 38749014 ~ 38749394 (-)
G705261 NA non-coding downstream 41435 38745876 ~ 38746078 (-)
G705254 NA non-coding downstream 45969 38741342 ~ 38741544 (-)
G706700 NA non-coding upstream 438911 39240863 ~ 39241112 (-)
G706703 NA non-coding upstream 443114 39245066 ~ 39245432 (-)
G706797 NA non-coding upstream 587330 39389282 ~ 39389528 (-)
G706800 NA non-coding upstream 594858 39396810 ~ 39397157 (-)
G704874 NA other downstream 473710 38313489 ~ 38313803 (-)
G704702 NA other downstream 749167 38037725 ~ 38038346 (-)
LOC110530908 otof other downstream 1295356 37474229 ~ 37626960 (-)
LOC110529880 LOC106571768 other downstream 1425920 37355096 ~ 37361922 (-)
G701618 LOC106571560 other downstream 2869338 35900623 ~ 35918175 (-)
G706683 stxbp5 other upstream 417692 39219644 ~ 39226313 (-)
G709272 NA other upstream 3917819 42719771 ~ 42720699 (-)
G709454 NA other upstream 4368808 43170760 ~ 43171082 (-)
G711133 NA other upstream 5736841 44538793 ~ 44539504 (-)

Expression

LOC110530913 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.4.
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LOC110530913 Expression in each Bioproject

Bar chart with 3 bars.
LOC110530913 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
End of interactive chart.

Co-expression Network