puf60a (puf60)


Basic Information

Item Value
gene id puf60a
gene name puf60
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 42431791 ~ 42526586 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612584.2
TGGTGATGTTAGTATCACGTTTATAGTCATAACGAGCTCAAAATTCCATTGCTTGAAACGGATCAGTAACTTAGCTGTCATTTTCAGACCACTGTGGCTAGGAAATAAAATCGGCCGCTCCTCCCGGAGGCGAGGCTCTGATGATGGAGAATGGACAGAGCACCGCCTCAAAGCTCGGCCTGCCGCCTCTCACCCCTGAGCAGCAGGAGGCACTGCAGAAGGCGAAGAAGTATGCCATGGAGCAAAGCATTAAAAGTGTGCTTGTCAAACAGACCCTGGCTCATCAACAACAGCAGCTCACCAACTTACAGATGGCATCGCTGACAATGGGCTTTGGCGATCCCCTCTCACCTTTACAATCGGTAGCGGCTCAGAGACAGCGAGCATTAGCCATCATGTGCCGAGTGTACGTGGGCTCCATTTACTACGAGCTGGGAGAGGACACGGTCCGGCAGGCCTTTGCCCCGTTCGGCCCCATCAAGAGCATCGACATGTCCTGGGACTCTGTTACAATGAAACACAAGGGTTTTGCGTTTGTGGAGTATGAGGTGCCTGAGGCAGCCCAGCTATCCCTTGAGCAGATGAACTCCGTTATGCTGGGAGGGAGAAACATTAAGGTGGGACGACCGAGCAACATCGGACAGGCCCAGCCGATCATTGACCAGCTGGCAGAAGAGGCACGCGCCTTCAACCGAATCTACGTGGCGTCTGTGCACCCCGACCTCTCGGACGAGGACATCAAGAGTGTGTTTGAGGCGTTCGGCCGGATCAAGTCATGCACTCTAGCGAGAGACCCCACTACAGGGAAACACAAGAGCTACGGCTTTATTGAGTACGACAAGGCTCAGTCCTCCCAGGATGCAGTTTCCTCCATGAATCTCTTTGACCTAGGGGGTCAATACCTGCGTGTGGGCAAAGCGGTCACCCCCCCCATGCCCCTGCTCACTCCGACCACACCTGGCGGACTCCCCCCTGCTGCAGCTGTGGCGGCTGCAGCTGCCACAGCCAAAATCACTGCCCAGGAGACGGTTGGGTCATCGGTGCTGGGAGCGCTGGCTGGACCCGCCCTCCTCTCTCAACAGTTGGGTGGCCTGCCCCAAGCCGTCATGGCAGCCCAGGCCCCGGGGGTCATCACAGGGGTAACCCCAGTGCGGCCCACTTTGCCTGTGCTACCTCAGGTGGGCCTGGTCAACCCAGTGCTGGCCTTACCACCGGTGCTGGTCACCTCTCTGGTGGCAGCCCAGGAGGCCAAGAAGAAGGAATTGGAGGAGGAGGCCGTGCAGGACGGGACGGGCCAGGAGCCGCTGAGTGAGCAGGAGCACATGAGCATCTCCGGGAGCAGCGCCAGACACATGGTCATGCAGAAGTTGCTCCGTAAGCAAGAGGTGAGGTTGTCTTCTCatctagtgttgatgttgagAGTTTCAAACCATTTCAACGTGTGGATCACGGCCTCACGTCTTCTGTCGACGGTGATGGTGCTGCGGAACATGGTAGGACCAGAGGACATCGACGATGACCTGGAGGGTGAGGTGACTGAGGAGTGCGGCAAGTTTGGTGCTGTCAACCGTGTCATCATCTACCAGGAAAAGCAGGGCGAGGAGGATGATGCGGAGGTCATTGTCAAGATCTTTGTGGAGTTCTCCATGGCGGCAGAGATGAACAAGGCCATCCAGGCACTCAATAATCGCTGGTTTGGAGGTCGCAAGGTCATTGCTGAGGTGTACGACCAGGAGCGCTTTGACAACAGCGACTTATCTGCATAAGACGTTCTGACCTTTCTGAAAGATCTCTACTACGACCACAACCTctggtgtttctctctccctcacacacatacacacacacacttacacagacaAGGCTGCCACGCACCACTGTAGGTGATGCTGGGCTCTTTTtaaccagttttttttttatttttatcaatgttgatattaatattattaatGCTCCTGTTTGGGGACACCGACAAAGCAAGGAGACGCTAAGggattttttaattattattgtGGCCTACTGTGAAGGGCTGGATATTTGTTTCTGTATTGTTTTCAGTTTCATTTCCCTGATTTTAGTTTTATTTCGGTTACACCTTTTTTGATTAAGTCAATTCTACAAAGGTTCTCTTGTTATATAGCTCTTGGTGTTAATTGCCCAAAACAATAAATTCCTCATGAATTCATA
