LOC110529916 (LOC106571797)


Basic Information

Item Value
gene id LOC110529916
gene name LOC106571797
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 40958142 ~ 40969478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612576.2
ATATTAATTCACAGATAGTCGCATCTAAACAGCCCAGTGTTTTCTTTCCCACTTCACTTGCCTCCAAGCGAGTCCTGTGAGCCGGGTGACGTCATGCTGGCACACAGAAGTTGGGAGTAGAAAGCATGGAAAAGCTAAGTGGGTGAAGCAAGCGGAATTCTCCACCCTCCGCCTTTTCTGACACTTCTCGTAAATATTACAGTTAAGAAGAGCCTTGTTTTGTTGTTGGTTTAGACTGGACTCGCTGGGTAGTCCGTCTGTTCAGGAGCGCCGATCCGGCATTTTTCTAAACAACTTTGTGCGCGGTGTTGAGCTCCGAGCAACGGTGGAGCTGTTGCCACTCGCCGCTTGTAGACGGATCTCTATCCGGTTTTCGCGCTACTGGCCACACTGCCTGGACCTTGTGTGACTCAACGTCCAAGATTTGCAAATACTCCATAATCCATCTTGGTAACTAGAATTTGGTAATCCTTGGAAAATATCAAATTGGGCGACATTACAGAAATCGAATTGTTTTAAGGAAAACTGTAGGCTATATTTCATTTTTTGATATTCTTCAGCTGTTACTTTTGCACCGACAGTGGATTTTGATTGTTAAAATATAAAACAGTGTAGAACGACACTGTCCACGATGAGCAAAGCCACCTGTTCAACAAGTGGGTGTTTGGATATTCTGAATGTTAAATCAAGTCGTATCTTGGATATCCCGTGTAAAGTGTGTGGGGACCGGAGCTCTGGGAAACACTATGGCGTGTATGCGTGTGACGGCTGCTCTGGCTTCTTCAAGAGGAGCATCCGTAGAAACAGAACATACGTCTGTAAATCAGGCTGTCAGGGAGGATGCCCCGTGGACAAAACGCACAGAAACCAATGCCGAGCGTGCCGCTTGAAAAAGTGTCTCGAAGTGAACATGAATAAAGATGCCGTTCAGCACGAGAGGGGTCCCAGGACGTCCACCATACGCAAGCAGGTCGCCCTATATTTCCGGGGGCACAAAGAGGTGAACGGTTCATCGACCCACTTCCCGGGCTCGAGCCTACCGGGGCCGCCTTTGTTCACTACGGTCACACAACTGGAGCCACATAACTTGGAGATGAGCACAGTAGCCTGCACGCCGGAGAGGCAGGCCATCGTGGGACTGGCCCAGCCCACCCCGAAGTACCCTCACGAGGTCGGCGGCACACCCATGTATCTCTATGAGGTTGCTACTGAGTCGGTGTGTGAGTCAGCCGCGCGCCTGCTGTTCATGAGCATCAAGTGGGCCAAGAGCGTGCCCGCCTTCTCCACGCTCCCCTTACCTGACCAGCTAATCCTCCTGGAGGAAGCCTGGAGAGAACTGTTTGTTCTGGGCATAGCGCAGTGGGCCATTCCGGTGGACTCCAAAACCCTGCTCGCTGTTTCCGGTATGaatacagacaacacagagtcCCAGCGGATGAATAAAATAATCTCCGAAATACAAACCCTGCAAGAGGTCGTTACCTGGTTCAGACAGCTGCGCCTGGACGCAACTGAGTTCGCCTGTTTGAAGTGCATCGTCACGTTTAAAGCTGCAGTGCCAACGCATGACGGGTCGGAGTTGAGGAGTTTCCGCAACGCCAGTGCCATTGCTGCACTCCAGGATGAGGCACAGCTCACCCTAAACAGTTACATACACACCAGATATCCAACTCAGCCCTGCCGCTTTGGGAAGCTGCTCCTACTTCTACCAGCTCTGCGGTCAGTCAGCCCATCCACCATAGAAGAAGTATTTTTCAAGAAGACCATTGGGAACGTGCCCATCACAAGGCTCCTCGCTGACATGTACAAATCAAGCGATATATGAGTTTATTTCCGCCATATCAACATTACGCTCACTAGCCAAGAGTGTCTGTTAAGGCTCATAGACACAAACATTCTAATGAGCACGTGACAAATTGAACTTGAAGAACATAAAAACCTTGATTTTACCAATCTTTGGGTTAGGCTTACGTTTTgaggatgtatactgaacagaaatataaacagaacatgtaaagcattggtcccatgtttcatgagctgaaataaaagaccccagatTTTTTCCTTACgctcaaaaagcttatttctctcaa
