LOC118965516 (LOC106588149)


Basic Information

Item Value
gene id LOC118965516
gene name LOC106588149
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 40143911 ~ 40145193 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985463.1
tttctttcacagtggcactgactccgactgggagcccccagtgccaaggtgtccatccccctctgaagctggttcatccagctgtacccctgctgtctctggctccacacctcccgggccatctagaggtgtgaagaggaagaggggaagtgtGCCACCCACTAACAGAGGGACAGAAGGGCGTTGGCACACCATCCTAGAAGATGATGTGGAGCCACCACAACCAACTTTCAGGCCGAAAAGGAAGCCAGGACCTCAGGTGAACCGCTCTACCACAGCATCGTCGAGGCCTGCAAGACGTACTTTCAGCCTGCCCAGAACGTGTCAAtcgatgagaggatggtagcctcaaaggcAAGAATTGGCCTCAAACAATACATGAGAAACAAACCAACCAAGTGGGGTTACAAGctgtttgttttggctgattctGTATGTGCCTACACATGCAATTTCTTTGTCTACGAGGGGAAGAACAGTTTTGCTACCGGTAAGGGACTCAGCTATGACTCTGTAATggagttattggattttcaactgctagggaagggctacaaactgtttgtggataacttctacacaagccctaccctgtttGCAGACCTAAGGAAGCTGGATGTAtgggcttgtggcaccattcgtACCAACAGGGTGGGCTTTCCGAAGACTAAGGTGAACGACATGCCTAAGCGGGCTGAGCGGGGGAGCATGCGATGGATCCGTGAAGATGGCCTGCTTTTTGTAAAGTGGATGGATACCAGAGAGGTGGTGATGTGCTCCActatccacaagtccttcagtgggGATCATGTTGTCAGtgGACTTGAACCCCTgggaccatgcttcaggactacctgacatgatgactccttgctgtccacctggccttgccgctgttccagtttcaactgttctgcctgcggctatggaaccctaaactgtacATTTTTTTCTCTTGGGGTGCTGTACTGTTGCACACTCTACAaacactgtgatctccacccggcacagccagaagaggactggccacccctcattgccttgtttcttcctaggtttttgcctttctaggttGTTTTTCCTGTTTTTCCTATTTGATACAGGACTGAGGATGTGtaaaagtgtgtaaatagttacccatgttactttgtaaatgtgtatat
>XM_036985464.1
tttctttcacagtggcactgactccgactgggagcccccagtgccaaggtgtccatccccctctgaagctggttcatccagctgtacccctgctgtctctggctccacacctcccgggccatctagaggtgtgaagaggaagaggggaagtgtGCCACCCACTAACAGAGGGACAGAAGGGCGTTGGCACACCATCCTAGAAGATGATGTGGAGCCACCACAACCAACTTTCAGGCCGAAAAGGAAGCCAGGACCTCAGGTGAACCGCTCTACCACAGCATCGTCGAGGCCTGCAAGACGTACTTTCAGCCTGCCCAGAACGTGTCAAtcgatgagaggatggtagcctcaaaggcAAGAATTGGCCTCAAACAATACATGAGAAACAAACCAACCAAGTGGGGTTACAAGctgtttgttttggctgattctGTATGTGCCTACACATGCAATTTCTTTGTCTACGAGGGGAAGAACAGTTTTGCTACCGGTAAGGGACTCAGCTATGACTCTGTAATggagttattggattttcaactgctagggaagggctacaaactgtttgtggataacttctacacaagccctaccctgtttGCAGACCTAAGGAAGCTGGATGTAtgggcttgtggcaccattcgtACCAACAGGGTGGGCTTTCCGAAGACTAAGGTGAACGACATGCCTAAGCGGGCTGAGCGGGGGAGCATGCGATGGATCCGTGAAGATGGCCTGCTTTTTGTAAAGTGGATGGATACCAGAGAGGTGGTGATGTGCTCCActatccacaagtccttcagtgggGATCATGTTGTCAGGTGTGTGAAGtgGACTTGAACCCCTgggaccatg

Function

NR:

description
piggyBac transposable element-derived protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985463.1 False 1163 mRNA 0.50 2 40143911 40145193
XM_036985464.1 True 852 mRNA 0.52 2 40144232 40145193

Neighbor

gene id symbol gene type direction distance location
slc22a16 LOC106571810 coding downstream 126744 39956961 ~ 40017167 (-)
LOC110531091 NA coding downstream 1090512 39050749 ~ 39053399 (-)
LOC118965515 NA coding downstream 1319866 38822129 ~ 38826089 (-)
LOC110530913 NA coding downstream 1341959 38787513 ~ 38801952 (-)
trnal-uaa-3 NA coding downstream 1703631 38440198 ~ 38440280 (-)
armc2 armc2 coding upstream 493078 40638271 ~ 40669501 (-)
LOC110529912 LOC106571799 coding upstream 579204 40724397 ~ 40779631 (-)
LOC118965517 NA coding upstream 634658 40779851 ~ 40800037 (-)
LOC110529916 LOC106571797 coding upstream 812949 40958142 ~ 40969478 (-)
LOC118965611 NA coding upstream 1580328 41725469 ~ 41728987 (-)
G707234 NA non-coding downstream 39751 40102600 ~ 40104160 (-)
G707168 NA non-coding downstream 119275 40024389 ~ 40024636 (-)
G707129 NA non-coding downstream 221915 39920496 ~ 39921996 (-)
G707140 NA non-coding downstream 236223 39907405 ~ 39907688 (-)
G707137 NA non-coding downstream 240810 39902621 ~ 39903101 (-)
G707316 NA non-coding upstream 119344 40264537 ~ 40269554 (-)
G707362 NA non-coding upstream 195253 40340446 ~ 40340669 (-)
G707366 NA non-coding upstream 201653 40346846 ~ 40347214 (-)
G707374 NA non-coding upstream 212156 40357349 ~ 40357567 (-)
G707408 NA non-coding upstream 278961 40424154 ~ 40424902 (-)
G706683 stxbp5 other downstream 917598 39219644 ~ 39226313 (-)
G704874 NA other downstream 1830108 38313489 ~ 38313803 (-)
G704702 NA other downstream 2105565 38037725 ~ 38038346 (-)
LOC110530908 otof other downstream 2651754 37474229 ~ 37626960 (-)
G709272 NA other upstream 2574578 42719771 ~ 42720699 (-)
G709454 NA other upstream 3025567 43170760 ~ 43171082 (-)
G711133 NA other upstream 4393600 44538793 ~ 44539504 (-)
G712814 NA other upstream 5312584 45457777 ~ 45458248 (-)
crfb16 LOC106568648 other upstream 6165937 46309732 ~ 46325685 (-)

Expression


Co-expression Network