>XM_021612585.2
ATTAGAAGAAGAATTCCTCATTGGCGTCGCCCTGTGCTGAAAGGTGTGCTTCATGGCGGTGGCAGTTTCTGCGGGAGGCGAGGCTCTGATGATGGAGAATGGACAGAGCACCGCCTCAAAGCTCGGCCTGCCGCCTCTCACCCCTGAGCAGCAGGAGGCACTGCAGAAGGCGAAGAAGTATGCCATGGAGCAAAGCATTAAAAGTGTGCTTGTCAAACAGACCCTGGCTCATCAACAACAGCAGCTCACCAACTTACAGATGGCATCGCTGACAATGGGCTTTGGCGATCCCCTCTCACCTTTACAATCGGTAGCGGCTCAGAGACAGCGAGCATTAGCCATCATGTGCCGAGTGTACGTGGGCTCCATTTACTACGAGCTGGGAGAGGACACGGTCCGGCAGGCCTTTGCCCCGTTCGGCCCCATCAAGAGCATCGACATGTCCTGGGACTCTGTTACAATGAAACACAAGGGTTTTGCGTTTGTGGAGTATGAGGTGCCTGAGGCAGCCCAGCTATCCCTTGAGCAGATGAACTCCGTTATGCTGGGAGGGAGAAACATTAAGGTGGGACGACCGAGCAACATCGGACAGGCCCAGCCGATCATTGACCAGCTGGCAGAAGAGGCACGCGCCTTCAACCGAATCTACGTGGCGTCTGTGCACCCCGACCTCTCGGACGAGGACATCAAGAGTGTGTTTGAGGCGTTCGGCCGGATCAAGTCATGCACTCTAGCGAGAGACCCCACTACAGGGAAACACAAGAGCTACGGCTTTATTGAGTACGACAAGGCTCAGTCCTCCCAGGATGCAGTTTCCTCCATGAATCTCTTTGACCTAGGGGGTCAATACCTGCGTGTGGGCAAAGCGGTCACCCCCCCCATGCCCCTGCTCACTCCGACCACACCTGGCGGACTCCCCCCTGCTGCAGCTGTGGCGGCTGCAGCTGCCACAGCCAAAATCACTGCCCAGGAGACGGTTGGGTCATCGGTGCTGGGAGCGCTGGCTGGACCCGCCCTCCTCTCTCAACAGTTGGGTGGCCTGCCCCAAGCCGTCATGGCAGCCCAGGCCCCGGGGGTCATCACAGGGGTAACCCCAGTGCGGCCCACTTTGCCTGTGCTACCTCAGGTGGGCCTGGTCAACCCAGTGCTGGCCTTACCACCGGTGCTGGTCACCTCTCTGGTGGCAGCCCAGGAGGCCAAGAAGAAGGAATTGGAGGAGGAGGCCGTGCAGGACGGGACGGGCCAGGAGCCGCTGAGTGAGCAGGAGCACATGAGCATCTCCGGGAGCAGCGCCAGACACATGGTCATGCAGAAGTTGCTCCGTAAGCAAGAGTCGACGGTGATGGTGCTGCGGAACATGGTAGGACCAGAGGACATCGACGATGACCTGGAGGGTGAGGTGACTGAGGAGTGCGGCAAGTTTGGTGCTGTCAACCGTGTCATCATCTACCAGGAAAAGCAGGGCGAGGAGGATGATGCGGAGGTCATTGTCAAGATCTTTGTGGAGTTCTCCATGGCGGCAGAGATGAACAAGGCCATCCAGGCACTCAATAATCGCTGGTTTGGAGGTCGCAAGGTCATTGCTGAGGTGTACGACCAGGAGCGCTTTGACAACAGCGACTTATCTGCATAAGACGTTCTGACCTTTCTGAAAGATCTCTACTACGACCACAACCTctggtgtttctctctccctcacacacatacacacacacacttacacagacaAGGCTGCCACGCACCACTGTAGGTGATGCTGGGCTCTTTTtaaccagttttttttttatttttatcaatgttgatattaatattattaatGCTCCTGTTTGGGGACACCGACAAAGCAAGGAGACGCTAAGggattttttaattattattgtGGCCTACTGTGAAGGGCTGGATATTTGTTTCTGTATTGTTTTCAGTTTCATTTCCCTGATTTTAGTTTTATTTCGGTTACACCTTTTTTGATTAAGTCAATTCTACAAAGGTTCTCTTGTTATATAGCTCTTGGTGTTAATTGCCCAAAACAATAAATTCCTCATGAATTCATA
