LOC118965515


Basic Information

Item Value
gene id LOC118965515
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 38822129 ~ 38826089 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052874.1
ttgaccacacagtcaccaccaccattgacgacacagtcaccaccacaattgacgacacagtcaccaccacaattgacgacacagtcaccaccaccatTGACGACACAGTCACCACCAACATTGACGTCCCAGTCACCGCCACTGAGCTTAGCAAAGGATAAAATTGCTAACGGAATAAATGGTTTCAACGAGGACTGGTGTGGAGATTCAGCACTGCCTTTAGCCCCGTTAGTGAGTGGCGGTTCGGCGAAGTCTCCAGTATGTCTGACCTTCTGAGGAAGTCAACACAGTTGAGCACAAGATGGAGGGCGTTCCACTGCCGTCCATGTGCACAGCCAGAGACATATCCCTCCTCTCAGTCTTGAAACTCTAGGAGCAACACACAACCTTAGTGTAGCTAACAGAGGTTAGGTACTGGTGTCTAATTTGATTCAGGTTTtgatgttacatttattttttttattggaaAAGACTGTCCCATGTTATATTGAGGTTGAAGAGTAAGAGCCTTTAATGTAAAACCTTCTCGACACAGTTCCAGTGGCGGTAAAATTGGACCTGAATTTTGCACTCTTAAACCCATTTTCAATTTACTGAAATCATCCTCCATGAAATGAATCTGAAGGGCAAGTCTGCTCTCTGTGTGGGTTGGACCAGAAAGGGACCACAACACACAAACTAAAACAAAGCGAGAGAAGACACACAAGGTCCTAATGGACATTTCCCAACGATGCATGTGATTCTGTTGCCATTTAATACAAATAGTCTTTAA
>TU802383
caaggtttctacaaatctctgctgttgaaaactaaatgttagtttAAAAGacgtgagataatgtctagatgctttttatagtggagatcaagtttataaattgcctgcctgggctgatgagacagtggattgcgcagtcaggtAGTAACTTGTGGAATTAGACCccagctggaatgcggttttaaccaatcagcattcaggattagacccacccgttgtatataACTATATTTACAACCTCGTCTGAGGATTTACATTCCCAGTCTAGGATTTTAAAGTGCCACTGCCACCATATAGGCCTTTCTTTTCTTATTGTTTGTACAATAGCACTGATGTTGATTCTCTTACCCTATACCCCTTTAAATGTTAACTAGACTGGAGTGAACTTTCCTGCCTTACTAATGCTTTCTTACCTGTTCTGTTCGGGCAGGTGTGGAGATTCAGCACTGCCTTTAGCCCCGTTAGTGAGTGGCGGTTCGGCGAAGTCTCCAGTATGTCTGACCTTCTGAGGAAGTCAACACAGTTGAGCACAAGATGGAGGGCGTTCCACTGCCGTCCATGTGCACAGCCAGAGACATATCCCTCCTCTCAGTCTTGAAACTCTAGGAGCAACACACAACCTTAGTGTAGCTAACAGAGGTTAGGTACTGGTGTCTAATTTGATTCAGGTTTtgatgttacatttattttttttattggaaAAGACTGTCCCATGTTATATTGAGGTTGAAGAGTAAGAGCCTTTAATGTAAAACCTTCTCGACACAGTTCCAGTGGCGGTAAAATTGGACCTGAATTTTGCACTCTTAAACCCATTTTCAATTTACTGAAATCATCCTCCATGAAATGAATCTGAAGGGCAAGTCTGCTCTCTGTGTGGGTTGGACCAGAAAGGGACCACAACACACAAACTAAAACAAAGCGAGAGAAGACACACAAGGTCCTAATGGACATTTCCCAACGATGCATGTGATTCTGTTGCCATTTAATACAAATAGTCTTTAATACCACCTTTCAT
>TU802384
gagttcatgacacgttcattactatgcgaCAGCTAGAGATCGAATTTGAACGttaaaacaatgttgcaaatgtaggagagacagacagcaaggtttctacaaatctctgctgttgaaaactaaatgttagtttAAAAGacgtgagataatgtctagatgctttttatagtggagatcaagtttataaattgcctgcctgggctgatgagacagtggattgcgcagtcaggtAGTAACTTGTGGAATTAGACCccagctggaatgcggttttaaccaatcagcattcaggattagacccacccgttgtatataACTATATTTACAACCTCGTCTGAGGATTTACATTCCCAGTCTAGGATTTTAAAGTGCCACTGCCACCATATAGGCCTTTCTTTTCTTATTGTTTGTACAATAGCACTGATGTTGATTCTCTTACCCTATACCC
>TU802385
GAAGGCGCCGGTGCAGACACACAAGGCAAAGGGAGGTTGGTTGAAAGTCAAGGGAAAAAAAGAGCTGCTGACTCTCCCGGTCCCACCACCACTCCCAGCTCCACCTTACAACACCCTAAATACTCCACTCCCTGCCCTCTTAACGATGGAGCAGCAACATATCCGCTGTGTGACCTGCCTGAGTCAGAGGTGCATGACCAGGCCAGAACCCGGTATCTCCTGTCACCTGCCCCCTAGTCTGTGGGGCCATTTTCCACTCCTTCAAAGGGCCCGAgcacctcctcctctgtcccctggAGAGAATGCCCTGCCTGAACAGGGGTTTTGGCTGCCCTGACACTCTAGTGCAGACCCGGATGCCTGCGCACCATGGAGTGGAACAAGTGGGCTATCAACTGCTTGGATTACACATCATACGAGAGCTTGATCTGGGGGGTGGAGGAGACAGAGCAGCTGGACATGGCGCTGGCCCTGCAGGACCATTACACACTGATCAAGTCCCTCAAGGTGGTCCCAATGGCGCCCACGGTCGAGAGAAAGCCACCTGTTTTCGCCGTAGAGAGCGCGAGTGAGAGCAAGGACACTGCGTTGACAACGCATTCACCACCCTTGATGAAACAGTCATGACTACCATTGACGACACAGTCACCACTACCATTGACGACGCAGTCACCACCACCAATTGacgacacagtcaccaccaccaccaattgACGACAcagttaccaccaccaccattgacGACGCAGTCACCACCACCAATTGacgacacagtcaccaccaccaccaattgacgacacagtcaccaccaccaccaattgacgacacagtcaccaccaccaccaattgACGACAcagttaccaccaccaccattgacgacacagtcaccaccaccaccattgacGACgcagtcaccaccaccaccattgacgacacagtcaccaccaccattgacgacacagtcaccaccaccaccattgacgacacagtcaccaccatcaccattgacgacacagtcaccaccatcaccattgacgacacagtcaccaccaccattgacgacacagtcaccaccaccaccattgacgacacagtcaccaccatcaccattgacgacacagtcaccaccatcaccattgacgacacagtcaccaccaccaccattgacgacacagtcaccaccaccaccattgacgacacagtcaccaccaccaccattaacgacacagtcaccaccaccaccattgacgacacagtcaccaccaccaccattaacgacacagtcaccaccatcaccattaacgacacagtcaccaccatcaccattgacgacacagtcaccaccaccaccattaacgacacagtcaccaccaccaccattgacgacacagtcaccaccaccaccattgacgacacagtcaccaccaccaccattgacgacacagtcaccaccaccaccattgacgacacagtcaccaccaccaccattgacgacacagtcaccaccaccaccattaacgacacagtcaccaccaccattgaccacacagtcaccaccaccattgacgacacagtcaccaccacaattgacgacacagtcaccaccacaattgacgacacagtcaccaccaccatTGACGACACAGTCACCACCAACATTGACGTCCCAGTCACCGCCACTGAGCTTAGCAAAGGATAAAATTGCTAACGGAATAAATGGTTTCAACGAGGACTGGTATAGCAAGCTGTGCTagtatttcatccttccacaagacatAGTCCGAC

