mycb (myc)


Basic Information

Item Value
gene id mycb
gene name myc
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 43599754 ~ 43602305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612591.2
CGCGGGAGCAGCTGTTGTTAATCTTGCAGTCAGTAGGGTGGTGATAGACACACGCAGCACTGGGCTCAAAGGACTTTACAACAACGGTGTTGACTTCGGCTCTTTTATTTCGCCTGCTTTCTCAACGAACAAGTATTTTGTTTGTGCTGTCACTGCTACGGCAGTCACAATGCCGCTGAATTCAAACATGGCCAGTAAAAACTATGACTACGACTATGACTCGGTCCAGCCCTACTTTTACTTCGACATTGAGGAGGATAATTTCTATCACCGGCAACACAGCCAACTCCAACCCCCTGCTCCAAGCGAGGATATATGGAAGAAATTCGAACTGCTGCCGACACCACCGCTTTCTCCCAGCCGGCGACCCTCTCTATCAAGCCTCTTCCCTTCGACTGCAGACCAGCTGGAGATGGTCACGGAATTTCTCGGGGATGACGTGGTGAACCATAGTTTCATTTGTGACGCGGACTACTCCCAGTCTTTTCTCAAATCTATCATTATCCGGGACTGTATGTGGAGCAGTTTTTCGGCTGCTGCTAAACTGGAGAAAGTAGTGTCCGAGAGACTAGCAACGCTGCAAGCGAGAAGGGACTCTAGCGTGGCCGGGGAAGCTAGCGCAGTAACCAGCACGAATCTAAACTTGAATTACCTGCAAGACCTGAATAACTCCGCATCGGAATGCATTGACCCTTCTGTGGTGTTCCCTTACCCGGTTGCCGAGAACCCTAAACACACAAAAACGACTACAGCGTGTGCCATGGCATTGCCTTTGGATACCCCACCGAACAGTGGTAGCAGCAGCGATAGCGATTCAGaggaagaggaggaagaagagattgACGTGGTGACAGTGGAAAAGAGAAAGTCTGTAAGGAGGTCAGACTTGCACATGTCTAGTAGCACACACCTCTGCCCCCTTGTCCTGAAAAGGTGTCACGTCAACATCCACCAACACAACTACGCCGCTCACCCGTCGACAAGGAGCGAGCAGCCCATCAAGAGGATTAAGTTTGAGAGCAGTGGGAGAGTACTCAAGCAAATCAGCAACAACCGCAAGTGCTCGAGTCCCAGAACGTCAGACTCTGAGGATAATGACAAACGGAGGACTCACAATGTGCTGGAGAGGCAAAGGCGAAACGAGCTCAAGTTGAGCTTTTTCGCATTACGGGATGAGATCCCGGACGTGGCGAACAATGAGAAGGCAGCCAAAGTTGTCATACTCAAAAAGGCGACAGAGTGCATTTTCAGTATGCAAACGGACGAGCAGAAACTGTTATTGTTGAAAGAGCAGTTGAGGAAAAAGAGTGAACAGTTGAAAAGCAGACTAGAGCAGCTGAGGAACTCTCAGCAAGTTTAATTTATGAAAGGATGCCATCTTTTTATGCCTAAAGTAACTTGTAGAGTGGTGGTGCATGCAAATGCAAAAATGACTTATCACAGGTATCGGCCAGACACCTGGGCAGGAATCAGAATTATTTTCTTTCACTGCCTCACTTGAACTTTATAGGGGTTATCAATTTCTTATTTAAGTGTTTCATTTTTATTGATAAGAGGTTCTGCACAGTTGTCTACCTTAACTTAATGCTTTTGTATGTTTTGTACATAATTCTCAAATGTATTGATctcacaaatacatttttataaatcATGTA
>XM_021612593.2
CGCGGGAGCAGCTGTTGTTAATCTTGCAGTCAGTAGGGTGGTGATAGACACACGCAGCACTGGGCTCAAAGGACTTTACAACAACGGTGTTGACTTCGGCTCTTTTATTTCGCCTGCTTTCTCAACGAACAAGTATTTTGTTTGTGCTGTCACTGCTACGGCAGTCACAATGCCGCTGAATTCAAACATGGCCAGTAAAAACTATGACTACGACTATGACTCGGTCCAGCCCTACTTTTACTTCGACATTGAGGAGGATAATTTCTATCACCGGCAACACAGCCAACTCCAACCCCCTGCTCCAAGCGAGGATATATGGAAGAAATTCGAACTGCTGCCGACACCACCGCTTTCTCCCAGCCGGCGACCCTCTCTATCAAGCCTCTTCCCTTCGACTGCAGACCAGCTGGAGATGGTCACGGAATTTCTCGGGGATGACGTGGTGAACCATAGTTTCATTTGTGACGCGGACTACTCCCAGTCTTTTCTCAAATCTATCATTATCCGGGACTGTATGTGGAGCAGTTTTTCGGCTGCTGCTAAACTGGAGAAAGTAGTGTCCGAGAGACTAGCAACGCTGCAAGCGAGAAGGGACTCTAGCGTGGCCGGGGAAGCTAGCGCAGTAACCAGCACGAATCTAAACTTGAATTACCTGCAAGACCTGAATAACTCCGCATCGGAATGCATTGACCCTTCTGTGGTGTTCCCTTACCCGGTTGCCGAGAACCCTAAACACACAAAAACGACTACAGCGTGTGCCATGGCATTGCCTTTGGATACCCCACCGAACAGTGGTAGCAGCAGCGATAGCGATTCAGaggaggaagaagagattgACGTGGTGACAGTGGAAAAGAGAAAGTCTGTAAGGAGGTCAGACTTGCACATGTCTAGTAGCACACACCTCTGCCCCCTTGTCCTGAAAAGGTGTCACGTCAACATCCACCAACACAACTACGCCGCTCACCCGTCGACAAGGAGCGAGCAGCCCATCAAGAGGATTAAGTTTGAGAGCAGTGGGAGAGTACTCAAGCAAATCAGCAACAACCGCAAGTGCTCGAGTCCCAGAACGTCAGACTCTGAGGATAATGACAAACGGAGGACTCACAATGTGCTGGAGAGGCAAAGGCGAAACGAGCTCAAGTTGAGCTTTTTCGCATTACGGGATGAGATCCCGGACGTGGCGAACAATGAGAAGGCAGCCAAAGTTGTCATACTCAAAAAGGCGACAGAGTGCATTTTCAGTATGCAAACGGACGAGCAGAAACTGTTATTGTTGAAAGAGCAGTTGAGGAAAAAGAGTGAACAGTTGAAAAGCAGACTAGAGCAGCTGAGGAACTCTCAGCAAGTTTAATTTATGAAAGGATGCCATCTTTTTATGCCTAAAGTAACTTGTAGAGTGGTGGTGCATGCAAATGCAAAAATGACTTATCACAGGTATCGGCCAGACACCTGGGCAGGAATCAGAATTATTTTCTTTCACTGCCTCACTTGAACTTTATAGGGGTTATCAATTTCTTATTTAAGTGTTTCATTTTTATTGATAAGAGGTTCTGCACAGTTGTCTACCTTAACTTAATGCTTTTGTATGTTTTGTACATAATTCTCAAATGTATTGATctcacaaatacatttttataaatcATGTA