>XM_021612583.2
AGtccagtaggtggcggtaatgcacctttGAAGTTGGTTGCTAGGAGCCAATAAACTTCATTAGAAGAAGAATTCCTCATTGGCGTCGCCCTGTGCTGAAAGGTGTGCTTCATGGCGGTGGCAGTTTCTGCGGGAGGCGAGGCTCTGATGATGGAGAATGGACAGAGCACCGCCTCAAAGCTCGGCCTGCCGCCTCTCACCCCTGAGCAGCAGGAGGCACTGCAGAAGGCGAAGAAGTATGCCATGGAGCAAAGCATTAAAAGTGTGCTTGTCAAACAGACCCTGGCTCATCAACAACAGCAGCTCACCAACTTACAGATGGCATCGCTGACAATGGGCTTTGGCGATCCCCTCTCACCTTTACAATCGGTAGCGGCTCAGAGACAGCGAGCATTAGCCATCATGTGCCGAGTGTACGTGGGCTCCATTTACTACGAGCTGGGAGAGGACACGGTCCGGCAGGCCTTTGCCCCGTTCGGCCCCATCAAGAGCATCGACATGTCCTGGGACTCTGTTACAATGAAACACAAGGGTTTTGCGTTTGTGGAGTATGAGGTGCCTGAGGCAGCCCAGCTATCCCTTGAGCAGATGAACTCCGTTATGCTGGGAGGGAGAAACATTAAGGTGGGACGACCGAGCAACATCGGACAGGCCCAGCCGATCATTGACCAGCTGGCAGAAGAGGCACGCGCCTTCAACCGAATCTACGTGGCGTCTGTGCACCCCGACCTCTCGGACGAGGACATCAAGAGTGTGTTTGAGGCGTTCGGCCGGATCAAGTCATGCACTCTAGCGAGAGACCCCACTACAGGGAAACACAAGAGCTACGGCTTTATTGAGTACGACAAGGCTCAGTCCTCCCAGGATGCAGTTTCCTCCATGAATCTCTTTGACCTAGGGGGTCAATACCTGCGTGTGGGCAAAGCGGTCACCCCCCCCATGCCCCTGCTCACTCCGACCACACCTGGCGGACTCCCCCCTGCTGCAGCTGTGGCGGCTGCAGCTGCCACAGCCAAAATCACTGCCCAGGAGACGGTTGGGTCATCGGTGCTGGGAGCGCTGGCTGGACCCGCCCTCCTCTCTCAACAGTTGGGTGGCCTGCCCCAAGCCGTCATGGCAGCCCAGGCCCCGGGGGTCATCACAGGGGTAACCCCAGTGCGGCCCACTTTGCCTGTGCTACCTCAGGTGGGCCTGGTCAACCCAGTGCTGGCCTTACCACCGGTGCTGGTCACCTCTCTGGTGGCAGCCCAGGAGGCCAAGAAGAAGGAATTGGAGGAGGAGGCCGTGCAGGACGGGACGGGCCAGGAGCCGCTGAGTGAGCAGGAGCACATGAGCATCTCCGGGAGCAGCGCCAGACACATGGTCATGCAGAAGTTGCTCCGTAAGCAAGAGGTGAGGTTGTCTTCTCatctagtgttgatgttgagAGTTTCAAACCATTTCAACGTGTGGATCACGGCCTCACGTCTTCTGTCGACGGTGATGGTGCTGCGGAACATGGTAGGACCAGAGGACATCGACGATGACCTGGAGGGTGAGGTGACTGAGGAGTGCGGCAAGTTTGGTGCTGTCAACCGTGTCATCATCTACCAGGAAAAGCAGGGCGAGGAGGATGATGCGGAGGTCATTGTCAAGATCTTTGTGGAGTTCTCCATGGCGGCAGAGATGAACAAGGCCATCCAGGCACTCAATAATCGCTGGTTTGGAGGTCGCAAGGTCATTGCTGAGGTGTACGACCAGGAGCGCTTTGACAACAGCGACTTATCTGCATAAGACGTTCTGACCTTTCTGAAAGATCTCTACTACGACCACAACCTctggtgtttctctctccctcacacacatacacacacacacttacacagacaAGGCTGCCACGCACCACTGTAGGTGATGCTGGGCTCTTTTtaaccagttttttttttatttttatcaatgttgatattaatattattaatGCTCCTGTTTGGGGACACCGACAAAGCAAGGAGACGCTAAGggattttttaattattattgtGGCCTACTGTGAAGGGCTGGATATTTGTTTCTGTATTGTTTTCAGTTTCATTTCCCTGATTTTAGTTTTATTTCGGTTACACCTTTTTTGATTAAGTCAATTCTACAAAGGTTCTCTTGTTATATAGCTCTTGGTGTTAATTGCCCAAAACAATAAATTCCTCATGAATTCATA

