LOC110529894 (LOC106571778)


Basic Information

Item Value
gene id LOC110529894
gene name LOC106571778
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 38896847 ~ 38923455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612550.2
GACATTTCCGGGTCCTATGACTCCGTGTCATATGATGTGTTTTTGAACAAGGGGGGGAGGGAAGTAGAACACTTTCTATTGTAGTTAGTTACCATATTTCCAAACAGCACAGAAACAGTTTCCCATTGCCTCATCGTGTGAGAGAAAAACAAGGTGTTGAATTTGAGAAAGTCACTGTCATTCGGACTTTCACACTATGGCGGGCGGATCGGTATCGGAGTGCAAGGAATACTTGTTCAAAGTCCTTGTCATCGGGGAGTTAGGTGTGGGGAAAACCAGCATCATCAAAAGATACGTCCATCAGTTATTTTCCCAACACTACAGAGCGACTATTGGGGTCGATTTTGCGCTCAAAGTTATCAACTGGGACAGCAACACGCTGGTGAGGTTACAACTATGGGATATCGCAGGCCAGGAGCGATTCGGGAACATGACGCGGGTGTACTACAAGGAGGCGGTGGGGGCATTCGTGGTGTTTGACGTGACGAGGGGCTCCACTTTCGAGGCAGTGTCCAAATGGAAGCACGACTTGGACAGCAAGGTGAAACTGGCCAATGGGAGCCCTATACCCTCGGTGCTGCTTGCCAATAAGTGTGACCAGAAGAAAGAGAGCTCCAAAAACACTTCCCTCATGGACAACTTCTGTAAAGAGACTGGCTTCCTGGGCTGGTTCGAGACCTCGGccatgGACAACATCAACGTGGACGAGGCAGCTCGGTTCCTGGTGGAGAACATCCTGCTGAACGACAAGGGCCTGCCATACGAGGAGAGCAACGGGGACCCCATCAAGCTCGACCAGGAGACGGTGGCTGCTGAGAGCAAGCCAGGCTGCTGCTAGCTCTGAGGACTCCTACTGCATCTACCTTTCAACCTCCTCCCactgaatcaatcaatcaattgtatttataaagccctttttacatctgtcgatgtcacaaagtgctatacagaaacccagcctaaaaccccaaacatcaagcaatgcagatgtagaagcgcGTTGGCTAGAAAAAAACGCCCTAGAATGGAatgaacctagaaagaaacctagtgAGGAACcatgctctgaggggtggccagtcctcgtctggctgtgccgggtcGAGATTACAACAGGGTAGCACCTCAGGCCAGCTCACACAGAGGGCCTAGAGGTCAAGGACTGGGTCTCCTAGCCCCACCCCTCCCCTATGTCCATTAACCCTGGACCCCCTCAACACCCTTCCAAACCTTAGCCGCCGTCTTCTGTATCTATGATCACACCGGGTTGCTGTTCAGGAAGGGCGTGACCCTGAACCCCATATCCCACCCCAAGCTGTCGTTACACTGGACCCATGCCCCCTGTCCAATGACCCTGCGGAATGGCTACTGTCCAGGGTGTGGGTCTCGTCACACCCTAGCTCACTGACCATTACGCATGCAACTCTCTTGTTTCATAATGGTGCCATgagttctcttttttttttttttcattgtttttgcTGAAGGCCTGAACAAAGGTGGGACTAAGGATGTACCataaataaatgtgtgtttttatCATGATGATCTGTGGAACATCTTCCAGTGTTCTTCTAGGAAATGCTAGTCACACacggacaacaacaaaaaatacatttatcTTGAAAGAAAGAACAAATAGAAGGAAGGTGCCATTGGAACTCAGAGAGAAATCCCTGAGAGACTTGATGTCTCAGTAATAGTAAGAAAGAGTACATCTAAgatgtgtatttttttttacatttgtgtttGATCATGTACTGTACAATTCCTGGTGAGGTACATCAGGCGGGGGAGGGAACCCTCCCACTACCCAAGCAGTTGAGAATCCTAGGCAAGtgtacattatttttttaaacaccgTGCGGGGTCTATTAAGTTTGTGTGAAAATATACTTTGAAACTACTACAAAAACcaaaaaataataaacatttttaaTTGATAATa

Function

NR:

description
ras-related protein Rab-32-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0060036 notochord cell vacuolation biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07918 RAB32; Ras-related protein Rab-32

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612550.2 True 1948 mRNA 0.47 3 38896847 38923455

Neighbor

gene id symbol gene type direction distance location
grm1a LOC106607995 coding upstream 267 38839996 ~ 38896580 (+)
LOC110530912 LOC106571754 coding upstream 255249 38472193 ~ 38641598 (+)
LOC118965514 NA coding upstream 428999 38463535 ~ 38467848 (+)
LOC110529891 LOC106571759 coding upstream 757762 38093831 ~ 38139085 (+)
LOC110529887 wtap coding upstream 1095812 37793008 ~ 37801035 (+)
adgb adgb coding downstream 6001 38929456 ~ 39047229 (+)
stxbp5a stxbp5 coding downstream 147010 39070465 ~ 39235478 (+)
LOC110529897 NA coding downstream 313610 39152161 ~ 39239854 (+)
LOC110530918 samd5 coding downstream 336243 39259698 ~ 39260509 (+)
LOC110529898 sash1 coding downstream 539870 39463325 ~ 39796219 (+)
G705369 NA non-coding upstream 73994 38822128 ~ 38822853 (+)
G705348 NA non-coding upstream 87860 38808385 ~ 38808987 (+)
G705347 NA non-coding upstream 88694 38807947 ~ 38808153 (+)
G705332 NA non-coding upstream 102669 38793842 ~ 38794178 (+)
G705330 NA non-coding upstream 105256 38791296 ~ 38791591 (+)
G705806 NA non-coding downstream 407065 39330520 ~ 39388526 (+)
G705875 NA non-coding downstream 516493 39439948 ~ 39440159 (+)
G705883 NA non-coding downstream 524304 39447759 ~ 39448177 (+)
G705885 NA non-coding downstream 525947 39449402 ~ 39449601 (+)
G705273 LOC100136012 other upstream 140542 38755871 ~ 38756305 (+)
G704281 NA other upstream 666873 38226055 ~ 38229974 (+)
G703835 LOC106584613 other upstream 1125212 37770864 ~ 37771635 (+)
G702817 LOC106571770 other upstream 1647038 37248737 ~ 37249809 (+)
G702687 NA other upstream 1837624 37058345 ~ 37059223 (+)
G705853 NA other downstream 479493 39402948 ~ 39403296 (+)
G706274 NA other downstream 1174451 40097906 ~ 40102291 (+)
LOC110530920 LOC106571806 other downstream 1242753 40166174 ~ 40323818 (+)
G708034 NA other downstream 2163243 41086698 ~ 41167970 (+)

Expression


Co-expression Network