Function

symbol description
myc Enables several functions, including DNA-binding transcription factor activity, RNA polymerase II-specific; eukaryotic initiation factor eIF2 binding activity; and transcription cis-regulatory region binding activity. Involved in several processes, including positive regulation of macromolecule metabolic process; regulation of fibroblast proliferation; and regulation of nucleobase-containing compound metabolic process. Acts upstream of or within positive regulation of cell population proliferation and regulation of gene expression. Located in chromatin; nucleus; and rough endoplasmic reticulum. Part of protein-containing complex. Implicated in several diseases, including demyelinating disease; hematologic cancer (multiple); lung adenocarcinoma; prostate cancer (multiple); and urinary bladder cancer. Biomarker of several diseases, including hepatitis C; leukemia (multiple); liver disease (multiple); polycystic kidney disease 1; and urinary system cancer (multiple).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612591.2 False 1655 mRNA 0.47 3 43599754 43602305
XM_021612593.2 True 1649 mRNA 0.47 3 43599754 43602305
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Neighbor

gene id symbol gene type direction distance location
puf60a puf60 coding downstream 1073168 42431791 ~ 42526586 (-)
klhl18 klhl18 coding downstream 1179667 42340682 ~ 42420087 (-)
LOC118965611 NA coding downstream 1870767 41725469 ~ 41728987 (-)
LOC110529916 LOC106571797 coding downstream 2630276 40958142 ~ 40969478 (-)
LOC118965517 NA coding downstream 2799717 40779851 ~ 40800037 (-)
LOC118965613 NA coding upstream 157024 43759329 ~ 43763318 (-)
efr3a efr3a coding upstream 582688 44184993 ~ 44436559 (-)
LOC110529930 NA coding upstream 788573 44390878 ~ 44394639 (-)
LOC110529115 NA coding upstream 1378664 44980969 ~ 44984268 (-)
basp1 NA coding upstream 1519778 45122083 ~ 45173741 (-)
G710490 NA non-coding downstream 9870 43589655 ~ 43589884 (-)
G710488 NA non-coding downstream 11492 43587684 ~ 43588262 (-)
G709835 NA non-coding downstream 78957 43520425 ~ 43520797 (-)
G709667 NA non-coding downstream 218578 43380559 ~ 43381176 (-)
G709663 NA non-coding downstream 222090 43374947 ~ 43377664 (-)
G710781 NA non-coding upstream 441341 44043646 ~ 44043959 (-)
G710785 NA non-coding upstream 450725 44053030 ~ 44056352 (-)
G710800 NA non-coding upstream 465634 44067939 ~ 44068194 (-)
G710795 NA non-coding upstream 466558 44068863 ~ 44069201 (-)
G710793 NA non-coding upstream 468388 44070693 ~ 44071246 (-)
G709454 NA other downstream 428672 43170760 ~ 43171082 (-)
G709272 NA other downstream 879055 42719771 ~ 42720699 (-)
slc22a16 LOC106571810 other downstream 3640141 39956961 ~ 40017167 (-)
G706683 stxbp5 other downstream 4373441 39219644 ~ 39226313 (-)
G704874 NA other downstream 5285951 38313489 ~ 38313803 (-)
G711133 NA other upstream 936488 44538793 ~ 44539504 (-)
G712814 NA other upstream 1855472 45457777 ~ 45458248 (-)
crfb16 LOC106568648 other upstream 2708825 46309732 ~ 46325685 (-)
LOC110529973 LOC106568664 other upstream 3449162 47051073 ~ 47067973 (-)
G714425 LOC106568665 other upstream 3576119 47178424 ~ 47178736 (-)

Expression

mycb(myc) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 125.
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mycb(myc) Expression in each Bioproject

Bar chart with 21 bars.
mycb(myc) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network