XLOC_025790


Basic Information

Item Value
gene id XLOC_025790
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 55646873 ~ 55654264 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052808
GAGACCCAGCAGGACTATAGCCTACGGCCCCAACTCAAACCTGACCTTTGGAAGCTCTCGCTCAGAGTCAGGTATTTAGCACAGCTGGGTTCACATTCTTCCCTCGCTCACCCCCTCATTCATGCTTTCTTTCATGAGGTGCCTCGCCCCCCCTCTGTCCTTCTTTTCCGCCTGCTCAAAAAGTGTACTTATTCTCCATCCGTCGGGGTTTTTTTTTCCTAGATAAAAGTGCGAAGAGAGGCAGCTTAAATCAGAGGAGAACGGTGGTAAATAAGAATCGGAGAAGATGAAGGCCACGGTCTCTGTGACTCACAGAGGAACCGCTGCTGCGTGTTGTTTTGTGAATAACTCGATTCAGAAACACAGAAAGGGAGAGAAATAAGTTCCACATGCTTCAGAGGAACAAAAAAGTGCCCcgagagagaggaaaaacagaCTGCTCAAGGAACATTCTTCAAAAGGAAATCAGGGAATAACATCAAAAAAAGAGAGACTTTGCTTACTTTCGTCTGGTTCTTAATCATCTCCTACATAAACAACCCGACAAAGATAAGCAGGGATGAAACATTCTGTCACCTTCTTCAAGATCACCCTCCCAATGGGCTGTCTTTGAGACAGATAAACATTTGTCTGGCACCACTCTTTGATGGGTCACCTCATTTACAACATCGAGAGTTGTGACAGGTACTAATTCGTCAAGCCAAATTCGCCCTGATGTTTTGTTAAACCCAGACAATAAACCTTTTTAAATAACCAAACCGCTCATCAAGACATCTAAAGGTGTCATACAAGCATCACTTACTGCAGTAAGAAAGTGGGACTACACACTCTGTTTAAATCagaataagctaaattatttgAAATGCTTTGTGCTGTTCACGGCAAAGCAACaacaaaagtttcatttttggatCAGTGACTTTTTTGATGTGTGTCACTTGTTTTATCCGTTTGATGACTGAAACCAATTCTGCATTGTGAACTAGCCTTGATCCTTGAAGATGATCCTCTAACTGAAGAAGAATTTCAAAGCGGAGGAAACTGTGTGGAGCCAGCAGAGGGCCTGGTGCTAGACAATATTTACATGAAAGGAAGAGCTGCTCTATTGATGTTTTTTTCTCCCTTCGCTCTCTGCGTAATGCAAGCCAGgagggGGAGGAGGAAGGCAGACACAAGGAGGCAAAGGAAAATAAAACAGATCATCATTTGCATGGTATACACAGAGCAGTGACCATGCCTTGGGAGGAAACGATGGCGTAGGCAAATAAACAAGACTGGGACAATACCGGTACAGCGCAATCAGAAGATAACGTTTTGTCAACATTTATCCATGTCTTTCCAAAAGTGAGATAGTATGCACATTTCCAAGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0031224 intrinsic component of membrane cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0060089 molecular transducer activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052808 True 1370 lncRNA 0.43 2 55646873 55654264

Neighbor

gene id symbol gene type direction distance location
XLOC_025789 NA coding upstream 158632 55482120 ~ 55488241 (+)
XLOC_025788 NA coding upstream 259216 55386215 ~ 55387657 (+)
XLOC_025787 CT583658.1 coding upstream 347715 55299043 ~ 55299158 (+)
XLOC_025786 si:dkey-114l24.2 coding upstream 356236 55288200 ~ 55290637 (+)
XLOC_025785 hbbe1.3 coding upstream 514821 55131289 ~ 55132052 (+)
XLOC_025791 FP326652.1 coding downstream 444992 56099256 ~ 56107909 (+)
XLOC_025792 prkcab coding downstream 509012 56163276 ~ 56342119 (+)
XLOC_025793 NA coding downstream 704418 56358682 ~ 56360650 (+)
XLOC_025794 cacng5b coding downstream 712131 56366395 ~ 56394018 (+)
XLOC_025795 rac1b coding downstream 920359 56574623 ~ 56594285 (+)
XLOC_025429 BX649540.1 misc upstream 25397837 30248739 ~ 30249036 (+)
XLOC_025776 NA non-coding upstream 810356 54834509 ~ 54836517 (+)
XLOC_025769 NA non-coding upstream 1310234 54332726 ~ 54336639 (+)
XLOC_025796 CU019632.1 non-coding downstream 964931 56619195 ~ 56622872 (+)
XLOC_025799 NA non-coding downstream 1167435 56821699 ~ 56822203 (+)
XLOC_025802 NA non-coding downstream 1295691 56949955 ~ 56957558 (+)

Expression


Co-expression Network