LOC110529930


Basic Information

Item Value
gene id LOC110529930
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 44390878 ~ 44394639 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474453.2
tgtagaaaaaagtaaaaataaagaaaaacccttgaatgagtaggtatccaAACTTTGGACTAGTATTGTATATGGAAAAACTCAAGCCCCTTAACCAAACCAACACACTAACACTCAATTATCATTAACAAACATATCATCCACAGCATGAAAAAATGTACTTTACTTGAAGCCTGCAGGTATAATGCATCATGATGAAGTaagttttaatacattgtaagacTTCTCATGAGCATGTTATAGCTGTCATTGATatgttgtatactgtatgtatcagtcATAACATCTCTTGTCTTTACTATTCATAACATCTGTCAAATCATTATTATAATGTTGCCATGAACGTCTTGCGAAGGAGGGTTACCTTATGTTCCTACCAACTGTTCCCTGACCTGGTTGTTATTGAAAGAGCCATTCTAAAGAAAAACAAGAATTGCTTCTTGGAATGCCTTCTGGATAAACAAAGGTTATTTTAATCCCCCAGTCCTTCGCAGTTTCACTCAAAGCTGGCACTGTGAGGCTTAAGGcttcccacatggcaccctattccttgtgTCCCTACCataggtccctggtcaaaagtagtgcacttcatagggattagggtgccatttgggacgtaacctaTGGGCTGAGTCGTCAATTAAGCTAACTAACTAACACACATTCACAGGCTCCCTTCTTTCCTCTGTGCTTTAATGTGGCAGGTAATTGCCAGCTACATAATGACCATCTTACAGGCTGGGCCTGGAAAGGTTGCCTGCTGACTGGCTTTTGATACACTGCATTAATGAAGTTTATGACTCTTGAGCCCTGGGGATCTGTCAAGCTCCCTTGTGCCAGGAAGATAACTTTGCTTGAAGCTCCCTTGTGCCAGGAAGATAACTTTGCTTAGGTGTTAAAGTGACCTCGCTTTACCTGTATGATGAGAATGTATTGTATACCAGAAAGCGCCTCTGCGTTAGAAGTGTCAGGGAAGGGGCAGCTGGGAAATGCTTTTGCAGAAGTTTGTTTGAGCTTTGAAGAGCGGTTTTGTCAAAGACCTGTTAGCAGTAATGATtgattttttttccttctccGCTGCGTTTTCTGTCTCTTTACTTTACTGGTGCGTAGTCTGTCTCATCCGCCATCTTTTTAGAGTACCCACTTTAGTACTCAGATAATTAAAACGTTTGTCATTACAGAGCGACTGCCCCTATAAATCAACTAATCCCTTTTGAAAATGGCCTATGTAGCATCAATATGAGTccgaaacatttattctagttttagaattgactacaaagtgtaattaGGATAATTAGAGTAATTAAGTCAGTCTTGTCTAAAACTGAGTTTGGAACCTTAGTGTGTCACATCGAGTTAATTAAGGTTGGGTTTGGATTACAATGTTAACAAATCATGCCCCCTTTTGCCAAACTCCACATGCAAATCGCCCCTCAGCCCGCTTCGTTCTGTTCATTAAGTGGGGCTCCGTTGTTTCATCGCCCCCAATACTTTCAAAGGATCGCTGCCATTTTAAACTGAATAGCCCTGTACGGATTGACCATGCAATGCATGCATCCAGCAGGATGCACAGCCAACTGGTTTGCATGCCCTGCCGATGGAACCTATCATGTGGAAGTTGGTTGGAGTtcgttggtccccagtggtggtgagtatacAGGTAGCTAGATCACGAATTGCTGGTTGTGCGTCTGTAGACTTTGATAATCATTGTCAGCTATGCAAGTGATGATAGTGACGagtgacgttagctagctagctaccctaACGGTCTAGATAGTTACCTAGCTGACTAACGTTAGCCTAACTCGGTACAATGCCGATTTTGCTTGGAAACACAAAAAATTACAAAACAAGAAAATTATTAGTTGGAAAACCTTTTTGTATGATTGTGATgtcgccagattgactttagatgcagtataactttagccagctaactaagTTTGAGGGGACCACCGTATATGACCTATtttagcattgctagctattttcTTTTACAAAAATTGCTAGTAACAGTAAAGGCAACATTGCCATCTCTATAATGAATTTGACTACATCATAATATGGCAGATTCCTATTAATTATATGTTATCCTATTTCCATGCcactaagggctctattcaatccgtatcttggaagttcagctttacagcgtGATTTAAATAAGAAAGCAAAGTTTCCGCTCTAGCTGAGACTGCGTTCACGGTAAACGCTTCTCAATTCAGAAATTACCTTTTACATTTCTATCGTGGAAAATGTAATGCTTCATctttacagattgaatagagccctacaTTTTTGTGTATTAATATGAAACAGTCACATTAGCCTCTGAGGTGCAACCCCATTTCCAGGGAACAAATATATATTGGATGCAGCTATGGTGGTACTAGCTAACTCGTGTCTGACTACAACAATGTACTAACTAGCAGCAACAAACTCCAGCCATCCCAGGGCCATAGCAAAACTTGTCATAGCTGGTTTCATAGTATAATGGCGTCCCCGGCCTGAATCTAATTCAATCTCGAGCCAGTCAGCCTACATTTGTTAAGCATAGATTTAGCATCCAAACAAGGTTACGTTTTTTCTCAAACTATGTCTATAATTGAGGGTTGATGACAGTCGTTGACCCTGTTTTTCTGTTAGACAAAGTGCATAGTTGGGTGCCAGACTGATCCCCTGGTCATGAACGGATGCCGGGACCTACCAGCTTGTCAGGCAATACCTCCGACTAAGTGTCATGCGACACAATTACCCTTGCGACACCACCTCCGTTGTTGCCAGACTCTCCCTCGACTCCTATGAAAAGGACACGCCATCATGAGGCCTTTGATAGTGACCCGAGTTACTGCCATGATGACAAACGGCTTCGACAGGTCCTcacagtcaacaccacctcataaGATTGCCTGCTGCAGTTGTTCGAGAGATGTCCAGTTTACAGCAAAACATGCACCATAGAGAAGACCAGAAAGGGGAACCTCTTCAGCATCATCCAAACATCCAAACATGCCCTCACTGCATTCTATTTCACTTCACATTTTATCATATCTGAAGTGAAATAGGAAGGTGAGTGCAACGACCAGGatggttccaccaggctaatcataaccaccattgataatgtAATCAGTGGTGTGTGTCTGACCGACCAGTATCTTCGATGAGCCAGGAGCAGATCTACGCTACTTTGCCCATCAATTCGGCCTCTGTCAAAGACCTCACCTCCAGCCTCACCTCTTGCCTGtactaaaaaatgtctgcagcattgaaggtctccaagaatacagtggcctccttccattttaagaatgatgaagtttggaaccaccaagactcttcctagagcagtTGGCAGACAAGGTCCTTGGTCAGAgtggtgatcaagaacccgatggtcactctgacagagctctggagttcttccttccagatggacaacgatccaacaatcaggcctttatggtagagtggccagacggaag