>XM_036985475.1
CGTAATATTAATTCACAGATAGTCGCATCTAAACAGCCCAGTGTTTTCTTTCCCACTTCACTTGCCTCCAAGCGAGTCCTGTGAGCCGGGTGACGTCATGCTGGCACACAGAAGTTGGGAGTAGAAAGCATGGAAAAGCTAAGTGGGTGAAGCAAGCGGAATTCTCCACCCTCCGCCTTTTCTGACACTTCTCGTAAATATTACAGTTAAGAAGAGCCTTGTTTTGTTGTTGGTTTAGACTGGACTCGCTGGGTAGTCCGTCTGTTCAGGAGCGCCGATCCGGCATTTTTCTAAACAACTTTGTGCGCGGTGTTGAGCTCCGAGCAACGGTGGAGCTGTTGCCACTCGCCGCTTGTAGACGGATCTCTATCCGGTTTTCGCGCTACTGGCCACACTGCCTGGACCTTGTGTGACTCAACGTCCAAGATTTGCAAATACTCCATAATCCATCTTGGTAACTAGAATTTGGTAATCCTTGGAAAATATCAAATTGGGCGACATTACAGAAATCGAATTGTTTTAAGGAAAACTGTAGGCTATATTTCATTTTTTGATATTCTTCAGCTGTTACTTTTGCACCGACAGTGGATTTTGATTGTTAAAATATAAAACAGTGTAGAACGACACTGTCCACGATGAGCAAAGCCACCTGTTCAACAAGTGGGTGTTTGGATATTCTGAATGTTAAATCAAGTCGTATCTTGGATATCCCGTGTAAAGTGTGTGGGGACCGGAGCTCTGGGAAACACTATGGCGTGTATGCGTGTGACGGCTGCTCTGGCTTCTTCAAGAGGAGCATCCGTAGAAACAGAACATACGTCTGTAAATCAGGCTGTCAGGGAGGATGCCCCGTGGACAAAACGCACAGAAACCAATGCCGAGCGTGCCGCTTGAAAAAGTGTCTCGAAGTGAACATGAATAAAGATGCCGTTCAGCACGAGAGGGGTCCCAGGACGTCCACCATACGCAAGCAGGTCGCCCTATATTTCCGGGGGCACAAAGAGGTGAACGGTTCATCGACCCACTTCCCGGGCTCGAGCCTACCGGGGCCGCCTTTGTTCACTACGGTCACACAACTGGAGCCACATAACTTGGAGATGAGCACAGTAGCCTGCACGCCGGAGAGGCAGGCCATCGTGGGACTGGCCCAGCCCACCCCGAAGTACCCTCACGAGGTCGGCGGCACACCCATGTATCTCTATGAGGTTGCTACTGAGTCGGTGTGTGAGTCAGCCGCGCGCCTGCTGTTCATGAGCATCAAGTGGGCCAAGAGCGTGCCCGCCTTCTCCACGCTCCCCTTACCTGACCAGCTAATCCTCCTGGAGGAAGCCTGGAGAGAACTGTTTGTTCTGGGCATAGCGCAGTGGGCCATTCCGGTGGACTCCAAAACCCTGCTCGCTGTTTCCGGTATGaatacagacaacacagagtcCCAGCGGATGAATAAAATAATCTCCGAAATACAAACCCTGCAAGAGGTCGTTACCTGGTTCAGACAGCTGCGCCTGGACGCAACTGAGTTCGCCTGTTTGAAGTGCATCGTCACGTTTAAAGCTGTGCCAACGCATGACGGGTCGGAGTTGAGGAGTTTCCGCAACGCCAGTGCCATTGCTGCACTCCAGGATGAGGCACAGCTCACCCTAAACAGTTACATACACACCAGATATCCAACTCAGCCCTGCCGCTTTGGGAAGCTGCTCCTACTTCTACCAGCTCTGCGGTCAGTCAGCCCATCCACCATAGAAGAAGTATTTTTCAAGAAGACCATTGGGAACGTGCCCATCACAAGGCTCCTCGCTGACATGTACAAATCAAGCGATATATGAGTTTATTTCCGCCATATCAACATTACGCTCACTAGCCAAGAGTGTCTGTTAAGGCTCATAGACACAAACATTCTAATGAGCACGTGACAAATTGAACTTGAAGAACATAAAAACCTTGATTTTACCAATCTTTGGGTTAGGCTTACGTTTTgaggatgtatactgaacagaaatataaacagaacatgtaaagcattggtcccatgtttcatgagctgaaataaaagaccccagatTTTTTCCTTACgctcaaaaagcttatttctctcaa

