basp1


Basic Information

Item Value
gene id basp1
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 45122083 ~ 45173741 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612606.2
GATCGCCAGAATGGAGTGAaccgtgtgcgtgcgtgtgcgtgtacgcGTGCGTGGCGCCAGAGAAATCCAGAGTGAGCCACGCAGAACACTACCATAATAGGCACAAGCTACCACGCGCACAGGCGAAGCCGCTTGATAAACTACACTTACTGAAAGGAGGGCTTTGTAACTTCACTGTCAACGAGACTAAAATGGGAGGCAAGCTCAGCAAAAAGAAGAAGGGATACAATGTAAACGATGAGAAGGCCAAGGACAAGGATGCCAAACCAGAGGGCGCAACAGCCGAGGAGAGCGAACCTCAGAACGACAAAAAGGACGAGGCCCCTGCTCCCGCCGAGACCACCGAGATAGCTAACGACACAAAGGATGTGCCCGCAGCCGATACCACGACGACCAAGGAGGAAGGAAAGGGCGCCTCCCCTCCCGCCAAGGAGCCGGAAAAACCTGCAGCAGAGCCCAAAGCGGAGGTGTCTAAGGCTGCGGAAGTCACCGACCCTGCCCCCATAGCCAAGGAGAAACCAGCCGCCCCTGCGAAAGAGCCAGCCCCCTCCACTAAGGAAGCCGCCCAAGCTCCAGAAGTCAAGGCCCAGGCGCCTGCACCACCCGCAGCCCAGGCTGAAAGCAAAGACGAGGCCGACGCTAAAAAGACTGAGGCCCCCGCAGTACCAGCGGCTAAAGCCGAGGCGGCCCCTGTTGCCGCTGCCCCCCAGGCCAAGCCCACAGAAGCAGCAGCGGCGGTCCCGGCCAAGGAGGCCCCGGCTGCTCGTTCAACAGCAGCACCACTGGCTGCCACTGAGCCCGCTGCACTGGTCAAGGCCAATGCCACAGAGGCCCCAGTTCCAAGCAAGGATCAAACCGTGGAAGTTCAAGATTAATGGACACCTCTTTTAAGAAAATACACTACattaaacaacaaaaatgaagTAAAATAgagaaaaaatgtaataaaatagcCCACCCATATtaatattaaaataataataataataatgatttgtTGGAGGAGGATTGTGACAACAACCTTGAGAAGgatgatgctgctgctgccgATGATTATTATTGTTATGGTTATTCTATTTTTTTTCTGCTGTAGTATTTGAACTTTAATAAAAGTCTGTCAGCCATATGCCCCTCCATTCCACAGCATCCTTCCTCCATCCATTTCTGGGATTCAGCATTCTCCgccttcatctctctgtcttctcagaGACCTCTGTAGTCTGGGACCATACACGTACATTTCCCCTAGACAGTGTGCTGCCGATGTCTGAAAATGAGGGGGGGAAAAGGGGGTTGAATCTATTTACCAGCTGGACATGCACTCTGTCTGTCCCATCCTCGACTTCCCCAAACTCAAACCATCCCCCATTCCCCAAACTCGCTCCTCTCCAGAGTGCCGTGTTCTCTGCTACCGTACCTGGCACGTCTGTTTTTAGCGCCAAGTGAGTTCCCTTTGCTGTTCCCATAGTCGGCaacttattttgtatttttgggtTGTTCGTGCTGTATATGGTCACTCAGTTTCTTGCCGCCTGTTTCCCAACAGGTTCATGCCACCTCGTGCAGACACTGTCAGAGTTGAGAGGAGGTACTTTGGAAATTCTGAGACTTTCCTAGAGGTACAATATGTCGATGCATTCTTAGGGATATGAAAATGccctaaagttttttttttttgtgtgtttatttttttttacaacattcTTATACCTTAGTTTTTCTAAGAAAAACATTAGTTGTAGATGATCAGGCCAGTTTGAAGCATTTCTTAAATGTTTCTAGAAATCCTGAAAAGCTTTGTAGATTGTTCTCGACGTTCCAGCTCTTAATTCCCAGACATTGGCAATTCTCAGTTCCTTTGGGTCACTCTGACTGCAGCatagactccccccccccccccccactgtgtctTATTTCAATTGAAAATAAGACATCTACTGTGTTTCAATCAATGTAACTCAATGGCTCTCAGCCTATATCACAAAGGTGCAATACATTTACACCCTAAAAAGGGATTGTGCCCAGCTGACAACAGTAGTAGTGTTGTCTGGGGATGAGGGTTCTAAATTAATGATACTACATGAGGCATCTACAGCCTACTCAAGCTGCCATGGTCCCTGTAACCATGGCTACCATGTGACATGTTCGAGTAGTAAGATGGAAGAAACCTGCACAAGGAAGGGAGCCTCTAATCTTGTCATCTCCACCACCATGCATTTTTACTCTTTCTGCTCATATGTTACATATATGAAAATATATGTaggtgtacagtaccagtcaaaggtttgaacacacctactcattaaagttttttaaattttttttttactattttcta