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474453.2 True 3497 mRNA 0.42 3 44390878 44394639
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118965613 NA coding downstream 627560 43759329 ~ 43763318 (-)
mycb myc coding downstream 788573 43599754 ~ 43602305 (-)
puf60a puf60 coding downstream 1864292 42431791 ~ 42526586 (-)
klhl18 klhl18 coding downstream 1970791 42340682 ~ 42420087 (-)
LOC118965611 NA coding downstream 2661891 41725469 ~ 41728987 (-)
LOC110529115 NA coding upstream 586330 44980969 ~ 44984268 (-)
basp1 NA coding upstream 727444 45122083 ~ 45173741 (-)
znf622 znf622 coding upstream 1090379 45485018 ~ 45495101 (-)
retreg1 fam134b coding upstream 1114442 45509081 ~ 45601564 (-)
nol7 nol7 coding upstream 1284220 45678859 ~ 45684992 (-)
G710822 NA non-coding downstream 294920 44094015 ~ 44095958 (-)
G710820 NA non-coding downstream 302189 44088363 ~ 44088689 (-)
G710819 NA non-coding downstream 303017 44087661 ~ 44087861 (-)
G710817 NA non-coding downstream 304468 44086173 ~ 44086410 (-)
G710809 NA non-coding downstream 315642 44074758 ~ 44075236 (-)
G711007 LOC106584485 non-coding upstream 43266 44437905 ~ 44438369 (-)
G711107 NA non-coding upstream 127355 44521994 ~ 44522225 (-)
G711121 NA non-coding upstream 137326 44531965 ~ 44532192 (-)
G711131 NA non-coding upstream 143186 44537825 ~ 44538121 (-)
G712181 NA non-coding upstream 155630 44550269 ~ 44629270 (-)
G709454 NA other downstream 1219796 43170760 ~ 43171082 (-)
G709272 NA other downstream 1670179 42719771 ~ 42720699 (-)
slc22a16 LOC106571810 other downstream 4431265 39956961 ~ 40017167 (-)
G706683 stxbp5 other downstream 5164565 39219644 ~ 39226313 (-)
G704874 NA other downstream 6077075 38313489 ~ 38313803 (-)
G711133 NA other upstream 144154 44538793 ~ 44539504 (-)
G712814 NA other upstream 1063138 45457777 ~ 45458248 (-)
crfb16 LOC106568648 other upstream 1916491 46309732 ~ 46325685 (-)
LOC110529973 LOC106568664 other upstream 2656828 47051073 ~ 47067973 (-)
G714425 LOC106568665 other upstream 2783785 47178424 ~ 47178736 (-)

Expression

LOC110529930 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 0.4.
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LOC110529930 Expression in each Bioproject

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LOC110529930 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 10.
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Co-expression Network