Function

NR:

description
PREDICTED: F-box only protein 30-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052874.1 False 772 mRNA 0.45 2 38822142 38824045
TU802383 False 1018 lncRNA 0.42 1 38822129 38823146
TU802384 False 445 lncRNA 0.40 1 38822790 38823234
TU802385 True 1786 lncRNA 0.54 2 38823799 38826089

Neighbor

gene id symbol gene type direction distance location
LOC110530913 NA coding downstream 20190 38787513 ~ 38801952 (-)
trnal-uaa-3 NA coding downstream 381862 38440198 ~ 38440280 (-)
LOC110529893 LOC106571757 coding downstream 434834 38330693 ~ 38387308 (-)
LOC100136309 LOC100136309 coding downstream 519853 38284903 ~ 38302289 (-)
LOC110529892 LOC106571758 coding downstream 561322 38215845 ~ 38260820 (-)
LOC110531091 NA coding upstream 226704 39050749 ~ 39053399 (-)
slc22a16 LOC106571810 coding upstream 1135324 39956961 ~ 40017167 (-)
LOC110530919 cdc40 coding upstream 1308146 40132191 ~ 40164976 (-)
LOC118965516 LOC106588149 coding upstream 1319866 40143911 ~ 40145193 (-)
armc2 armc2 coding upstream 1814226 40638271 ~ 40669501 (-)
G705292 NA non-coding downstream 54753 38764581 ~ 38767389 (-)
G705271 NA non-coding downstream 68002 38753922 ~ 38754140 (-)
G705266 NA non-coding downstream 72748 38749014 ~ 38749394 (-)
G705261 NA non-coding downstream 76064 38745876 ~ 38746078 (-)
G705254 NA non-coding downstream 80598 38741342 ~ 38741544 (-)
G706700 NA non-coding upstream 416818 39240863 ~ 39241112 (-)
G706703 NA non-coding upstream 421021 39245066 ~ 39245432 (-)
G706797 NA non-coding upstream 565237 39389282 ~ 39389528 (-)
G706800 NA non-coding upstream 572765 39396810 ~ 39397157 (-)
G706816 NA non-coding upstream 604104 39428149 ~ 39428369 (-)
G704874 NA other downstream 508339 38313489 ~ 38313803 (-)
G704702 NA other downstream 783796 38037725 ~ 38038346 (-)
LOC110530908 otof other downstream 1329985 37474229 ~ 37626960 (-)
LOC110529880 LOC106571768 other downstream 1460549 37355096 ~ 37361922 (-)
G701618 LOC106571560 other downstream 2903967 35900623 ~ 35918175 (-)
G706683 stxbp5 other upstream 395599 39219644 ~ 39226313 (-)
G709272 NA other upstream 3895726 42719771 ~ 42720699 (-)
G709454 NA other upstream 4346715 43170760 ~ 43171082 (-)
G711133 NA other upstream 5714748 44538793 ~ 44539504 (-)

Expression


Co-expression Network