Function

NR:

description
brain acid soluble protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612606.2 True 2338 mRNA 0.48 2 45122083 45173741
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110529115 NA coding downstream 137815 44980969 ~ 44984268 (-)
efr3a efr3a coding downstream 685524 44184993 ~ 44436559 (-)
LOC110529930 NA coding downstream 727444 44390878 ~ 44394639 (-)
LOC118965613 NA coding downstream 1358765 43759329 ~ 43763318 (-)
mycb myc coding downstream 1519778 43599754 ~ 43602305 (-)
znf622 znf622 coding upstream 311277 45485018 ~ 45495101 (-)
retreg1 fam134b coding upstream 335340 45509081 ~ 45601564 (-)
nol7 nol7 coding upstream 505118 45678859 ~ 45684992 (-)
amph amph coding upstream 619507 45793248 ~ 45924730 (-)
tmem71 tmem71 coding upstream 832670 46006411 ~ 46033000 (-)
G712421 NA non-coding downstream 142675 44978973 ~ 44979408 (-)
G712213 NA non-coding downstream 528088 44589551 ~ 44593995 (-)
G712212 NA non-coding downstream 528689 44588373 ~ 44593394 (-)
G712208 NA non-coding downstream 529788 44583735 ~ 44592295 (-)
G712622 NA non-coding upstream 50478 45224219 ~ 45224544 (-)
G712787 NA non-coding upstream 247430 45421171 ~ 45421678 (-)
G712788 NA non-coding upstream 248208 45421949 ~ 45422344 (-)
G712789 NA non-coding upstream 250639 45424380 ~ 45424611 (-)
G712794 myo10 non-coding upstream 257032 45430773 ~ 45430996 (-)
G711133 NA other downstream 582579 44538793 ~ 44539504 (-)
G709454 NA other downstream 1951001 43170760 ~ 43171082 (-)
G709272 NA other downstream 2401384 42719771 ~ 42720699 (-)
slc22a16 LOC106571810 other downstream 5162470 39956961 ~ 40017167 (-)
G706683 stxbp5 other downstream 5895770 39219644 ~ 39226313 (-)
G712814 NA other upstream 284036 45457777 ~ 45458248 (-)
crfb16 LOC106568648 other upstream 1137389 46309732 ~ 46325685 (-)
LOC110529973 LOC106568664 other upstream 1877726 47051073 ~ 47067973 (-)
G714425 LOC106568665 other upstream 2004683 47178424 ~ 47178736 (-)
G715865 NA other upstream 3115201 48288942 ~ 48289581 (-)

Expression

basp1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
End of interactive chart.

basp1 Expression in each Bioproject

Bar chart with 15 bars.
basp1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
End of interactive chart.

Co-expression Network