LOC118965517


Basic Information

Item Value
gene id LOC118965517
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 40779851 ~ 40800037 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052876.1
TGACATTATTAGGGGCTAAACAGCAGCGCTAACAcagctcctccctctcctttcagATCTGTACAAAAACGGACTTCAGAGGGACACCTTCCTACCTTTCATCGACGCGTTGAAGGTGAAGACTAAGTCATCCCTTCTTCGCTCCTCTGTGTCTTTTTTAAAAATGGGTTTTCTACCTGAGAAGCACACAGTGTCACACACGGTGTCACAAAGCTGTCTTCGGTCATACCTGGTGATGGTGAAAGACTCAaacggacacagagagagcgagggtGAGGGTGGTGCTGTTGGCTGAGGCTTCTCTGGAGGGAGGAAGGACGACCGCAAACGCCAGCTACTCGACATCCTGGTTCTGAGCGGGGTGGACCACGGCCCAACCACAGCAAGATCACAACATGACCACAAACACATTCCTTGATATAAACATCTCTGTTATTGTGTTGTTAACCCCTCTGTTTGTGGCTGTTTGTGTTAAACCCTCTTGGTGGTCATGTTTGTGTCAACCCGATTGTTTTTGGTAATGTTTGTGTCAACCCGATTTGTTTTTGGTAATGGTTTAGCCCACTGTTTGAGGTTTTGGTAATGGTTAACCccactgtttgaggttgtggttcTGTTAATGACTCTGTTCTGTGGTCCTGTTTGTAGGATGTGGGGGACTGCCTGTCTCTGTTCACAGCAGAGGAGGAGATCTTTACGTTTCAGAGGACCATCTCAGTCCAGACTGACCGAGATGCAGACGGAGATGTACTGGACCCAAAGGGACCGATTTCACACAGCACACACAAAATGTGTTGGATGCCTCCGGGTTCATTCAAATGGCAGGCATGGCTTGAACGAGCTGAAGAGAGAAACTGACTGAAATGCTGGGCTGACTTTATACATTTCTACCAGAAGATGGCAGCAAATGATGGCCTACAGAAGCATTCATTCATCCACCCCCTgtgtccctttcctctctctgatGCCCAAAGACATTGTACCAAGTTGGGTCAGAGCCCTTCTCGCAAGCAAGGGGGAGGCCGATGACATAAGAGCATCAGACTAACTCCTTGAATGGCAtactccttgaagtttgcagttgtctaaaaaacactattttgcttaaaatgtatttttcttacCCTTAAGTGGatgtacattactgtatttatacttgggatattgtttttcaacaggaaaggTTCAAATATAGCTGGAGTGTGTCTTTAACCCTCCACTGCAGTAGCTAACTGCAGGCACCAAACTGCTGTATCAGCCATTCCTCTTTATATACATAGCTGGGACAGGAGGAACAAAGAGGAGCATGTTTACATGTGAGCGTGCGTGCATTCGTTCTTGTGTTAATTTtgtatacagaacaaaaatataaacgcaacatgcaacaatttgaaaGATTTTATTGAGTTCATAGAAGGAAGTCAGTCATTTGAAATAGTCAGTATACATGCATGTGTATGTACTTCGTTTGTTATAATTATAAATGAAATAGTGTTGATGTTTTCCATGTAAAATTCAAAGCCATAACACAACCAATGCCTtgcagaatgtgtgtgttttgtctgatTTAGTATATAGGATTGTTATCCATTCCTAATCAATGCCATCCGTTCCAAGAATGAATTGATGAATACCGCGCACAGGTGGAATTCGCGCATTCCTGTACATAAATCGAGAGAGCGTGTCCCCCCTGCAAGGTGGACGCGCACTTTACACAACATCTTCTCTGGAACAAAGACGTATGGAGGCTGACTGATGCTGGTGTTTTGGTACGGTTTTGGTACGGTcttggaggtgggaggggaggggaggggcaaCCACTCCGAAGTATCACATACAGGACAGATAACCATAGCATTTATTCCCTTATCTCTTCATTATGAATGACGTCATGTGTTTGAAGAGGTCGATCTGGTTTGAAGGGGGCGTGTTCTGCGCGTGCTGTCCACATTGATTGACACCCATGCTCACGGATTAAAGGTTTAAAGATACTGTCATTAAAAGAAAAATGACTTAACTTGACTTAAAGACTTCACTATTTCATTATAATATTTGGTAGAATGCATGTCATTTAAGTTATGAATAAAGTATAGGCTAATATCCAACACAAGGAAAACAAACACCTACTTGCATATACCTAAATTGTTAcatatgtgtaggcctatgtcaGTTGTTACATTCTAACAGTGCACCACAGCGGAAGTGGAAATAATGCTACATATGTCAACCATACCTTTAACAATA
