XLOC_025788


Basic Information

Item Value
gene id XLOC_025788
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 55386215 ~ 55387657 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052805
GTGAGTCGTGTTTGGTAGAGGGAACCACATGGTAAACTTAGGCTACCGACCCACTCCGGTTCTGATTTTTTTGAGAACATTATTGTTGCTACTCAAATGTGAGTATTGAATAAGTTTTAAGTTTGAAaagtattttcattatttagttgtgatttgccCTATGTTTATTTCTTATGTAGACAGGACCTGTTGTCCTAGAGATGTTCAGATGAGGTGTTTGTTGGTGCTTTCAATGGACTGCAATGATTTGGTTTCAACATTCTTTATGCTTCTCATTGGCAAGTGAACTATATGTGTACACTTGGGATGATGGTCAGTGACTCTTAAATTCCTCATCGTACTACCGATTTCCCAGTTTAAGGAAGTGGATAATATTGCATCGCACTCAAATCCATCTACGCAACATTCACCCAACCATCTATattgattacttttgtttgtgtggactatatactgtatacacctGTAGAGAAATTAAACAAGAAGGAAAAAGGGAAGAACAggcttgtgaagtttattttaatttcagtatgtgtgaaataaaaattctgtgaacTCCCTCAGTGTAACATCTTGCATGCATAGAGGTGGTGTTACAATTGTTAGTAGCCTCCAGAACCTCAACACACCAGATCAAATGTGACACGATGAAGGGGTATGTTAAAAATTGTTTAGCAAacgtcaaactttttttttttttttaaattagatcaAGGTCGATATGAGTGTATGTTAATACGTAAACAAATTTATGTAATTCTATTCACAAGCAGAGACAAAACAATAGCAATGTTGTTAGTTTGAGTCAATTTCTAGCTAGCTATGTGTAAGCTAGCAACATATACTACATCTCACTTATGTAGGTAAGTTTTCCTATaaatgtttttgtctgtttttaggCTGCATGAGAGCCTTTTTTGGGAAGATATTTTTCTGACCTGttcttatctttttatttttattaacttcatcgtttaaaataattaaattacatttgcaGCAAAATTACAATGCGTGTAACACTCCATACGAGAATTTAACGGCACACTCACTAAaaagctaaattaattaattatttaattaatttaataataaatgttatgtgcgtttatattaaaacaacaaaacattcattATCAGTAATTGACCACCAACAATCACAAATAAACCTATATATGTTcttactaattttattttattttcacttaatCTTAATCATGTCTGATTAATTATTGAAGTTATTTTTGCTagtattgttaaatattaaattatagacTGTATGTGTTTGCTGGATAATTAGGCCTATATGTTAATTGTGATGTCTACTTCACCTGTGAATCTGTGATTATCCATTCTTTTTATGGTACTGTTTGGGATTGTATcccaaataataatagtagtaatagaaaataataatagaaaataaacaataaaaaagcttAA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0000154 rRNA modification biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0031167 rRNA methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0030684 preribosome cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140102 catalytic activity, acting on a rRNA molecular_function
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052805 True 1443 lncRNA 0.31 1 55386215 55387657

Neighbor

gene id symbol gene type direction distance location
XLOC_025787 CT583658.1 coding upstream 87057 55299043 ~ 55299158 (+)
XLOC_025786 si:dkey-114l24.2 coding upstream 95578 55288200 ~ 55290637 (+)
XLOC_025785 hbbe1.3 coding upstream 254163 55131289 ~ 55132052 (+)
XLOC_025784 hbbe1.2 coding upstream 262776 55122662 ~ 55123439 (+)
XLOC_025783 hbbe1.1 coding upstream 271341 55114097 ~ 55114874 (+)
XLOC_025789 NA coding downstream 94463 55482120 ~ 55488241 (+)
XLOC_025790 NA coding downstream 259216 55646873 ~ 55654264 (+)
XLOC_025791 FP326652.1 coding downstream 711599 56099256 ~ 56107909 (+)
XLOC_025792 prkcab coding downstream 775619 56163276 ~ 56342119 (+)
XLOC_025793 NA coding downstream 971025 56358682 ~ 56360650 (+)
XLOC_025429 BX649540.1 misc upstream 25137179 30248739 ~ 30249036 (+)
XLOC_025776 NA non-coding upstream 549698 54834509 ~ 54836517 (+)
XLOC_025769 NA non-coding upstream 1049576 54332726 ~ 54336639 (+)
XLOC_025768 NA non-coding upstream 1082591 54289678 ~ 54303624 (+)
XLOC_025767 NA non-coding upstream 1102030 54283767 ~ 54284185 (+)
XLOC_025796 CU019632.1 non-coding downstream 1231538 56619195 ~ 56622872 (+)

Expression


Co-expression Network