Function

NR:

description
nuclear receptor subfamily 2 group E member 1-like

GO: NA

KEGG:

id description
K08545 NR2E1, TLX, tll; nuclear receptor subfamily 2 group E member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612576.2 False 2096 mRNA 0.49 9 40958142 40969474
XM_036985475.1 True 2097 mRNA 0.49 9 40958142 40969478

Neighbor

gene id symbol gene type direction distance location
LOC118965517 NA coding downstream 158105 40779851 ~ 40800037 (-)
LOC110529912 LOC106571799 coding downstream 178511 40724397 ~ 40779631 (-)
armc2 armc2 coding downstream 288641 40638271 ~ 40669501 (-)
LOC110530919 cdc40 coding downstream 793166 40132191 ~ 40164976 (-)
LOC118965516 LOC106588149 coding downstream 812949 40143911 ~ 40145193 (-)
LOC118965611 NA coding upstream 756043 41725469 ~ 41728987 (-)
klhl18 klhl18 coding upstream 1371204 42340682 ~ 42420087 (-)
puf60a puf60 coding upstream 1462313 42431791 ~ 42526586 (-)
mycb myc coding upstream 2630276 43599754 ~ 43602305 (-)
LOC118965613 NA coding upstream 2789851 43759329 ~ 43763318 (-)
G708169 NA non-coding downstream 662 40956893 ~ 40957480 (-)
G708154 NA non-coding downstream 47153 40875216 ~ 40910989 (-)
G707917 NA non-coding downstream 113623 40844292 ~ 40844519 (-)
G707907 NA non-coding downstream 122011 40835899 ~ 40836131 (-)
G707905 yo84 non-coding downstream 125804 40831967 ~ 40832338 (-)
G708214 NA non-coding upstream 65 40969543 ~ 40969774 (-)
G708229 NA non-coding upstream 57123 41026601 ~ 41039666 (-)
G708363 NA non-coding upstream 272063 41241541 ~ 41241912 (-)
G708372 NA non-coding upstream 282383 41251861 ~ 41252065 (-)
G708382 NA non-coding upstream 297553 41267031 ~ 41267294 (-)
slc22a16 LOC106571810 other downstream 998529 39956961 ~ 40017167 (-)
G706683 stxbp5 other downstream 1731829 39219644 ~ 39226313 (-)
G704874 NA other downstream 2644339 38313489 ~ 38313803 (-)
G704702 NA other downstream 2919796 38037725 ~ 38038346 (-)
LOC110530908 otof other downstream 3465985 37474229 ~ 37626960 (-)
G709272 NA other upstream 1750293 42719771 ~ 42720699 (-)
G709454 NA other upstream 2201282 43170760 ~ 43171082 (-)
G711133 NA other upstream 3569315 44538793 ~ 44539504 (-)
G712814 NA other upstream 4488299 45457777 ~ 45458248 (-)
crfb16 LOC106568648 other upstream 5341652 46309732 ~ 46325685 (-)

Expression


Co-expression Network