Function

symbol description
puf60 Enables identical protein binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome; mRNA splice site selection; and regulation of alternative mRNA splicing, via spliceosome. Located in cell junction and nucleoplasm.

NR:

description
poly(U)-binding-splicing factor PUF60-like isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12838 PUF60; poly(U)-binding-splicing factor PUF60

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612584.2 False 2187 mRNA 0.53 12 42431791 42525669
XM_021612585.2 False 2054 mRNA 0.54 11 42431791 42526527
XM_021612583.2 True 2194 mRNA 0.53 12 42431791 42526586
Loading

Neighbor

gene id symbol gene type direction distance location
klhl18 klhl18 coding downstream 11704 42340682 ~ 42420087 (-)
LOC118965611 NA coding downstream 702804 41725469 ~ 41728987 (-)
LOC110529916 LOC106571797 coding downstream 1462313 40958142 ~ 40969478 (-)
LOC118965517 NA coding downstream 1631754 40779851 ~ 40800037 (-)
LOC110529912 LOC106571799 coding downstream 1652160 40724397 ~ 40779631 (-)
mycb myc coding upstream 1073168 43599754 ~ 43602305 (-)
LOC118965613 NA coding upstream 1232743 43759329 ~ 43763318 (-)
efr3a efr3a coding upstream 1658407 44184993 ~ 44436559 (-)
LOC110529930 NA coding upstream 1864292 44390878 ~ 44394639 (-)
LOC110529115 NA coding upstream 2454383 44980969 ~ 44984268 (-)
G709096 NA non-coding downstream 1615 42429418 ~ 42430176 (-)
G708852 NA non-coding downstream 105161 42326342 ~ 42326630 (-)
G708827 NA non-coding downstream 121146 42246963 ~ 42310645 (-)
G708740 NA non-coding downstream 147505 42280699 ~ 42284286 (-)
G708830 NA non-coding downstream 172075 42258575 ~ 42259716 (-)
G709197 NA non-coding upstream 53689 42580275 ~ 42627363 (-)
G709263 NA non-coding upstream 184957 42711543 ~ 42711868 (-)
G709282 NA non-coding upstream 204312 42730898 ~ 42741496 (-)
G709322 NA non-coding upstream 529032 43055618 ~ 43060881 (-)
G709329 NA non-coding upstream 543849 43070435 ~ 43070702 (-)
slc22a16 LOC106571810 other downstream 2472178 39956961 ~ 40017167 (-)
G706683 stxbp5 other downstream 3205478 39219644 ~ 39226313 (-)
G704874 NA other downstream 4117988 38313489 ~ 38313803 (-)
G704702 NA other downstream 4393445 38037725 ~ 38038346 (-)
LOC110530908 otof other downstream 4939634 37474229 ~ 37626960 (-)
G709272 NA other upstream 193185 42719771 ~ 42720699 (-)
G709454 NA other upstream 644174 43170760 ~ 43171082 (-)
G711133 NA other upstream 2012207 44538793 ~ 44539504 (-)
G712814 NA other upstream 2931191 45457777 ~ 45458248 (-)
crfb16 LOC106568648 other upstream 3784544 46309732 ~ 46325685 (-)

Expression

puf60a(puf60) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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puf60a(puf60) Expression in each Bioproject

Bar chart with 21 bars.
puf60a(puf60) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network