>XR_005052877.1
TGACATTATTAGGGGCTAAACAGCAGCGCTAACAcagctcctccctctcctttcagATCTGTACAAAAACGGACTTCAGAGGGACACCTTCCTACCTTTCATCGACGCGTTGAAGGTGAAGACTAAGTCATCCCTTCTTCGCTCCTCTGTGTCTTTTTTAAAAATGGGTTTTCTACCTGAGAAGCACACAGTGTCACACACGGTGTCACAAAGCTGTCTTCGGTCATACCTGGTGATGGTGAAAGACTCAaacggacacagagagagcgagggtGAGGGTGGTGCTGTTGGCTGAGGCTTCTCTGGAGGGAGGAAGGACGACCGCAAACGCCAGCTACTCGACATCCTGGTTCTGAGCGGGGTGGACCACGGCCCAACCACAGCAAGATCACAACATGACCACAAACACATTCCTTGATATAAACATCTCTGTTATTGTGTTGTTAACCCCTCTGTTTGTGGCTGTTTGTGTTAAACCCTCTTGGTGGTCATGTTTGTGTCAACCCGATTGTTTTTGGTAATGTTTGTGTCAACCCGATTTGTTTTTGGTAATGGTTTAGCCCACTGTTTGAGGTTTTGGTAATGGTTAACCccactgtttgaggttgtggttcTGTTAATGACTCTGTTCTGTGGTCCTGTTTGTAGGATGTGGGGGACTGCCTGTCTCTGTTCACAGCAGAGGAGGAGATCTTTACGTTTCAGAGGACCATCTCAGTCCAGACTGACCGAGATGCAGACGGAGATGTACTGGACCCAAAGGGACCGATTTCACACAGCACACACAAAATGTGTTGGATGCCTCCGGGTTCATTCAAATGGCAGGCATGGCTTGAACGAGCTGAAGAGAGAAACTGACTGAAATGCTGGGCTGACTTTATACATTTCTACCAGAAGATGGCAGCAAATGATGGaACAGCCTACAGAAGCATTCATTCATCCACCCCCTgtgtccctttcctctctctgatGCCCAAAGACATTGTACCAAGTTGGGTCAGAGCCCTTCTCGCAAGCAAGGGGGAGGCCGATGACATAAGAGCATCAGACTAACTCCTTGAATGGCAtactccttgaagtttgcagttgtctaaaaaacactattttgcttaaaatgtatttttcttacCCTTAAGTGGatgtacattactgtatttatacttgggatattgtttttcaacaggaaaggTTCAAATATAGCTGGAGTGTGTCTTTAACCCTCCACTGCAGTAGCTAACTGCAGGCACCAAACTGCTGTATCAGCCATTCCTCTTTATATACATAGCTGGGACAGGAGGAACAAAGAGGAGCATGTTTACATGTGAGCGTGCGTGCATTCGTTCTTGTGTTAATTTtgtatacagaacaaaaatataaacgcaacatgcaacaatttgaaaGATTTTATTGAGTTCATAGAAGGAAGTCAGTCATTTGAAATAGTCAGTATACATGCATGTGTATGTACTTCGTTTGTTATAATTATAAATGAAATAGTGTTGATGTTTTCCATGTAAAATTCAAAGCCATAACACAACCAATGCCTtgcagaatgtgtgtgttttgtctgatTTAGTATATAGGATTGTTATCCATTCCTAATCAATGCCATCCGTTCCAAGAATGAATTGATGAATACCGCGCACAGGTGGAATTCGCGCATTCCTGTACATAAATCGAGAGAGCGTGTCCCCCCTGCAAGGTGGACGCGCACTTTACACAACATCTTCTCTGGAACAAAGACGTATGGAGGCTGACTGATGCTGGTGTTTTGGTACGGTTTTGGTACGGTcttggaggtgggaggggaggggaggggcaaCCACTCCGAAGTATCACATACAGGACAGATAACCATAGCATTTATTCCCTTATCTCTTCATTATGAATGACGTCATGTGTTTGAAGAGGTCGATCTGGTTTGAAGGGGGCGTGTTCTGCGCGTGCTGTCCACATTGATTGACACCCATGCTCACGGATTAAAGGTTTAAAGATACTGTCATTAAAAGAAAAATGACTTAACTTGACTTAAAGACTTCACTATTTCATTATAATATTTGGTAGAATGCATGTCATTTAAGTTATGAATAAAGTATAGGCTAATATCCAACACAAGGAAAACAAACACCTACTTGCATATACCTAAATTGTTAcatatgtgtaggcctatgtcaGTTGTTACATTCTAACAGTGCACCACAGCGGAAGTGGAAATAATGCTACATATGTCAACCATACCTTTAACAATA
>XR_005052878.1
TGACATTATTAGGGGCTAAACAGCAGCGCTAACAcagctcctccctctcctttcagATCTGTACAAAAACGGACTTCAGAGGGACACCTTCCTACCTTTCATCGACGCGTTGAAGGTGAAGACTAAGTCATCCCTTCTTCGCTCCTCTGTGTCTTTTTTAAAAATGGGTTTTCTACCTGAGAAGCACACAGTGTCACACACGGTGTCACAAAGCTGTCTTCGGTCATACCTGGTGATGGTGAAAGACTCAaacggacacagagagagcgagggtGAGGGTGGTGCTGTTGGCTGAGGCTTCTCTGGAGGGAGGAAGGACGACCGCAAACGCCAGCTACTCGACATCCTGGTTCTGAGCGGGGTGGACCACGGCCCAACCACAGCAAGATCACAACATGACCACAAACACATTCCTTGATATAAACATCTCTGTTATTGTGTTGTTAACCCCTCTGTTTGTGGCTGTTTGTGTTAAACCCTCTTGGTGGTCATGTTTGTGTCAACCCGATTGTTTTTGGTAATGTTTGTGTCAACCCGATTTGTTTTTGGTAATGGTTTAGCCCACTGTTTGAGGTTTTGGTAATGGTTAACCccactgtttgaggttgtggttcTGTTAATGACTCTGTTCTGTGGTCCTGTTTGTAGGATGTGGGGGACTGCCTGTCTCTGTTCACAGCAGAGGAGGAGATCTTTACGTTTCAGAGGACCATCTCAGTCCAGACTGACCGAGATGCAGACGGAGATGTACTGGACCCAAAGGGACCGATTTCACACAGCACACACAAAGTGAGGATCCGCAGTAAAGTACTTCTAAAGACCTGAAAACACATAGAGGGGACAGATGTGTTGGATGCCTCCGGGTTCATTCAAATGGCAGGCATGGCTTGAACGAGCTGAAGAGAGAAACTGACTGAAATGCTGGGCTGACTTTATACATTTCTACCAGAAGATGGCAGCAAATGATGGCCTACAGAAGCATTCATTCATCCACCCCCTgtgtccctttcctctctctgatGCCCAAAGACATTGTACCAAGTTGGGTCAGAGCCCTTCTCGCAAGCAAGGGGGAGGCCGATGACATAAGAGCATCAGACTAACTCCTTGAATGGCAtactccttgaagtttgcagttgtctaaaaaacactattttgcttaaaatgtatttttcttacCCTTAAGTGGatgtacattactgtatttatacttgggatattgtttttcaacaggaaaggTTCAAATATAGCTGGAGTGTGTCTTTAACCCTCCACTGCAGTAGCTAACTGCAGGCACCAAACTGCTGTATCAGCCATTCCTCTTTATATACATAGCTGGGACAGGAGGAACAAAGAGGAGCATGTTTACATGTGAGCGTGCGTGCATTCGTTCTTGTGTTAATTTtgtatacagaacaaaaatataaacgcaacatgcaacaatttgaaaGATTTTATTGAGTTCATAGAAGGAAGTCAGTCATTTGAAATAGTCAGTATACATGCATGTGTATGTACTTCGTTTGTTATAATTATAAATGAAATAGTGTTGATGTTTTCCATGTAAAATTCAAAGCCATAACACAACCAATGCCTtgcagaatgtgtgtgttttgtctgatTTAGTATATAGGATTGTTATCCATTCCTAATCAATGCCATCCGTTCCAAGAATGAATTGATGAATACCGCGCACAGGTGGAATTCGCGCATTCCTGTACATAAATCGAGAGAGCGTGTCCCCCCTGCAAGGTGGACGCGCACTTTACACAACATCTTCTCTGGAACAAAGACGTATGGAGGCTGACTGATGCTGGTGTTTTGGTACGGTTTTGGTACGGTcttggaggtgggaggggaggggaggggcaaCCACTCCGAAGTATCACATACAGGACAGATAACCATAGCATTTATTCCCTTATCTCTTCATTATGAATGACGTCATGTGTTTGAAGAGGTCGATCTGGTTTGAAGGGGGCGTGTTCTGCGCGTGCTGTCCACATTGATTGACACCCATGCTCACGGATTAAAGGTTTAAAGATACTGTCATTAAAAGAAAAATGACTTAACTTGACTTAAAGACTTCACTATTTCATTATAATATTTGGTAGAATGCATGTCATTTAAGTTATGAATAAAGTATAGGCTAATATCCAACACAAGGAAAACAAACACCTACTTGCATATACCTAAATTGTTAcatatgtgtaggcctatgtcaGTTGTTACATTCTAACAGTGCACCACAGCGGAAGTGGAAATAATGCTACATATGTCAACCATACCTTTAACAATA

Function

NR:

description
PREDICTED: lactation elevated protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052876.1 False 2244 mRNA 0.43 4 40779851 40800037
XR_005052877.1 False 2249 mRNA 0.43 4 40779851 40800037
XR_005052878.1 True 2299 mRNA 0.43 4 40779851 40800037
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110529912 LOC106571799 coding downstream 220 40724397 ~ 40779631 (-)
armc2 armc2 coding downstream 110350 40638271 ~ 40669501 (-)
LOC110530919 cdc40 coding downstream 614875 40132191 ~ 40164976 (-)
LOC118965516 LOC106588149 coding downstream 634658 40143911 ~ 40145193 (-)
slc22a16 LOC106571810 coding downstream 762684 39956961 ~ 40017167 (-)
LOC110529916 LOC106571797 coding upstream 158105 40958142 ~ 40969478 (-)
LOC118965611 NA coding upstream 925484 41725469 ~ 41728987 (-)
klhl18 klhl18 coding upstream 1540645 42340682 ~ 42420087 (-)
puf60a puf60 coding upstream 1631754 42431791 ~ 42526586 (-)
mycb myc coding upstream 2799717 43599754 ~ 43602305 (-)
G707817 NA non-coding downstream 61963 40716415 ~ 40717888 (-)
G707849 NA non-coding downstream 71450 40708042 ~ 40708401 (-)
G707847 NA non-coding downstream 75124 40704210 ~ 40704727 (-)
G707843 NA non-coding downstream 82263 40697388 ~ 40697588 (-)
G707801 NA non-coding downstream 143784 40635454 ~ 40636067 (-)
G707884 NA non-coding upstream 12751 40812788 ~ 40819330 (-)
G707905 yo84 non-coding upstream 31930 40831967 ~ 40832338 (-)
G707907 NA non-coding upstream 35862 40835899 ~ 40836131 (-)
G707917 NA non-coding upstream 44255 40844292 ~ 40844519 (-)
G708154 NA non-coding upstream 75179 40875216 ~ 40910989 (-)
G706683 stxbp5 other downstream 1553538 39219644 ~ 39226313 (-)
G704874 NA other downstream 2466048 38313489 ~ 38313803 (-)
G704702 NA other downstream 2741505 38037725 ~ 38038346 (-)
LOC110530908 otof other downstream 3287694 37474229 ~ 37626960 (-)
G709272 NA other upstream 1919734 42719771 ~ 42720699 (-)
G709454 NA other upstream 2370723 43170760 ~ 43171082 (-)
G711133 NA other upstream 3738756 44538793 ~ 44539504 (-)
G712814 NA other upstream 4657740 45457777 ~ 45458248 (-)
crfb16 LOC106568648 other upstream 5511093 46309732 ~ 46325685 (-)

Expression

LOC118965517 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.3.
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LOC118965517 Expression in each Bioproject

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LOC118965517 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
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Co-expression Network